Wall clock time and date at job start Tue Mar 31 2020 08:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47451 * 2 1 4 4 N 1.46506 * 109.47288 * 119.99968 * 2 1 3 5 5 C 1.46499 * 119.99537 * 300.00127 * 4 2 1 6 6 C 1.50697 * 109.46949 * 269.99553 * 5 4 2 7 7 H 1.08004 * 120.00186 * 0.02562 * 6 5 4 8 8 C 1.37881 * 120.00081 * 180.02562 * 6 5 4 9 9 N 1.31519 * 120.00096 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00103 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47135 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47061 * 119.99902 * 10 8 6 13 13 H 1.48503 * 109.47075 * 240.00004 * 10 8 6 14 14 C 1.34777 * 120.00264 * 119.99477 * 4 2 1 15 15 O 1.21283 * 119.99750 * 180.02562 * 14 4 2 16 16 C 1.50702 * 119.99928 * 0.28128 * 14 4 2 17 17 O 1.42899 * 109.46876 * 179.72354 * 16 14 4 18 18 C 1.35897 * 116.99793 * 179.97438 * 17 16 14 19 19 C 1.38778 * 120.04357 * 359.72176 * 18 17 16 20 20 C 1.38131 * 119.99403 * 179.74934 * 19 18 17 21 21 C 1.38250 * 120.07826 * 0.52819 * 20 19 18 22 22 C 1.38474 * 120.08843 * 359.74686 * 21 20 19 23 23 F 1.35100 * 119.99736 * 180.02562 * 22 21 20 24 24 C 1.38382 * 120.00251 * 359.97438 * 22 21 20 25 25 H 1.09005 * 109.47280 * 300.00296 * 1 2 3 26 26 H 1.09002 * 109.46985 * 60.00287 * 1 2 3 27 27 H 1.09000 * 109.47344 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47280 * 239.99704 * 2 1 3 29 29 H 1.09006 * 109.47195 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.46792 * 299.99831 * 3 2 1 31 31 H 1.08995 * 109.47040 * 59.99763 * 3 2 1 32 32 H 1.09001 * 109.47567 * 29.99407 * 5 4 2 33 33 H 1.09005 * 109.47076 * 149.99913 * 5 4 2 34 34 H 0.96991 * 119.99957 * 180.02562 * 9 8 6 35 35 H 1.09004 * 109.46965 * 299.72211 * 16 14 4 36 36 H 1.08994 * 109.46990 * 59.72065 * 16 14 4 37 37 H 1.07997 * 119.99649 * 0.02562 * 19 18 17 38 38 H 1.07998 * 119.96155 * 180.27265 * 20 19 18 39 39 H 1.08002 * 119.95596 * 179.76838 * 21 20 19 40 40 H 1.08003 * 120.03986 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6643 -0.1900 2.5267 6 6 2.7031 0.8018 2.9829 7 1 3.5427 1.0363 2.3454 8 6 2.5816 1.4101 4.2143 9 7 1.5594 1.1244 4.9910 10 14 3.8688 2.6402 4.7796 11 1 4.9098 2.7848 3.7303 12 1 3.2237 3.9555 5.0220 13 1 4.4967 2.1576 6.0359 14 6 2.7931 -1.7865 1.0726 15 8 3.1970 -2.3584 2.0629 16 6 3.1623 -2.2978 -0.2961 17 8 3.9880 -3.4566 -0.1649 18 6 4.4114 -4.0458 -1.3140 19 6 4.0346 -3.5224 -2.5428 20 6 4.4698 -4.1191 -3.7102 21 6 5.2716 -5.2440 -3.6562 22 6 5.6448 -5.7724 -2.4319 23 9 6.4288 -6.8715 -2.3813 24 6 5.2156 -5.1741 -1.2602 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1301 1.4424 -0.0005 30 1 1.6767 1.9562 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 0.6904 0.2975 2.4843 33 1 1.6237 -1.0226 3.2292 34 1 1.4738 1.5525 5.8571 35 1 2.2562 -2.5573 -0.8436 36 1 3.7055 -1.5241 -0.8386 37 1 3.4050 -2.6461 -2.5863 38 1 4.1799 -3.7087 -4.6662 39 1 5.6076 -5.7111 -4.5702 40 1 5.5067 -5.5855 -0.3050 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000059408649.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:58 Heat of formation + Delta-G solvation = -111.205524 kcal Electronic energy + Delta-G solvation = -23504.506108 eV Core-core repulsion = 19812.611558 eV Total energy + Delta-G solvation = -3691.894551 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.97687 -41.52536 -40.45914 -38.25403 -37.50192 -34.95198 -32.47338 -32.16513 -31.05651 -30.35554 -28.34825 -27.88491 -24.95319 -23.96034 -23.30426 -22.63994 -19.94011 -19.66299 -18.63245 -18.28448 -17.54876 -17.41178 -17.24638 -16.85111 -16.73463 -16.62031 -16.14576 -15.58460 -15.16467 -14.86026 -14.71141 -14.43642 -14.35152 -13.93824 -13.67889 -13.35756 -13.32475 -13.18165 -12.86770 -12.76616 -12.75799 -12.52407 -12.23423 -12.12677 -12.10236 -12.03335 -11.67694 -11.51819 -10.64853 -10.61623 -9.92486 -9.50203 -9.34497 -8.20661 -6.32140 0.10545 0.27428 1.35288 1.38388 1.48143 1.56099 1.68255 2.36905 2.57672 2.58679 3.09853 3.34222 3.44914 3.78039 3.86306 4.00258 4.04359 4.07401 4.11458 4.28246 4.30350 4.40506 4.41775 4.83500 4.90545 5.00739 5.01241 5.07842 5.09120 5.13065 5.21880 5.22711 5.33434 5.45666 5.59025 5.63815 5.70135 5.84516 6.09156 6.26081 6.68982 6.77425 7.26897 7.41881 8.87174 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.020975 B = 0.003474 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.616911 B = 8057.386189 C = 8708.173220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.121 3.879 3 C -0.154 4.154 4 N -0.589 5.589 5 C 0.264 3.736 6 C -0.527 4.527 7 H 0.056 0.944 8 C 0.006 3.994 9 N -0.930 5.930 10 Si 0.961 3.039 11 H -0.266 1.266 12 H -0.270 1.270 13 H -0.287 1.287 14 C 0.493 3.507 15 O -0.587 6.587 16 C 0.053 3.947 17 O -0.321 6.321 18 C 0.140 3.860 19 C -0.215 4.215 20 C -0.038 4.038 21 C -0.189 4.189 22 C 0.122 3.878 23 F -0.144 7.144 24 C -0.215 4.215 25 H 0.037 0.963 26 H 0.101 0.899 27 H 0.058 0.942 28 H 0.121 0.879 29 H 0.044 0.956 30 H 0.094 0.906 31 H 0.043 0.957 32 H 0.033 0.967 33 H -0.010 1.010 34 H 0.265 0.735 35 H 0.130 0.870 36 H 0.124 0.876 37 H 0.165 0.835 38 H 0.179 0.821 39 H 0.162 0.838 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.382 -5.473 -24.063 24.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.019 3.981 3 C -0.212 4.212 4 N -0.322 5.322 5 C 0.143 3.857 6 C -0.565 4.565 7 H 0.074 0.926 8 C -0.193 4.193 9 N -0.570 5.570 10 Si 0.786 3.214 11 H -0.190 1.190 12 H -0.195 1.195 13 H -0.213 1.213 14 C 0.281 3.719 15 O -0.468 6.468 16 C -0.025 4.025 17 O -0.234 6.234 18 C 0.095 3.905 19 C -0.234 4.234 20 C -0.056 4.056 21 C -0.207 4.207 22 C 0.103 3.897 23 F -0.122 7.122 24 C -0.234 4.234 25 H 0.056 0.944 26 H 0.120 0.880 27 H 0.077 0.923 28 H 0.139 0.861 29 H 0.063 0.937 30 H 0.113 0.887 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.008 0.992 34 H 0.074 0.926 35 H 0.148 0.852 36 H 0.141 0.859 37 H 0.182 0.818 38 H 0.196 0.804 39 H 0.179 0.821 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.558 -5.800 -23.176 23.942 hybrid contribution 0.694 0.300 1.523 1.700 sum 2.252 -5.500 -21.654 22.455 Atomic orbital electron populations 1.22146 0.93941 1.02456 1.03082 1.21557 0.95590 0.94296 0.86639 1.22106 1.00749 0.95618 1.02742 1.48310 1.48771 1.26116 1.08974 1.18701 0.95548 0.92604 0.78836 1.21702 1.09032 1.23458 1.02342 0.92581 1.25799 0.97781 0.99143 0.96527 1.70054 1.31314 1.44555 1.11109 0.85460 0.79108 0.78774 0.78039 1.19049 1.19480 1.21293 1.20800 0.79024 0.80977 0.91146 1.90693 1.54734 1.59467 1.41860 1.22728 0.97150 0.87926 0.94648 1.86153 1.65027 1.42343 1.29874 1.18927 0.93673 0.92134 0.85809 1.21736 1.06310 1.04548 0.90784 1.21270 0.92580 0.92399 0.99320 1.21420 1.03203 0.99755 0.96359 1.17479 0.93030 0.84910 0.94300 1.91488 1.72155 1.51211 1.97385 1.20352 1.05189 0.98869 0.99037 0.94359 0.88001 0.92287 0.86119 0.93658 0.88695 0.93803 0.94926 0.99154 0.92613 0.85208 0.85889 0.81761 0.80356 0.82076 0.85532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.78 9.17 71.98 0.66 -3.12 16 2 C 0.12 3.24 3.17 44.99 0.14 3.38 16 3 C -0.15 -4.29 8.47 71.98 0.61 -3.68 16 4 N -0.59 -23.63 2.39 -802.14 -1.91 -25.55 16 5 C 0.26 13.87 4.59 85.63 0.39 14.26 16 6 C -0.53 -29.59 7.83 25.60 0.20 -29.39 16 7 H 0.06 3.11 7.63 -2.91 -0.02 3.09 16 8 C 0.01 0.34 5.46 84.66 0.46 0.80 16 9 N -0.93 -56.13 13.29 21.45 0.28 -55.85 16 10 Si 0.96 44.94 29.54 68.60 2.03 46.97 16 11 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 12 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 13 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 14 C 0.49 20.40 7.75 87.66 0.68 21.08 16 15 O -0.59 -32.03 16.08 16.00 0.26 -31.78 16 16 C 0.05 1.42 3.53 71.24 0.25 1.67 16 17 O -0.32 -10.42 9.67 -73.35 -0.71 -11.13 16 18 C 0.14 3.54 6.69 22.50 0.15 3.69 16 19 C -0.22 -3.46 9.04 22.37 0.20 -3.26 16 20 C -0.04 -0.45 10.04 22.25 0.22 -0.23 16 21 C -0.19 -2.85 10.02 22.33 0.22 -2.62 16 22 C 0.12 2.68 7.30 22.36 0.16 2.85 16 23 F -0.14 -3.38 17.27 44.97 0.78 -2.60 16 24 C -0.21 -5.62 9.97 22.41 0.22 -5.40 16 25 H 0.04 1.16 6.66 -2.38 -0.02 1.15 16 26 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.12 2.05 5.77 -2.38 -0.01 2.03 16 29 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 30 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.04 1.57 6.92 -2.39 -0.02 1.56 16 32 H 0.03 1.73 6.43 -2.39 -0.02 1.71 16 33 H -0.01 -0.60 7.42 -2.38 -0.02 -0.62 16 34 H 0.26 15.05 8.31 -92.72 -0.77 14.28 16 35 H 0.13 2.34 7.29 -2.38 -0.02 2.32 16 36 H 0.12 2.44 7.32 -2.39 -0.02 2.42 16 37 H 0.16 1.61 6.30 -2.91 -0.02 1.59 16 38 H 0.18 0.65 8.06 -2.91 -0.02 0.62 16 39 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 40 H 0.13 3.58 8.06 -2.91 -0.02 3.56 16 Total: -1.00 -80.31 339.35 6.35 -73.96 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: 1.05 Total: 5.95 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: 4.59 Total: 0.03 kcal Atomic # 7 Polarization: -79.77 SS G_CDS: -1.63 Total: -81.40 kcal Atomic # 8 Polarization: -42.46 SS G_CDS: -0.45 Total: -42.91 kcal Atomic # 9 Polarization: -3.38 SS G_CDS: 0.78 Total: -2.60 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -80.31 6.35 -73.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059408649.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.250 kcal (2) G-P(sol) polarization free energy of solvation -80.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds