Wall clock time and date at job start Tue Mar 31 2020 08:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35769 * 116.99829 * 2 1 4 4 C 1.38922 * 119.91536 * 359.72715 * 3 2 1 5 5 C 1.37736 * 120.11412 * 180.27280 * 4 3 2 6 6 C 1.39726 * 119.95188 * 0.02562 * 5 4 3 7 7 C 1.47604 * 120.08034 * 179.97438 * 6 5 4 8 8 O 1.21578 * 119.99784 * 133.10324 * 7 6 5 9 9 N 1.34775 * 119.99757 * 313.09434 * 7 6 5 10 10 C 1.46499 * 119.99602 * 182.59800 * 9 7 6 11 11 C 1.50697 * 109.47224 * 90.00317 * 10 9 7 12 12 H 1.07998 * 119.99819 * 0.02562 * 11 10 9 13 13 C 1.37882 * 120.00252 * 179.97438 * 11 10 9 14 14 N 1.31512 * 119.99806 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99974 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47180 * 0.02562 * 15 13 11 17 17 H 1.48509 * 109.46962 * 119.99967 * 15 13 11 18 18 H 1.48500 * 109.47038 * 239.99741 * 15 13 11 19 19 C 1.46494 * 120.00234 * 2.60591 * 9 7 6 20 20 C 1.53004 * 109.47326 * 113.36434 * 19 9 7 21 21 C 1.53008 * 109.46667 * 233.36107 * 19 9 7 22 22 C 1.39735 * 119.83408 * 359.97438 * 6 5 4 23 23 C 1.37897 * 119.88870 * 359.97438 * 22 6 5 24 24 F 1.35099 * 119.98185 * 180.02562 * 23 22 6 25 25 H 1.09002 * 109.47166 * 59.99796 * 1 2 3 26 26 H 1.08996 * 109.47135 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47285 * 299.99988 * 1 2 3 28 28 H 1.08000 * 119.95046 * 0.25248 * 4 3 2 29 29 H 1.07998 * 120.02530 * 180.02562 * 5 4 3 30 30 H 1.09007 * 109.47297 * 210.00766 * 10 9 7 31 31 H 1.09000 * 109.47380 * 330.00419 * 10 9 7 32 32 H 0.96999 * 119.99738 * 179.97438 * 14 13 11 33 33 H 1.08998 * 109.47437 * 353.35811 * 19 9 7 34 34 H 1.09000 * 109.46939 * 59.99638 * 20 19 9 35 35 H 1.09000 * 109.47228 * 179.97438 * 20 19 9 36 36 H 1.08992 * 109.46951 * 299.99934 * 20 19 9 37 37 H 1.09000 * 109.46826 * 60.00496 * 21 19 9 38 38 H 1.09001 * 109.46493 * 179.97438 * 21 19 9 39 39 H 1.08995 * 109.47201 * 299.99545 * 21 19 9 40 40 H 1.08005 * 120.05717 * 180.02562 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 1.2870 2.3737 -0.0057 5 6 1.9080 3.6031 -0.0114 6 6 3.3032 3.6799 -0.0120 7 6 3.9716 4.9959 -0.0187 8 8 4.8885 5.2158 0.7489 9 7 3.5657 5.9535 -0.8757 10 6 4.2657 7.2396 -0.9220 11 6 5.3848 7.1665 -1.9287 12 1 5.5570 6.2535 -2.4792 13 6 6.1881 8.2656 -2.1476 14 7 5.9774 9.3778 -1.4782 15 14 7.5748 8.1751 -3.3959 16 1 7.6000 6.8237 -4.0107 17 1 7.3565 9.1952 -4.4529 18 1 8.8697 8.4350 -2.7170 19 6 2.4245 5.7084 -1.7609 20 6 1.2663 6.6270 -1.3662 21 6 2.8312 5.9937 -3.2081 22 6 4.0639 2.5078 -0.0062 23 6 3.4352 1.2805 0.0005 24 9 4.1689 0.1461 0.0067 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 0.2086 2.3146 -0.0061 29 1 1.3171 4.5070 -0.0155 30 1 3.5664 8.0237 -1.2123 31 1 4.6765 7.4653 0.0621 32 1 6.5427 10.1509 -1.6319 33 1 2.1108 4.6686 -1.6700 34 1 1.5801 7.6669 -1.4572 35 1 0.4173 6.4450 -2.0251 36 1 0.9767 6.4239 -0.3353 37 1 3.6562 5.3392 -3.4894 38 1 1.9821 5.8109 -3.8668 39 1 3.1448 7.0336 -3.2992 40 1 5.1426 2.5630 -0.0062 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060537755.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:35 Heat of formation + Delta-G solvation = -106.235612 kcal Electronic energy + Delta-G solvation = -24224.611763 eV Core-core repulsion = 20532.932724 eV Total energy + Delta-G solvation = -3691.679039 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.93344 -41.64716 -40.52376 -38.17148 -37.66246 -34.94567 -32.49820 -31.98276 -31.76172 -29.40494 -28.17744 -27.95299 -25.44028 -24.23312 -23.67189 -22.52766 -20.41354 -19.20791 -18.79840 -18.60876 -18.04387 -17.28307 -17.05427 -16.94491 -16.35008 -16.09155 -15.93189 -15.75583 -15.28689 -15.05744 -14.80391 -14.38928 -14.07956 -14.02177 -13.55969 -13.39681 -13.28552 -13.17126 -12.93752 -12.81690 -12.72710 -12.56198 -12.27101 -12.17863 -12.12788 -12.05889 -11.58255 -11.53593 -10.77577 -10.61607 -10.10175 -9.51724 -9.27459 -8.20252 -6.31755 -0.21262 -0.02705 1.35349 1.38065 1.48928 1.70089 2.07361 2.17519 2.40697 2.52368 3.09293 3.11010 3.46201 3.60343 3.86630 3.94790 4.03266 4.27764 4.32817 4.40379 4.43244 4.47552 4.61644 4.78092 4.80941 4.86450 4.88849 4.95539 5.03711 5.05769 5.11814 5.15024 5.25634 5.39582 5.47345 5.56253 5.64318 5.85771 6.09870 6.20223 6.69570 6.77418 7.25730 7.41844 8.87380 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.021168 B = 0.004321 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.420911 B = 6479.071896 C = 7059.488777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.325 6.325 3 C 0.121 3.879 4 C -0.166 4.166 5 C -0.051 4.051 6 C -0.143 4.143 7 C 0.542 3.458 8 O -0.594 6.594 9 N -0.583 5.583 10 C 0.264 3.736 11 C -0.528 4.528 12 H 0.052 0.948 13 C 0.010 3.990 14 N -0.927 5.927 15 Si 0.959 3.041 16 H -0.270 1.270 17 H -0.269 1.269 18 H -0.284 1.284 19 C 0.111 3.889 20 C -0.159 4.159 21 C -0.150 4.150 22 C -0.079 4.079 23 C 0.046 3.954 24 F -0.141 7.141 25 H 0.079 0.921 26 H 0.121 0.879 27 H 0.076 0.924 28 H 0.191 0.809 29 H 0.164 0.836 30 H 0.032 0.968 31 H -0.004 1.004 32 H 0.266 0.734 33 H 0.115 0.885 34 H 0.042 0.958 35 H 0.104 0.896 36 H 0.065 0.935 37 H 0.036 0.964 38 H 0.092 0.908 39 H 0.046 0.954 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.637 -15.915 -1.021 24.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.238 6.238 3 C 0.073 3.927 4 C -0.184 4.184 5 C -0.069 4.069 6 C -0.146 4.146 7 C 0.331 3.669 8 O -0.476 6.476 9 N -0.313 5.313 10 C 0.143 3.857 11 C -0.567 4.567 12 H 0.070 0.930 13 C -0.189 4.189 14 N -0.568 5.568 15 Si 0.785 3.215 16 H -0.194 1.194 17 H -0.194 1.194 18 H -0.210 1.210 19 C 0.009 3.991 20 C -0.217 4.217 21 C -0.208 4.208 22 C -0.099 4.099 23 C 0.026 3.974 24 F -0.120 7.120 25 H 0.098 0.902 26 H 0.139 0.861 27 H 0.095 0.905 28 H 0.208 0.792 29 H 0.181 0.819 30 H 0.050 0.950 31 H 0.014 0.986 32 H 0.075 0.925 33 H 0.133 0.867 34 H 0.061 0.939 35 H 0.122 0.878 36 H 0.084 0.916 37 H 0.055 0.945 38 H 0.111 0.889 39 H 0.065 0.935 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -18.028 -15.832 -0.641 24.002 hybrid contribution 1.637 0.432 -0.333 1.726 sum -16.391 -15.400 -0.974 22.512 Atomic orbital electron populations 1.23588 0.74923 1.06336 1.03487 1.86107 1.24781 1.25221 1.87740 1.19221 0.89890 0.86931 0.96651 1.21429 1.02326 0.89002 1.05610 1.21534 0.91454 0.99841 0.94110 1.19575 0.95263 0.91516 1.08268 1.18706 0.82758 0.84849 0.80582 1.90735 1.32329 1.81900 1.42667 1.48280 1.31652 1.15060 1.36302 1.18718 0.91312 0.80270 0.95372 1.21665 1.15018 0.98002 1.21974 0.93024 1.25747 0.99864 0.94998 0.98300 1.70046 1.40674 1.03260 1.42786 0.85486 0.78822 0.78344 0.78891 1.19399 1.19437 1.21005 1.21797 0.85534 1.01813 0.89958 1.22203 0.97597 0.99291 1.02618 1.22050 1.01380 1.01986 0.95369 1.20866 1.00930 0.89756 0.98381 1.16805 0.87112 0.81904 1.11558 1.91470 1.77144 1.48712 1.94625 0.90214 0.86122 0.90510 0.79160 0.81876 0.95006 0.98619 0.92548 0.86714 0.93909 0.87783 0.91582 0.94462 0.88910 0.93503 0.85185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.81 113.37 1.11 1.19 16 2 O -0.33 -6.21 10.35 -90.97 -0.94 -7.15 16 3 C 0.12 2.65 6.70 22.66 0.15 2.80 16 4 C -0.17 -2.73 9.01 22.31 0.20 -2.53 16 5 C -0.05 -1.13 7.29 22.51 0.16 -0.97 16 6 C -0.14 -4.68 5.08 -20.08 -0.10 -4.78 16 7 C 0.54 23.87 7.25 86.72 0.63 24.50 16 8 O -0.59 -32.53 16.57 -3.96 -0.07 -32.60 16 9 N -0.58 -24.79 2.38 -805.80 -1.92 -26.71 16 10 C 0.26 14.10 4.45 85.63 0.38 14.48 16 11 C -0.53 -30.16 7.86 25.60 0.20 -29.96 16 12 H 0.05 2.96 7.50 -2.91 -0.02 2.94 16 13 C 0.01 0.56 5.46 84.66 0.46 1.02 16 14 N -0.93 -55.92 13.29 21.45 0.28 -55.63 16 15 Si 0.96 45.37 29.54 68.60 2.03 47.39 16 16 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 17 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 18 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 19 C 0.11 3.35 2.42 45.00 0.11 3.46 16 20 C -0.16 -3.83 8.82 71.98 0.64 -3.20 16 21 C -0.15 -4.76 8.32 71.98 0.60 -4.16 16 22 C -0.08 -2.60 9.67 22.55 0.22 -2.38 16 23 C 0.05 1.32 7.30 22.41 0.16 1.48 16 24 F -0.14 -4.31 17.10 44.97 0.77 -3.54 16 25 H 0.08 0.34 7.64 -2.39 -0.02 0.32 16 26 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.08 0.36 7.66 -2.39 -0.02 0.34 16 28 H 0.19 1.32 6.28 -2.91 -0.02 1.30 16 29 H 0.16 2.96 5.27 -2.91 -0.02 2.95 16 30 H 0.03 1.71 6.73 -2.38 -0.02 1.69 16 31 H 0.00 -0.27 7.39 -2.39 -0.02 -0.29 16 32 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 33 H 0.12 2.81 4.31 -2.39 -0.01 2.80 16 34 H 0.04 1.27 6.94 -2.39 -0.02 1.26 16 35 H 0.10 1.65 8.14 -2.39 -0.02 1.64 16 36 H 0.07 1.42 7.03 -2.39 -0.02 1.40 16 37 H 0.04 1.30 7.93 -2.39 -0.02 1.28 16 38 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.05 1.79 6.92 -2.39 -0.02 1.77 16 40 H 0.13 4.62 8.06 -2.91 -0.02 4.59 16 Total: -1.00 -78.39 332.38 6.14 -72.25 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: 1.06 Total: 5.05 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: 4.92 Total: 0.95 kcal Atomic # 7 Polarization: -80.71 SS G_CDS: -1.64 Total: -82.34 kcal Atomic # 8 Polarization: -38.75 SS G_CDS: -1.01 Total: -39.75 kcal Atomic # 9 Polarization: -4.31 SS G_CDS: 0.77 Total: -3.54 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.39 kcal Total: -78.39 6.14 -72.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060537755.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.989 kcal (2) G-P(sol) polarization free energy of solvation -78.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds