Wall clock time and date at job start Tue Mar 31 2020 06:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50706 * 109.47148 * 2 1 4 4 C 1.33818 * 124.51796 * 90.00338 * 3 2 1 5 5 C 1.37478 * 115.09621 * 179.97438 * 4 3 2 6 6 C 1.36650 * 113.29732 * 359.97438 * 5 4 3 7 7 C 1.46582 * 125.45595 * 179.97438 * 6 5 4 8 8 O 1.21696 * 120.00279 * 352.13615 * 7 6 5 9 9 N 1.34774 * 119.99584 * 172.13855 * 7 6 5 10 10 C 1.46505 * 120.00432 * 1.89809 * 9 7 6 11 11 C 1.50701 * 109.47007 * 82.16756 * 10 9 7 12 12 H 1.08001 * 119.99983 * 0.02562 * 11 10 9 13 13 C 1.37882 * 119.99891 * 180.02562 * 11 10 9 14 14 N 1.31510 * 119.99928 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99717 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47084 * 89.99887 * 15 13 11 17 17 H 1.48497 * 109.46879 * 209.99643 * 15 13 11 18 18 H 1.48497 * 109.47193 * 329.99681 * 15 13 11 19 19 C 1.46502 * 119.99917 * 181.89727 * 9 7 6 20 20 C 1.53002 * 109.47226 * 84.40209 * 19 9 7 21 21 C 1.52996 * 109.46991 * 65.00055 * 20 19 9 22 22 C 1.52995 * 109.47220 * 185.00206 * 20 19 9 23 23 S 1.70612 * 124.52043 * 269.69937 * 3 2 1 24 24 H 1.08996 * 109.47292 * 59.99749 * 1 2 3 25 25 H 1.08991 * 109.47158 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47122 * 299.99760 * 1 2 3 27 27 H 1.09003 * 109.47156 * 119.99867 * 2 1 3 28 28 H 1.08994 * 109.46784 * 239.99976 * 2 1 3 29 29 H 1.07997 * 122.45151 * 359.93607 * 4 3 2 30 30 H 1.08000 * 123.34927 * 179.97438 * 5 4 3 31 31 H 1.08998 * 109.47147 * 202.16374 * 10 9 7 32 32 H 1.08999 * 109.46763 * 322.17201 * 10 9 7 33 33 H 0.97000 * 120.00225 * 180.02562 * 14 13 11 34 34 H 1.09002 * 109.47133 * 204.40395 * 19 9 7 35 35 H 1.08997 * 109.47029 * 324.40447 * 19 9 7 36 36 H 1.08998 * 109.46939 * 305.00422 * 20 19 9 37 37 H 1.09005 * 109.47568 * 300.00221 * 21 20 19 38 38 H 1.09007 * 109.47227 * 60.00395 * 21 20 19 39 39 H 1.09000 * 109.47439 * 180.02562 * 21 20 19 40 40 H 1.08999 * 109.46988 * 59.99937 * 22 20 19 41 41 H 1.08998 * 109.47479 * 180.02562 * 22 20 19 42 42 H 1.08998 * 109.47341 * 299.99970 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2852 2.1358 1.1026 5 6 2.7378 3.4143 0.8775 6 6 2.8479 3.7229 -0.4491 7 6 3.3025 5.0080 -0.9882 8 8 3.4825 5.9518 -0.2413 9 7 3.5210 5.1442 -2.3111 10 6 3.2645 4.0206 -3.2156 11 6 1.7956 3.9690 -3.5486 12 1 1.1208 4.7004 -3.1289 13 6 1.3133 2.9882 -4.3892 14 7 2.1352 2.0980 -4.9006 15 14 -0.5072 2.9248 -4.8025 16 1 -0.7687 3.7434 -6.0136 17 1 -0.9076 1.5182 -5.0599 18 1 -1.2926 3.4624 -3.6626 19 6 4.0151 6.4160 -2.8448 20 6 5.5396 6.4620 -2.7239 21 6 6.1548 5.3823 -3.6164 22 6 6.0449 7.8371 -3.1649 23 16 2.3616 2.3300 -1.4057 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8901 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 2.1435 1.7378 2.0965 30 1 2.9820 4.1058 1.6703 31 1 3.8403 4.1528 -4.1316 32 1 3.5602 3.0898 -2.7316 33 1 1.7960 1.4082 -5.4922 34 1 3.7309 6.5049 -3.8933 35 1 3.5808 7.2404 -2.2794 36 1 5.8274 6.2842 -1.6877 37 1 5.7948 4.4025 -3.3022 38 1 5.8670 5.5600 -4.6526 39 1 7.2409 5.4147 -3.5299 40 1 5.6066 8.6063 -2.5290 41 1 7.1311 7.8698 -3.0792 42 1 5.7572 8.0148 -4.2010 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049932752.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:02 Heat of formation + Delta-G solvation = -27.119565 kcal Electronic energy + Delta-G solvation = -22480.385482 eV Core-core repulsion = 19358.350348 eV Total energy + Delta-G solvation = -3122.035134 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.22126 -37.26973 -35.88712 -34.25660 -33.13958 -32.44652 -28.55887 -27.66600 -26.81508 -25.84546 -24.11890 -23.05846 -21.72203 -20.59586 -19.41088 -17.65094 -17.12086 -16.67171 -15.68109 -15.09651 -14.67904 -14.62100 -14.48776 -13.97772 -13.64672 -13.47047 -13.02514 -12.71018 -12.58626 -12.39162 -12.34177 -12.07447 -11.93418 -11.52391 -11.45183 -11.33315 -11.14241 -11.06644 -10.92565 -10.75527 -10.66148 -10.60428 -10.32145 -10.20264 -9.89025 -9.19456 -9.06920 -8.77532 -7.99810 -7.69944 -7.46958 -6.37633 -4.39711 1.40045 2.58120 3.02345 3.13357 3.15498 3.21529 3.26563 3.90535 4.05324 4.22035 4.96460 5.20641 5.22239 5.29302 5.38706 5.43887 5.54778 5.61765 5.85379 5.87850 5.96607 6.01107 6.07160 6.07911 6.14484 6.15588 6.23312 6.32436 6.34238 6.40875 6.45767 6.49973 6.67313 6.69802 6.76047 6.92660 6.98455 7.19333 7.43208 7.59197 7.77499 8.22755 8.61416 8.99445 9.20732 10.66271 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.012642 B = 0.007369 C = 0.005283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.367986 B = 3798.809624 C = 5298.877136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.047 4.047 3 C -0.296 4.296 4 C -0.170 4.170 5 C -0.082 4.082 6 C -0.295 4.295 7 C 0.590 3.410 8 O -0.568 6.568 9 N -0.595 5.595 10 C 0.227 3.773 11 C -0.537 4.537 12 H 0.068 0.932 13 C 0.077 3.923 14 N -0.876 5.876 15 Si 0.888 3.112 16 H -0.276 1.276 17 H -0.281 1.281 18 H -0.268 1.268 19 C 0.129 3.871 20 C -0.113 4.113 21 C -0.145 4.145 22 C -0.141 4.141 23 S 0.401 5.599 24 H 0.058 0.942 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.117 0.883 30 H 0.133 0.867 31 H 0.056 0.944 32 H 0.041 0.959 33 H 0.270 0.730 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.054 0.946 39 H 0.046 0.954 40 H 0.053 0.947 41 H 0.051 0.949 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.603 -0.785 3.360 4.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.085 4.085 3 C -0.416 4.416 4 C -0.201 4.201 5 C -0.116 4.116 6 C -0.416 4.416 7 C 0.380 3.620 8 O -0.451 6.451 9 N -0.325 5.325 10 C 0.104 3.896 11 C -0.579 4.579 12 H 0.087 0.913 13 C -0.129 4.129 14 N -0.513 5.513 15 Si 0.715 3.285 16 H -0.202 1.202 17 H -0.206 1.206 18 H -0.193 1.193 19 C 0.006 3.994 20 C -0.132 4.132 21 C -0.202 4.202 22 C -0.199 4.199 23 S 0.678 5.322 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.135 0.865 30 H 0.151 0.849 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.605 -0.846 2.070 3.433 hybrid contribution -0.989 0.095 1.337 1.666 sum 1.616 -0.752 3.407 3.845 Atomic orbital electron populations 1.21785 0.95085 1.01167 1.02435 1.19936 0.95644 0.90873 1.02091 1.25758 1.08187 1.02693 1.04925 1.19548 1.07580 0.94549 0.98388 1.20347 1.00271 0.96172 0.94837 1.24684 1.17347 1.01111 0.98484 1.17031 0.76760 0.86249 0.81998 1.90686 1.55253 1.40489 1.58649 1.48010 1.63421 1.14537 1.06487 1.19721 0.97408 0.82859 0.89617 1.21537 0.92985 1.14260 1.29110 0.91345 1.24886 0.98328 0.94921 0.94808 1.69900 1.34972 1.15628 1.30761 0.86604 0.84763 0.77804 0.79370 1.20164 1.20603 1.19260 1.21363 0.92424 0.86236 0.99398 1.21505 0.96105 0.95279 1.00361 1.21864 0.99462 0.99382 0.99521 1.21741 1.00476 0.96519 1.01129 1.85970 1.51675 0.97208 0.97329 0.92294 0.92739 0.92679 0.91451 0.91303 0.86509 0.84933 0.92620 0.94251 0.92012 0.90303 0.91079 0.91121 0.92039 0.92667 0.93523 0.92774 0.92959 0.92721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.90 37.16 0.37 -1.68 16 2 C -0.05 -0.70 6.37 -27.88 -0.18 -0.88 16 3 C -0.30 -5.36 5.53 -35.86 -0.20 -5.55 16 4 C -0.17 -3.03 10.00 -41.41 -0.41 -3.45 16 5 C -0.08 -1.60 10.02 -40.43 -0.41 -2.01 16 6 C -0.29 -6.35 6.23 -36.79 -0.23 -6.58 16 7 C 0.59 13.38 7.52 -12.90 -0.10 13.28 16 8 O -0.57 -13.74 16.51 5.19 0.09 -13.65 16 9 N -0.60 -12.61 2.22 -176.64 -0.39 -13.00 16 10 C 0.23 5.07 3.61 -5.19 -0.02 5.05 16 11 C -0.54 -12.93 6.94 -34.44 -0.24 -13.17 16 12 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 13 C 0.08 1.84 5.01 -17.82 -0.09 1.75 16 14 N -0.88 -21.53 13.29 55.43 0.74 -20.80 16 15 Si 0.89 19.27 29.54 -169.99 -5.02 14.25 16 16 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 17 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 18 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 19 C 0.13 2.36 4.77 -4.04 -0.02 2.34 16 20 C -0.11 -1.80 3.09 -90.62 -0.28 -2.08 16 21 C -0.15 -2.23 8.38 37.16 0.31 -1.92 16 22 C -0.14 -1.82 9.19 37.16 0.34 -1.48 16 23 S 0.40 8.29 15.79 -107.50 -1.70 6.59 16 24 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 30 H 0.13 2.47 8.06 -52.49 -0.42 2.05 16 31 H 0.06 1.27 6.96 -51.93 -0.36 0.91 16 32 H 0.04 0.93 4.50 -22.35 -0.10 0.83 16 33 H 0.27 6.36 8.31 -40.82 -0.34 6.02 16 34 H 0.08 1.38 8.02 -51.93 -0.42 0.97 16 35 H 0.07 1.33 7.57 -51.93 -0.39 0.94 16 36 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.06 1.06 6.46 -51.93 -0.34 0.73 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 350.53 15.07 5.28 5.28 Total: -1.00 -26.26 350.53 -8.80 -35.06 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -6.65 Total: 2.64 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: -1.15 Total: -16.37 kcal Atomic # 7 Polarization: -34.14 SS G_CDS: 0.35 Total: -33.79 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: 0.09 Total: -13.65 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.02 Total: 14.25 kcal Atomic # 16 Polarization: 8.29 SS G_CDS: -1.70 Total: 6.59 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -26.26 -8.80 -35.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049932752.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.943 kcal (2) G-P(sol) polarization free energy of solvation -26.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds