Wall clock time and date at job start Tue Mar 31 2020 08:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35769 * 116.99829 * 2 1 4 4 C 1.38922 * 119.91536 * 359.72715 * 3 2 1 5 5 C 1.37736 * 120.11412 * 180.27280 * 4 3 2 6 6 C 1.39726 * 119.95188 * 0.02562 * 5 4 3 7 7 C 1.47604 * 120.08034 * 179.97438 * 6 5 4 8 8 O 1.21578 * 119.99784 * 133.10324 * 7 6 5 9 9 N 1.34775 * 119.99757 * 313.09434 * 7 6 5 10 10 C 1.46499 * 119.99602 * 182.59800 * 9 7 6 11 11 C 1.50697 * 109.47224 * 90.00317 * 10 9 7 12 12 H 1.07998 * 119.99819 * 0.02562 * 11 10 9 13 13 C 1.37882 * 120.00252 * 179.97438 * 11 10 9 14 14 N 1.31512 * 119.99806 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99974 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47180 * 0.02562 * 15 13 11 17 17 H 1.48509 * 109.46962 * 119.99967 * 15 13 11 18 18 H 1.48500 * 109.47038 * 239.99741 * 15 13 11 19 19 C 1.46494 * 120.00234 * 2.60591 * 9 7 6 20 20 C 1.53004 * 109.47326 * 113.36434 * 19 9 7 21 21 C 1.53008 * 109.46667 * 233.36107 * 19 9 7 22 22 C 1.39735 * 119.83408 * 359.97438 * 6 5 4 23 23 C 1.37897 * 119.88870 * 359.97438 * 22 6 5 24 24 F 1.35099 * 119.98185 * 180.02562 * 23 22 6 25 25 H 1.09002 * 109.47166 * 59.99796 * 1 2 3 26 26 H 1.08996 * 109.47135 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47285 * 299.99988 * 1 2 3 28 28 H 1.08000 * 119.95046 * 0.25248 * 4 3 2 29 29 H 1.07998 * 120.02530 * 180.02562 * 5 4 3 30 30 H 1.09007 * 109.47297 * 210.00766 * 10 9 7 31 31 H 1.09000 * 109.47380 * 330.00419 * 10 9 7 32 32 H 0.96999 * 119.99738 * 179.97438 * 14 13 11 33 33 H 1.08998 * 109.47437 * 353.35811 * 19 9 7 34 34 H 1.09000 * 109.46939 * 59.99638 * 20 19 9 35 35 H 1.09000 * 109.47228 * 179.97438 * 20 19 9 36 36 H 1.08992 * 109.46951 * 299.99934 * 20 19 9 37 37 H 1.09000 * 109.46826 * 60.00496 * 21 19 9 38 38 H 1.09001 * 109.46493 * 179.97438 * 21 19 9 39 39 H 1.08995 * 109.47201 * 299.99545 * 21 19 9 40 40 H 1.08005 * 120.05717 * 180.02562 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 1.2870 2.3737 -0.0057 5 6 1.9080 3.6031 -0.0114 6 6 3.3032 3.6799 -0.0120 7 6 3.9716 4.9959 -0.0187 8 8 4.8885 5.2158 0.7489 9 7 3.5657 5.9535 -0.8757 10 6 4.2657 7.2396 -0.9220 11 6 5.3848 7.1665 -1.9287 12 1 5.5570 6.2535 -2.4792 13 6 6.1881 8.2656 -2.1476 14 7 5.9774 9.3778 -1.4782 15 14 7.5748 8.1751 -3.3959 16 1 7.6000 6.8237 -4.0107 17 1 7.3565 9.1952 -4.4529 18 1 8.8697 8.4350 -2.7170 19 6 2.4245 5.7084 -1.7609 20 6 1.2663 6.6270 -1.3662 21 6 2.8312 5.9937 -3.2081 22 6 4.0639 2.5078 -0.0062 23 6 3.4352 1.2805 0.0005 24 9 4.1689 0.1461 0.0067 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 0.2086 2.3146 -0.0061 29 1 1.3171 4.5070 -0.0155 30 1 3.5664 8.0237 -1.2123 31 1 4.6765 7.4653 0.0621 32 1 6.5427 10.1509 -1.6319 33 1 2.1108 4.6686 -1.6700 34 1 1.5801 7.6669 -1.4572 35 1 0.4173 6.4450 -2.0251 36 1 0.9767 6.4239 -0.3353 37 1 3.6562 5.3392 -3.4894 38 1 1.9821 5.8109 -3.8668 39 1 3.1448 7.0336 -3.2992 40 1 5.1426 2.5630 -0.0062 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060537755.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:36 Heat of formation + Delta-G solvation = -85.089544 kcal Electronic energy + Delta-G solvation = -24223.694801 eV Core-core repulsion = 20532.932724 eV Total energy + Delta-G solvation = -3690.762077 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.79073 -40.44537 -39.29503 -37.03496 -36.05937 -32.88145 -30.97011 -30.89488 -30.54667 -28.05358 -27.01161 -26.70687 -23.80289 -22.99001 -22.33579 -21.17828 -19.06781 -18.23107 -17.41060 -16.98687 -16.47551 -16.32263 -15.76238 -15.29833 -15.14551 -15.01501 -14.45306 -14.41953 -14.10717 -13.60578 -13.50031 -12.99196 -12.83231 -12.54720 -12.32186 -12.20342 -12.08797 -11.70168 -11.63666 -11.40661 -11.28312 -11.14649 -10.94986 -10.84997 -10.58339 -10.36589 -10.04173 -9.55614 -9.10269 -9.04251 -8.43802 -8.24817 -7.70864 -6.04805 -4.08193 0.90991 1.02847 2.88513 3.10983 3.29540 3.37777 3.40856 3.56811 3.90853 4.13654 4.44171 4.51883 4.72843 4.80166 4.84544 4.96444 5.07399 5.16760 5.24534 5.29862 5.40727 5.49495 5.61449 5.70286 5.85603 5.91368 5.95534 6.10184 6.23474 6.25444 6.34787 6.44665 6.58050 6.95582 7.03408 7.07676 7.43824 7.51513 7.91932 8.22856 8.35652 8.86552 9.02303 9.56134 11.03436 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.021168 B = 0.004321 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.420911 B = 6479.071896 C = 7059.488777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.309 6.309 3 C 0.105 3.895 4 C -0.189 4.189 5 C -0.065 4.065 6 C -0.120 4.120 7 C 0.549 3.451 8 O -0.532 6.532 9 N -0.581 5.581 10 C 0.246 3.754 11 C -0.520 4.520 12 H 0.059 0.941 13 C 0.061 3.939 14 N -0.895 5.895 15 Si 0.895 3.105 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.283 1.283 19 C 0.119 3.881 20 C -0.165 4.165 21 C -0.154 4.154 22 C -0.068 4.068 23 C 0.064 3.936 24 F -0.132 7.132 25 H 0.059 0.941 26 H 0.101 0.899 27 H 0.058 0.942 28 H 0.142 0.858 29 H 0.143 0.857 30 H 0.036 0.964 31 H 0.044 0.956 32 H 0.262 0.738 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.052 0.948 37 H 0.057 0.943 38 H 0.048 0.952 39 H 0.079 0.921 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.073 -14.078 0.270 20.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.222 6.222 3 C 0.058 3.942 4 C -0.208 4.208 5 C -0.083 4.083 6 C -0.123 4.123 7 C 0.335 3.665 8 O -0.410 6.410 9 N -0.312 5.312 10 C 0.127 3.873 11 C -0.559 4.559 12 H 0.078 0.922 13 C -0.141 4.141 14 N -0.534 5.534 15 Si 0.723 3.277 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.209 1.209 19 C 0.014 3.986 20 C -0.223 4.223 21 C -0.212 4.212 22 C -0.088 4.088 23 C 0.044 3.956 24 F -0.110 7.110 25 H 0.077 0.923 26 H 0.120 0.880 27 H 0.077 0.923 28 H 0.159 0.841 29 H 0.161 0.839 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.103 0.897 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.098 0.902 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -14.408 -13.969 0.681 20.080 hybrid contribution 0.660 -0.011 -0.758 1.005 sum -13.748 -13.980 -0.077 19.608 Atomic orbital electron populations 1.23133 0.77901 1.04228 1.01680 1.86094 1.21769 1.25921 1.88460 1.19137 0.90713 0.85562 0.98777 1.21027 1.00271 0.91078 1.08403 1.21354 0.93444 0.97949 0.95585 1.20011 0.93596 0.94456 1.04271 1.17956 0.83436 0.83367 0.81768 1.90788 1.29409 1.80564 1.40255 1.48268 1.30685 1.16693 1.35583 1.19294 0.91518 0.77809 0.98663 1.21465 1.14232 0.98342 1.21860 0.92244 1.24917 0.97457 0.95319 0.96396 1.69937 1.39516 1.02586 1.41345 0.86489 0.82216 0.77974 0.81042 1.19792 1.21034 1.20923 1.21366 0.86521 0.99372 0.91309 1.22224 0.97595 1.01749 1.00706 1.22092 1.00331 1.04723 0.94017 1.21044 1.01639 0.88899 0.97207 1.16740 0.85860 0.82798 1.10161 1.91501 1.76626 1.48487 1.94408 0.92251 0.88017 0.92312 0.84074 0.83934 0.94625 0.93801 0.92817 0.89686 0.91201 0.92019 0.92917 0.92424 0.93291 0.90169 0.83128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.31 -3.55 10.35 -19.02 -0.20 -3.75 16 3 C 0.10 1.32 6.70 -38.98 -0.26 1.06 16 4 C -0.19 -2.04 9.01 -39.51 -0.36 -2.39 16 5 C -0.06 -0.83 7.29 -39.21 -0.29 -1.11 16 6 C -0.12 -1.97 5.08 -104.96 -0.53 -2.50 16 7 C 0.55 11.54 7.25 -12.44 -0.09 11.45 16 8 O -0.53 -13.53 16.57 5.30 0.09 -13.44 16 9 N -0.58 -11.97 2.38 -168.66 -0.40 -12.37 16 10 C 0.25 6.19 4.45 -5.20 -0.02 6.17 16 11 C -0.52 -14.21 7.86 -34.44 -0.27 -14.48 16 12 H 0.06 1.63 7.50 -52.49 -0.39 1.24 16 13 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 14 N -0.89 -26.05 13.29 55.43 0.74 -25.32 16 15 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 16 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 19 C 0.12 1.88 2.42 -67.93 -0.16 1.71 16 20 C -0.16 -2.20 8.82 37.16 0.33 -1.88 16 21 C -0.15 -2.52 8.32 37.16 0.31 -2.21 16 22 C -0.07 -1.08 9.67 -39.15 -0.38 -1.46 16 23 C 0.06 0.94 7.30 -39.36 -0.29 0.65 16 24 F -0.13 -2.01 17.10 2.25 0.04 -1.97 16 25 H 0.06 0.31 7.64 -51.93 -0.40 -0.08 16 26 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16 28 H 0.14 1.03 6.28 -52.49 -0.33 0.71 16 29 H 0.14 1.62 5.27 -52.49 -0.28 1.34 16 30 H 0.04 0.90 6.73 -51.93 -0.35 0.55 16 31 H 0.04 1.27 7.39 -51.93 -0.38 0.88 16 32 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 33 H 0.09 1.18 4.31 -51.93 -0.22 0.96 16 34 H 0.07 1.07 6.94 -51.93 -0.36 0.71 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.05 0.65 7.03 -51.93 -0.37 0.28 16 37 H 0.06 1.02 7.93 -51.93 -0.41 0.61 16 38 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.08 1.53 6.92 -51.93 -0.36 1.17 16 40 H 0.15 2.42 8.06 -52.48 -0.42 2.00 16 LS Contribution 332.38 15.07 5.01 5.01 Total: -1.00 -32.79 332.38 -5.94 -38.73 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -5.07 Total: -1.26 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -1.12 Total: -2.22 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: 0.33 Total: -37.69 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -0.11 Total: -17.19 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.79 -5.94 -38.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060537755.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.355 kcal (2) G-P(sol) polarization free energy of solvation -32.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds