Wall clock time and date at job start Tue Mar 31 2020 06:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50706 * 109.47148 * 2 1 4 4 C 1.33818 * 124.51796 * 90.00338 * 3 2 1 5 5 C 1.37478 * 115.09621 * 179.97438 * 4 3 2 6 6 C 1.36650 * 113.29732 * 359.97438 * 5 4 3 7 7 C 1.46582 * 125.45595 * 179.97438 * 6 5 4 8 8 O 1.21696 * 120.00279 * 352.13615 * 7 6 5 9 9 N 1.34774 * 119.99584 * 172.13855 * 7 6 5 10 10 C 1.46505 * 120.00432 * 1.89809 * 9 7 6 11 11 C 1.50701 * 109.47007 * 82.16756 * 10 9 7 12 12 H 1.08001 * 119.99983 * 0.02562 * 11 10 9 13 13 C 1.37882 * 119.99891 * 180.02562 * 11 10 9 14 14 N 1.31510 * 119.99928 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99717 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47084 * 89.99887 * 15 13 11 17 17 H 1.48497 * 109.46879 * 209.99643 * 15 13 11 18 18 H 1.48497 * 109.47193 * 329.99681 * 15 13 11 19 19 C 1.46502 * 119.99917 * 181.89727 * 9 7 6 20 20 C 1.53002 * 109.47226 * 84.40209 * 19 9 7 21 21 C 1.52996 * 109.46991 * 65.00055 * 20 19 9 22 22 C 1.52995 * 109.47220 * 185.00206 * 20 19 9 23 23 S 1.70612 * 124.52043 * 269.69937 * 3 2 1 24 24 H 1.08996 * 109.47292 * 59.99749 * 1 2 3 25 25 H 1.08991 * 109.47158 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47122 * 299.99760 * 1 2 3 27 27 H 1.09003 * 109.47156 * 119.99867 * 2 1 3 28 28 H 1.08994 * 109.46784 * 239.99976 * 2 1 3 29 29 H 1.07997 * 122.45151 * 359.93607 * 4 3 2 30 30 H 1.08000 * 123.34927 * 179.97438 * 5 4 3 31 31 H 1.08998 * 109.47147 * 202.16374 * 10 9 7 32 32 H 1.08999 * 109.46763 * 322.17201 * 10 9 7 33 33 H 0.97000 * 120.00225 * 180.02562 * 14 13 11 34 34 H 1.09002 * 109.47133 * 204.40395 * 19 9 7 35 35 H 1.08997 * 109.47029 * 324.40447 * 19 9 7 36 36 H 1.08998 * 109.46939 * 305.00422 * 20 19 9 37 37 H 1.09005 * 109.47568 * 300.00221 * 21 20 19 38 38 H 1.09007 * 109.47227 * 60.00395 * 21 20 19 39 39 H 1.09000 * 109.47439 * 180.02562 * 21 20 19 40 40 H 1.08999 * 109.46988 * 59.99937 * 22 20 19 41 41 H 1.08998 * 109.47479 * 180.02562 * 22 20 19 42 42 H 1.08998 * 109.47341 * 299.99970 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2852 2.1358 1.1026 5 6 2.7378 3.4143 0.8775 6 6 2.8479 3.7229 -0.4491 7 6 3.3025 5.0080 -0.9882 8 8 3.4825 5.9518 -0.2413 9 7 3.5210 5.1442 -2.3111 10 6 3.2645 4.0206 -3.2156 11 6 1.7956 3.9690 -3.5486 12 1 1.1208 4.7004 -3.1289 13 6 1.3133 2.9882 -4.3892 14 7 2.1352 2.0980 -4.9006 15 14 -0.5072 2.9248 -4.8025 16 1 -0.7687 3.7434 -6.0136 17 1 -0.9076 1.5182 -5.0599 18 1 -1.2926 3.4624 -3.6626 19 6 4.0151 6.4160 -2.8448 20 6 5.5396 6.4620 -2.7239 21 6 6.1548 5.3823 -3.6164 22 6 6.0449 7.8371 -3.1649 23 16 2.3616 2.3300 -1.4057 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8901 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 2.1435 1.7378 2.0965 30 1 2.9820 4.1058 1.6703 31 1 3.8403 4.1528 -4.1316 32 1 3.5602 3.0898 -2.7316 33 1 1.7960 1.4082 -5.4922 34 1 3.7309 6.5049 -3.8933 35 1 3.5808 7.2404 -2.2794 36 1 5.8274 6.2842 -1.6877 37 1 5.7948 4.4025 -3.3022 38 1 5.8670 5.5600 -4.6526 39 1 7.2409 5.4147 -3.5299 40 1 5.6066 8.6063 -2.5290 41 1 7.1311 7.8698 -3.0792 42 1 5.7572 8.0148 -4.2010 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049932752.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:01 Heat of formation + Delta-G solvation = -38.513049 kcal Electronic energy + Delta-G solvation = -22480.879541 eV Core-core repulsion = 19358.350348 eV Total energy + Delta-G solvation = -3122.529192 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.90700 -38.75717 -37.44166 -35.87901 -34.47970 -34.16030 -30.06095 -29.38007 -28.00905 -27.31288 -25.62639 -24.77955 -23.06356 -22.06755 -20.84419 -19.23590 -18.86214 -18.43698 -17.27526 -16.66905 -16.35065 -16.14204 -16.05300 -15.36059 -14.94078 -14.82274 -14.51272 -14.30054 -14.10528 -14.02217 -13.76416 -13.52949 -13.10011 -13.05815 -12.94022 -12.73653 -12.68421 -12.57528 -12.28582 -12.15860 -12.10090 -11.93740 -11.87298 -11.61980 -11.59311 -10.96409 -10.63391 -10.58350 -9.66256 -9.26802 -9.10510 -8.22449 -6.29437 -0.17505 0.98263 1.37834 1.44300 1.50606 1.51721 1.61564 2.25065 2.37047 2.45128 3.09203 3.76436 3.94520 4.00593 4.05966 4.17687 4.23840 4.46615 4.53636 4.57968 4.65316 4.66765 4.75968 4.82467 4.89050 4.90962 4.99779 5.00099 5.03845 5.05662 5.10683 5.22133 5.28365 5.34643 5.39868 5.43596 5.47571 5.64088 5.72846 5.82240 5.94404 6.46314 6.74059 7.23496 7.35129 8.81196 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.012642 B = 0.007369 C = 0.005283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.367986 B = 3798.809624 C = 5298.877136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.050 4.050 3 C -0.277 4.277 4 C -0.170 4.170 5 C -0.075 4.075 6 C -0.325 4.325 7 C 0.582 3.418 8 O -0.594 6.594 9 N -0.594 5.594 10 C 0.239 3.761 11 C -0.544 4.544 12 H 0.048 0.952 13 C 0.052 3.948 14 N -0.894 5.894 15 Si 0.930 3.070 16 H -0.274 1.274 17 H -0.272 1.272 18 H -0.275 1.275 19 C 0.123 3.877 20 C -0.106 4.106 21 C -0.140 4.140 22 C -0.134 4.134 23 S 0.354 5.646 24 H 0.037 0.963 25 H 0.081 0.919 26 H 0.059 0.941 27 H 0.095 0.905 28 H 0.069 0.931 29 H 0.151 0.849 30 H 0.141 0.859 31 H 0.047 0.953 32 H 0.038 0.962 33 H 0.273 0.727 34 H 0.084 0.916 35 H 0.063 0.937 36 H 0.049 0.951 37 H 0.035 0.965 38 H 0.060 0.940 39 H 0.068 0.932 40 H 0.054 0.946 41 H 0.070 0.930 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.474 -1.778 3.971 5.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.088 4.088 3 C -0.397 4.397 4 C -0.199 4.199 5 C -0.110 4.110 6 C -0.446 4.446 7 C 0.372 3.628 8 O -0.479 6.479 9 N -0.323 5.323 10 C 0.116 3.884 11 C -0.585 4.585 12 H 0.066 0.934 13 C -0.152 4.152 14 N -0.531 5.531 15 Si 0.755 3.245 16 H -0.199 1.199 17 H -0.197 1.197 18 H -0.200 1.200 19 C 0.001 3.999 20 C -0.126 4.126 21 C -0.197 4.197 22 C -0.192 4.192 23 S 0.630 5.370 24 H 0.056 0.944 25 H 0.100 0.900 26 H 0.078 0.922 27 H 0.114 0.886 28 H 0.088 0.912 29 H 0.169 0.831 30 H 0.158 0.842 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.083 0.917 34 H 0.103 0.897 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.054 0.946 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.089 0.911 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.484 -1.826 2.647 4.063 hybrid contribution -0.952 0.349 1.258 1.615 sum 1.532 -1.476 3.904 4.447 Atomic orbital electron populations 1.21779 0.94099 1.02771 1.01645 1.20112 0.96397 0.88794 1.03532 1.26024 1.06386 1.03944 1.03352 1.19828 1.06627 0.93576 0.99884 1.20661 0.98957 0.97135 0.94266 1.24731 1.19441 1.01055 0.99398 1.17304 0.76643 0.86588 0.82270 1.90647 1.56759 1.41362 1.59135 1.48070 1.62963 1.15125 1.06108 1.19508 0.96382 0.83270 0.89252 1.21458 0.93429 1.14108 1.29494 0.93354 1.25272 1.00719 0.94575 0.94636 1.69944 1.35988 1.15971 1.31159 0.85970 0.81669 0.78085 0.78774 1.19935 1.19671 1.20035 1.21571 0.94256 0.84795 0.99298 1.21426 0.94179 0.97551 0.99401 1.21810 1.00728 0.97679 0.99483 1.21694 1.01523 0.94205 1.01740 1.85979 1.53390 0.98165 0.99420 0.94370 0.90006 0.92193 0.88620 0.91236 0.83121 0.84171 0.93473 0.94538 0.91749 0.89748 0.91901 0.93245 0.94589 0.92082 0.91338 0.92681 0.91144 0.91478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.64 9.90 71.98 0.71 -2.93 16 2 C -0.05 -1.35 6.37 29.85 0.19 -1.16 16 3 C -0.28 -9.54 5.53 24.68 0.14 -9.41 16 4 C -0.17 -5.66 10.00 21.09 0.21 -5.45 16 5 C -0.07 -2.88 10.02 21.72 0.22 -2.66 16 6 C -0.33 -14.24 6.23 24.08 0.15 -14.09 16 7 C 0.58 27.20 7.52 86.42 0.65 27.85 16 8 O -0.59 -29.57 16.51 -4.34 -0.07 -29.64 16 9 N -0.59 -26.05 2.22 -830.97 -1.84 -27.89 16 10 C 0.24 11.01 3.61 85.63 0.31 11.32 16 11 C -0.54 -26.82 6.94 25.60 0.18 -26.64 16 12 H 0.05 2.54 7.81 -2.91 -0.02 2.52 16 13 C 0.05 2.53 5.01 84.66 0.42 2.95 16 14 N -0.89 -44.09 13.29 21.45 0.28 -43.81 16 15 Si 0.93 39.39 29.54 68.60 2.03 41.41 16 16 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 17 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 18 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 19 C 0.12 4.62 4.77 86.38 0.41 5.03 16 20 C -0.11 -3.37 3.09 -10.80 -0.03 -3.41 16 21 C -0.14 -4.25 8.38 71.98 0.60 -3.64 16 22 C -0.13 -3.26 9.19 71.98 0.66 -2.60 16 23 S 0.35 14.76 15.79 -56.49 -0.89 13.87 16 24 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 27 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.15 4.02 8.06 -2.91 -0.02 4.00 16 30 H 0.14 5.12 8.06 -2.91 -0.02 5.09 16 31 H 0.05 2.23 6.96 -2.39 -0.02 2.21 16 32 H 0.04 1.78 4.50 -21.20 -0.10 1.69 16 33 H 0.27 12.80 8.31 -92.71 -0.77 12.03 16 34 H 0.08 3.02 8.02 -2.39 -0.02 3.00 16 35 H 0.06 2.43 7.57 -2.39 -0.02 2.42 16 36 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.03 1.26 6.46 -2.38 -0.02 1.24 16 38 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 39 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -56.69 350.53 5.23 -51.46 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: 0.90 Total: 19.42 kcal Atomic # 6 Polarization: -29.65 SS G_CDS: 4.82 Total: -24.83 kcal Atomic # 7 Polarization: -70.14 SS G_CDS: -1.56 Total: -71.69 kcal Atomic # 8 Polarization: -29.57 SS G_CDS: -0.07 Total: -29.64 kcal Atomic # 14 Polarization: 39.39 SS G_CDS: 2.03 Total: 41.41 kcal Atomic # 16 Polarization: 14.76 SS G_CDS: -0.89 Total: 13.87 kcal Total: -56.69 5.23 -51.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049932752.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.951 kcal (2) G-P(sol) polarization free energy of solvation -56.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds