Wall clock time and date at job start Tue Mar 31 2020 06:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50698 * 109.47204 * 2 1 4 4 C 1.38125 * 120.03654 * 264.97798 * 3 2 1 5 5 C 1.38268 * 120.07292 * 180.02562 * 4 3 2 6 6 C 1.38310 * 120.14911 * 359.97438 * 5 4 3 7 7 C 1.38082 * 120.07307 * 0.02562 * 6 5 4 8 8 C 1.38884 * 120.03880 * 84.99302 * 3 2 1 9 9 N 1.39809 * 120.07181 * 0.02562 * 8 3 2 10 10 C 1.34772 * 119.99656 * 145.46641 * 9 8 3 11 11 O 1.21607 * 120.00447 * 4.17006 * 10 9 8 12 12 C 1.47596 * 119.99866 * 184.16677 * 10 9 8 13 13 C 1.40036 * 119.89561 * 359.73090 * 12 10 9 14 14 C 1.36304 * 120.10372 * 179.71310 * 13 12 10 15 15 C 1.40900 * 119.89356 * 0.57974 * 14 13 12 16 16 C 1.41087 * 120.10432 * 179.67138 * 15 14 13 17 17 H 1.08000 * 120.00278 * 214.73420 * 16 15 14 18 18 C 1.40234 * 119.99632 * 34.73212 * 16 15 14 19 19 N 1.30639 * 120.00406 * 355.74148 * 18 16 15 20 20 Si 1.86802 * 119.99860 * 175.73922 * 18 16 15 21 21 H 1.48495 * 109.47247 * 89.99665 * 20 18 16 22 22 H 1.48502 * 109.47355 * 210.00118 * 20 18 16 23 23 H 1.48508 * 109.47159 * 330.00081 * 20 18 16 24 24 C 1.40897 * 119.79611 * 359.69532 * 15 14 13 25 25 C 1.36300 * 119.89474 * 359.97438 * 24 15 14 26 26 H 1.09004 * 109.47326 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47220 * 300.00489 * 1 2 3 28 28 H 1.09003 * 109.46790 * 60.00832 * 1 2 3 29 29 H 1.08999 * 109.47245 * 239.99960 * 2 1 3 30 30 H 1.09004 * 109.46779 * 119.99954 * 2 1 3 31 31 H 1.07995 * 119.96177 * 0.02562 * 4 3 2 32 32 H 1.08002 * 119.92053 * 180.02562 * 5 4 3 33 33 H 1.08003 * 119.95855 * 180.27333 * 6 5 4 34 34 H 1.07995 * 120.03377 * 180.02562 * 7 6 5 35 35 H 0.96995 * 120.00428 * 325.46797 * 9 8 3 36 36 H 1.07996 * 119.94663 * 359.97438 * 13 12 10 37 37 H 1.07997 * 120.05637 * 180.26691 * 14 13 12 38 38 H 0.96996 * 120.00282 * 180.02562 * 19 18 16 39 39 H 1.08007 * 120.05513 * 179.97438 * 24 15 14 40 40 H 1.08002 * 119.95231 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3615 2.0377 -1.1912 5 6 2.8230 3.3411 -1.1920 6 6 2.9562 4.0317 -0.0010 7 6 2.6289 3.4208 1.1933 8 6 2.1652 2.1112 1.1977 9 7 1.8337 1.4895 2.4053 10 6 2.5338 1.7703 3.5221 11 8 3.4036 2.6197 3.4971 12 6 2.2446 1.0469 4.7757 13 6 1.2386 0.0731 4.8036 14 6 0.9720 -0.6016 5.9575 15 6 1.7022 -0.3094 7.1265 16 6 1.4252 -1.0003 8.3251 17 1 1.5083 -0.4908 9.2737 18 6 1.0419 -2.3486 8.2846 19 7 0.8605 -2.9420 7.1350 20 14 0.7908 -3.2964 9.8747 21 1 -0.6224 -3.1651 10.3112 22 1 1.1091 -4.7297 9.6522 23 1 1.6862 -2.7477 10.9247 24 6 2.7095 0.6752 7.0951 25 6 2.9737 1.3400 5.9350 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.2583 1.5015 -2.1229 32 1 3.0793 3.8213 -2.1249 33 1 3.3127 5.0511 -0.0056 34 1 2.7327 3.9607 2.1228 35 1 1.1000 0.8560 2.4392 36 1 0.6760 -0.1465 3.9083 37 1 0.1989 -1.3555 5.9770 38 1 0.5951 -3.8745 7.1070 39 1 3.2715 0.9028 7.9889 40 1 3.7453 2.0952 5.9099 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058242932.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:03 Heat of formation + Delta-G solvation = -17.694522 kcal Electronic energy + Delta-G solvation = -22431.462960 eV Core-core repulsion = 19174.392576 eV Total energy + Delta-G solvation = -3257.070385 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.67856 -39.91044 -38.79845 -35.94547 -35.61980 -34.74678 -32.30388 -31.35744 -30.74596 -29.91411 -27.67071 -24.81285 -24.56371 -23.18982 -22.79411 -21.75292 -21.17672 -19.41463 -18.96843 -17.98415 -17.22954 -16.81231 -16.43872 -16.10553 -15.79848 -15.38307 -15.11279 -14.99526 -14.64279 -14.49583 -14.42992 -14.06094 -13.95442 -13.65663 -13.34928 -13.05950 -12.85797 -12.77662 -12.61719 -12.56655 -12.35665 -11.86522 -11.84757 -11.75781 -11.43957 -11.26771 -11.18108 -10.69754 -9.66477 -9.63855 -9.40163 -8.98088 -8.67766 -6.54972 0.15108 0.46929 0.57378 1.09362 1.40507 1.42350 1.54063 2.05146 2.17890 2.20060 2.74748 2.91077 3.60061 3.82615 3.92988 4.02651 4.21066 4.27258 4.31875 4.39446 4.46967 4.52414 4.61679 4.65596 4.79063 4.89002 5.01966 5.06597 5.08210 5.10594 5.16513 5.26918 5.37083 5.43072 5.53691 5.58023 5.64054 5.66081 5.75841 5.89544 5.98812 6.15946 6.20768 6.50301 6.54481 6.77645 6.84766 7.24671 8.23178 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.026156 B = 0.003414 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.250114 B = 8198.864369 C = 9125.868109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.117 4.117 4 C -0.100 4.100 5 C -0.134 4.134 6 C -0.115 4.115 7 C -0.149 4.149 8 C 0.129 3.871 9 N -0.666 5.666 10 C 0.570 3.430 11 O -0.579 6.579 12 C -0.282 4.282 13 C -0.059 4.059 14 C -0.183 4.183 15 C 0.101 3.899 16 C -0.477 4.477 17 H 0.084 0.916 18 C 0.032 3.968 19 N -0.814 5.814 20 Si 0.992 3.008 21 H -0.258 1.258 22 H -0.267 1.267 23 H -0.260 1.260 24 C -0.239 4.239 25 C -0.036 4.036 26 H 0.073 0.927 27 H 0.042 0.958 28 H 0.068 0.932 29 H 0.095 0.905 30 H 0.056 0.944 31 H 0.155 0.845 32 H 0.153 0.847 33 H 0.139 0.861 34 H 0.111 0.889 35 H 0.415 0.585 36 H 0.121 0.879 37 H 0.125 0.875 38 H 0.293 0.707 39 H 0.109 0.891 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.542 2.418 -13.800 14.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.119 4.119 4 C -0.118 4.118 5 C -0.152 4.152 6 C -0.133 4.133 7 C -0.169 4.169 8 C 0.035 3.965 9 N -0.311 5.311 10 C 0.365 3.635 11 O -0.462 6.462 12 C -0.287 4.287 13 C -0.078 4.078 14 C -0.203 4.203 15 C 0.098 3.902 16 C -0.505 4.505 17 H 0.102 0.898 18 C -0.184 4.184 19 N -0.439 5.439 20 Si 0.813 3.187 21 H -0.183 1.183 22 H -0.191 1.191 23 H -0.184 1.184 24 C -0.258 4.258 25 C -0.056 4.056 26 H 0.092 0.908 27 H 0.061 0.939 28 H 0.087 0.913 29 H 0.114 0.886 30 H 0.075 0.925 31 H 0.172 0.828 32 H 0.171 0.829 33 H 0.157 0.843 34 H 0.129 0.871 35 H 0.254 0.746 36 H 0.139 0.861 37 H 0.142 0.858 38 H 0.104 0.896 39 H 0.127 0.873 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.020 2.734 -13.867 14.278 hybrid contribution -0.195 -0.570 1.080 1.236 sum -2.216 2.163 -12.788 13.157 Atomic orbital electron populations 1.21766 0.93703 1.02757 1.02085 1.20543 0.96962 0.91377 1.03464 1.19992 1.03117 0.97027 0.91810 1.21207 0.98123 0.95288 0.97213 1.21452 1.00308 0.95000 0.98484 1.21277 0.99494 1.00802 0.91723 1.21332 1.02268 0.93785 0.99515 1.17964 1.00976 0.92124 0.85452 1.43356 1.35377 1.45585 1.06780 1.18583 0.79786 0.81353 0.83774 1.90623 1.34761 1.35074 1.85726 1.19148 1.08252 1.07857 0.93409 1.20776 0.95331 0.93972 0.97750 1.21279 1.02767 1.02836 0.93368 1.18210 0.88312 0.89431 0.94289 1.20057 1.39879 0.96274 0.94341 0.89757 1.26909 0.91220 0.98678 1.01613 1.69698 1.32399 1.13694 1.28155 0.85028 0.79811 0.77112 0.76796 1.18277 1.19133 1.18358 1.20998 1.02444 1.04684 0.97713 1.20528 0.96518 0.96434 0.92079 0.90831 0.93921 0.91320 0.88642 0.92519 0.82765 0.82899 0.84324 0.87081 0.74615 0.86133 0.85756 0.89562 0.87332 0.87557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.82 71.98 0.71 -1.95 16 2 C -0.09 -1.82 5.47 29.85 0.16 -1.66 16 3 C -0.12 -2.99 5.15 -19.74 -0.10 -3.09 16 4 C -0.10 -2.06 9.68 22.25 0.22 -1.84 16 5 C -0.13 -2.73 10.04 22.29 0.22 -2.51 16 6 C -0.11 -2.92 10.04 22.25 0.22 -2.70 16 7 C -0.15 -4.95 8.69 22.40 0.19 -4.76 16 8 C 0.13 4.20 6.29 38.19 0.24 4.44 16 9 N -0.67 -23.31 4.73 -306.30 -1.45 -24.76 16 10 C 0.57 24.43 7.61 86.71 0.66 25.09 16 11 O -0.58 -27.53 13.73 -4.05 -0.06 -27.59 16 12 C -0.28 -12.82 5.89 -19.93 -0.12 -12.94 16 13 C -0.06 -2.59 9.47 22.25 0.21 -2.38 16 14 C -0.18 -8.96 8.61 22.47 0.19 -8.77 16 15 C 0.10 5.17 5.55 -21.28 -0.12 5.05 16 16 C -0.48 -23.93 9.03 23.45 0.21 -23.72 16 17 H 0.08 4.05 7.85 -2.91 -0.02 4.02 16 18 C 0.03 1.49 5.42 85.36 0.46 1.95 16 19 N -0.81 -38.84 10.59 21.87 0.23 -38.60 16 20 Si 0.99 35.14 29.56 68.60 2.03 37.17 16 21 H -0.26 -8.76 7.11 99.48 0.71 -8.06 16 22 H -0.27 -9.04 7.11 99.48 0.71 -8.33 16 23 H -0.26 -9.11 7.11 99.48 0.71 -8.41 16 24 C -0.24 -11.65 9.73 22.47 0.22 -11.44 16 25 C -0.04 -1.72 9.52 22.26 0.21 -1.51 16 26 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.04 0.86 7.29 -2.39 -0.02 0.85 16 28 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.10 1.59 8.05 -2.39 -0.02 1.57 16 30 H 0.06 1.39 7.43 -2.38 -0.02 1.37 16 31 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 32 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 33 H 0.14 2.89 8.06 -2.91 -0.02 2.86 16 34 H 0.11 4.29 6.19 -2.91 -0.02 4.27 16 35 H 0.41 12.74 5.04 -92.71 -0.47 12.27 16 36 H 0.12 4.33 6.38 -2.91 -0.02 4.31 16 37 H 0.12 6.22 6.13 -2.91 -0.02 6.20 16 38 H 0.29 12.54 8.29 -92.71 -0.77 11.77 16 39 H 0.11 4.94 8.06 -2.91 -0.02 4.92 16 40 H 0.11 4.87 7.63 -2.91 -0.02 4.84 16 Total: -1.00 -60.86 334.76 5.15 -55.71 By element: Atomic # 1 Polarization: 40.19 SS G_CDS: 0.60 Total: 40.79 kcal Atomic # 6 Polarization: -46.52 SS G_CDS: 3.80 Total: -42.72 kcal Atomic # 7 Polarization: -62.15 SS G_CDS: -1.22 Total: -63.36 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -0.06 Total: -27.59 kcal Atomic # 14 Polarization: 35.14 SS G_CDS: 2.03 Total: 37.17 kcal Total: -60.86 5.15 -55.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058242932.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.015 kcal (2) G-P(sol) polarization free energy of solvation -60.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds