Wall clock time and date at job start Tue Mar 31 2020 08:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47451 * 2 1 4 4 N 1.46506 * 109.47288 * 119.99968 * 2 1 3 5 5 C 1.46499 * 119.99537 * 300.00127 * 4 2 1 6 6 C 1.50697 * 109.46949 * 269.99553 * 5 4 2 7 7 H 1.08004 * 120.00186 * 0.02562 * 6 5 4 8 8 C 1.37881 * 120.00081 * 180.02562 * 6 5 4 9 9 N 1.31519 * 120.00096 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00103 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47135 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47061 * 119.99902 * 10 8 6 13 13 H 1.48503 * 109.47075 * 240.00004 * 10 8 6 14 14 C 1.34777 * 120.00264 * 119.99477 * 4 2 1 15 15 O 1.21283 * 119.99750 * 180.02562 * 14 4 2 16 16 C 1.50702 * 119.99928 * 0.28128 * 14 4 2 17 17 O 1.42899 * 109.46876 * 179.72354 * 16 14 4 18 18 C 1.35897 * 116.99793 * 179.97438 * 17 16 14 19 19 C 1.38778 * 120.04357 * 359.72176 * 18 17 16 20 20 C 1.38131 * 119.99403 * 179.74934 * 19 18 17 21 21 C 1.38250 * 120.07826 * 0.52819 * 20 19 18 22 22 C 1.38474 * 120.08843 * 359.74686 * 21 20 19 23 23 F 1.35100 * 119.99736 * 180.02562 * 22 21 20 24 24 C 1.38382 * 120.00251 * 359.97438 * 22 21 20 25 25 H 1.09005 * 109.47280 * 300.00296 * 1 2 3 26 26 H 1.09002 * 109.46985 * 60.00287 * 1 2 3 27 27 H 1.09000 * 109.47344 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47280 * 239.99704 * 2 1 3 29 29 H 1.09006 * 109.47195 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.46792 * 299.99831 * 3 2 1 31 31 H 1.08995 * 109.47040 * 59.99763 * 3 2 1 32 32 H 1.09001 * 109.47567 * 29.99407 * 5 4 2 33 33 H 1.09005 * 109.47076 * 149.99913 * 5 4 2 34 34 H 0.96991 * 119.99957 * 180.02562 * 9 8 6 35 35 H 1.09004 * 109.46965 * 299.72211 * 16 14 4 36 36 H 1.08994 * 109.46990 * 59.72065 * 16 14 4 37 37 H 1.07997 * 119.99649 * 0.02562 * 19 18 17 38 38 H 1.07998 * 119.96155 * 180.27265 * 20 19 18 39 39 H 1.08002 * 119.95596 * 179.76838 * 21 20 19 40 40 H 1.08003 * 120.03986 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6643 -0.1900 2.5267 6 6 2.7031 0.8018 2.9829 7 1 3.5427 1.0363 2.3454 8 6 2.5816 1.4101 4.2143 9 7 1.5594 1.1244 4.9910 10 14 3.8688 2.6402 4.7796 11 1 4.9098 2.7848 3.7303 12 1 3.2237 3.9555 5.0220 13 1 4.4967 2.1576 6.0359 14 6 2.7931 -1.7865 1.0726 15 8 3.1970 -2.3584 2.0629 16 6 3.1623 -2.2978 -0.2961 17 8 3.9880 -3.4566 -0.1649 18 6 4.4114 -4.0458 -1.3140 19 6 4.0346 -3.5224 -2.5428 20 6 4.4698 -4.1191 -3.7102 21 6 5.2716 -5.2440 -3.6562 22 6 5.6448 -5.7724 -2.4319 23 9 6.4288 -6.8715 -2.3813 24 6 5.2156 -5.1741 -1.2602 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1301 1.4424 -0.0005 30 1 1.6767 1.9562 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 0.6904 0.2975 2.4843 33 1 1.6237 -1.0226 3.2292 34 1 1.4738 1.5525 5.8571 35 1 2.2562 -2.5573 -0.8436 36 1 3.7055 -1.5241 -0.8386 37 1 3.4050 -2.6461 -2.5863 38 1 4.1799 -3.7087 -4.6662 39 1 5.6076 -5.7111 -4.5702 40 1 5.5067 -5.5855 -0.3050 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000059408649.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:59 Heat of formation + Delta-G solvation = -91.416932 kcal Electronic energy + Delta-G solvation = -23503.648011 eV Core-core repulsion = 19812.611558 eV Total energy + Delta-G solvation = -3691.036453 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.10126 -40.40900 -39.09922 -37.25381 -35.97658 -32.90354 -31.29140 -30.95711 -30.11474 -28.96880 -26.90937 -26.52678 -23.26443 -23.06022 -22.18708 -21.35657 -18.81962 -18.39606 -17.02182 -16.60902 -16.53988 -16.37058 -16.20985 -15.78084 -15.67508 -15.16582 -14.53127 -14.14278 -14.01051 -13.81290 -13.57746 -13.16091 -12.83360 -12.76317 -12.41958 -12.15024 -12.06570 -11.77625 -11.66306 -11.33814 -11.22055 -11.12859 -10.96212 -10.90893 -10.64968 -10.46957 -10.07689 -9.58928 -9.10572 -9.01644 -8.48755 -8.45837 -7.78137 -6.07332 -4.10914 0.90515 1.08274 2.70379 3.19826 3.27798 3.36438 3.37733 3.40016 3.86115 4.18641 4.41915 4.49602 4.72628 4.78130 4.80159 4.96582 5.10401 5.12872 5.14413 5.18292 5.27546 5.44571 5.51981 5.71387 5.85956 5.90769 6.00122 6.04250 6.08389 6.14921 6.27817 6.48292 6.49820 6.87043 6.97048 7.20247 7.39164 7.47052 7.89078 8.19408 8.27399 8.82743 8.97480 9.53401 11.00969 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.020975 B = 0.003474 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.616911 B = 8057.386189 C = 8708.173220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.131 3.869 3 C -0.158 4.158 4 N -0.588 5.588 5 C 0.247 3.753 6 C -0.522 4.522 7 H 0.059 0.941 8 C 0.061 3.939 9 N -0.894 5.894 10 Si 0.896 3.104 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.507 3.493 15 O -0.516 6.516 16 C 0.040 3.960 17 O -0.281 6.281 18 C 0.167 3.833 19 C -0.223 4.223 20 C -0.050 4.050 21 C -0.199 4.199 22 C 0.138 3.862 23 F -0.136 7.136 24 C -0.190 4.190 25 H 0.071 0.929 26 H 0.060 0.940 27 H 0.053 0.947 28 H 0.070 0.930 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.083 0.917 32 H 0.038 0.962 33 H 0.043 0.957 34 H 0.263 0.737 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.344 -6.668 -19.486 20.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.027 3.973 3 C -0.216 4.216 4 N -0.322 5.322 5 C 0.129 3.871 6 C -0.561 4.561 7 H 0.078 0.922 8 C -0.141 4.141 9 N -0.533 5.533 10 Si 0.724 3.276 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.209 1.209 14 C 0.291 3.709 15 O -0.392 6.392 16 C -0.039 4.039 17 O -0.192 6.192 18 C 0.120 3.880 19 C -0.242 4.242 20 C -0.068 4.068 21 C -0.218 4.218 22 C 0.119 3.881 23 F -0.114 7.114 24 C -0.209 4.209 25 H 0.090 0.910 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.102 0.898 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.153 0.847 38 H 0.153 0.847 39 H 0.153 0.847 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.533 -7.014 -18.533 19.875 hybrid contribution 0.722 0.727 0.187 1.041 sum 2.255 -6.287 -18.346 19.524 Atomic orbital electron populations 1.22168 0.95208 1.01966 1.02747 1.21050 0.94490 0.94412 0.87387 1.22153 1.01441 0.95418 1.02591 1.48293 1.48972 1.25795 1.09125 1.19306 0.96072 0.95091 0.76653 1.21461 1.08957 1.23433 1.02201 0.92233 1.24928 0.95763 0.97137 0.96292 1.69935 1.29504 1.43233 1.10665 0.86476 0.81592 0.80723 0.78844 1.19810 1.21009 1.20905 1.19654 0.80347 0.81754 0.89142 1.90734 1.52167 1.57402 1.38855 1.22785 0.94957 0.87213 0.98947 1.86219 1.64021 1.41493 1.27516 1.18742 0.92287 0.91541 0.85472 1.21382 1.06879 1.04107 0.91866 1.20762 0.94315 0.93540 0.98148 1.21011 1.04300 0.99870 0.96576 1.17268 0.92382 0.84703 0.93740 1.91512 1.71831 1.50758 1.97314 1.20295 1.03854 0.97851 0.98940 0.91039 0.92070 0.92813 0.91220 0.92647 0.93067 0.89791 0.94400 0.93888 0.92771 0.89424 0.89265 0.84655 0.84672 0.84729 0.83659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 9.17 37.15 0.34 -1.81 16 2 C 0.13 1.93 3.17 -67.93 -0.22 1.72 16 3 C -0.16 -2.39 8.47 37.16 0.31 -2.07 16 4 N -0.59 -11.71 2.39 -167.47 -0.40 -12.11 16 5 C 0.25 6.15 4.59 -5.20 -0.02 6.13 16 6 C -0.52 -14.12 7.83 -34.44 -0.27 -14.39 16 7 H 0.06 1.61 7.63 -52.48 -0.40 1.21 16 8 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 9 N -0.89 -25.96 13.29 55.43 0.74 -25.22 16 10 Si 0.90 21.49 29.54 -169.99 -5.02 16.46 16 11 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 14 C 0.51 10.35 7.75 -10.98 -0.09 10.27 16 15 O -0.52 -13.26 16.08 -14.35 -0.23 -13.49 16 16 C 0.04 0.58 3.53 36.01 0.13 0.71 16 17 O -0.28 -4.60 9.67 -39.32 -0.38 -4.98 16 18 C 0.17 2.21 6.69 -39.22 -0.26 1.95 16 19 C -0.22 -2.29 9.04 -39.42 -0.36 -2.65 16 20 C -0.05 -0.42 10.04 -39.62 -0.40 -0.82 16 21 C -0.20 -1.86 10.02 -39.49 -0.40 -2.26 16 22 C 0.14 1.59 7.30 -39.44 -0.29 1.30 16 23 F -0.14 -1.60 17.27 2.25 0.04 -1.57 16 24 C -0.19 -2.44 9.97 -39.37 -0.39 -2.83 16 25 H 0.07 1.10 6.66 -51.93 -0.35 0.76 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.79 5.77 -51.93 -0.30 0.49 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 1.53 6.92 -51.93 -0.36 1.17 16 32 H 0.04 0.94 6.43 -51.93 -0.33 0.61 16 33 H 0.04 1.24 7.42 -51.93 -0.39 0.85 16 34 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.09 1.00 7.29 -51.93 -0.38 0.62 16 36 H 0.09 1.09 7.32 -51.93 -0.38 0.71 16 37 H 0.14 1.11 6.30 -52.49 -0.33 0.78 16 38 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 39 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 40 H 0.15 1.85 8.06 -52.48 -0.42 1.42 16 LS Contribution 339.35 15.07 5.11 5.11 Total: -1.00 -32.81 339.35 -7.45 -40.26 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -5.31 Total: -1.30 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: -2.00 Total: -3.17 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: 0.34 Total: -37.33 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.61 Total: -18.47 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.81 -7.45 -40.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059408649.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.158 kcal (2) G-P(sol) polarization free energy of solvation -32.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds