Wall clock time and date at job start Tue Mar 31 2020 06:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.46686 * 2 1 4 4 C 1.50702 * 109.46955 * 179.97438 * 3 2 1 5 5 S 1.70619 * 124.52268 * 270.03001 * 4 3 2 6 6 C 1.75830 * 91.56409 * 179.97438 * 5 4 3 7 7 C 1.46585 * 125.45870 * 179.97438 * 6 5 4 8 8 O 1.21703 * 119.99674 * 171.43506 * 7 6 5 9 9 N 1.34771 * 120.00050 * 351.43601 * 7 6 5 10 10 C 1.46501 * 119.99935 * 0.11278 * 9 7 6 11 11 C 1.46502 * 119.99980 * 180.11787 * 9 7 6 12 12 C 1.50705 * 109.46923 * 90.00171 * 11 9 7 13 13 H 1.07996 * 119.99986 * 359.97438 * 12 11 9 14 14 C 1.37874 * 119.99461 * 180.02562 * 12 11 9 15 15 N 1.31517 * 120.00625 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 119.99922 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47054 * 59.99847 * 16 14 12 18 18 H 1.48499 * 109.47199 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.46739 * 299.99922 * 16 14 12 20 20 C 1.36648 * 109.08634 * 359.97438 * 6 5 4 21 21 C 1.33821 * 124.52444 * 90.02039 * 4 3 2 22 22 C 1.50698 * 122.44807 * 359.97438 * 21 4 3 23 23 C 1.52993 * 109.47297 * 84.99394 * 22 21 4 24 24 H 1.08998 * 109.47262 * 300.00026 * 1 2 3 25 25 H 1.09003 * 109.46920 * 60.00689 * 1 2 3 26 26 H 1.09000 * 109.46645 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47262 * 239.99974 * 2 1 3 28 28 H 1.08996 * 109.46607 * 119.99935 * 2 1 3 29 29 H 1.08998 * 109.47292 * 59.99992 * 3 2 1 30 30 H 1.08996 * 109.47545 * 299.99360 * 3 2 1 31 31 H 1.08999 * 109.47063 * 83.46271 * 10 9 7 32 32 H 1.08999 * 109.47583 * 203.45742 * 10 9 7 33 33 H 1.08992 * 109.47303 * 323.46350 * 10 9 7 34 34 H 1.09004 * 109.46826 * 209.99788 * 11 9 7 35 35 H 1.08994 * 109.46798 * 329.99826 * 11 9 7 36 36 H 0.96989 * 120.00561 * 179.97438 * 15 14 12 37 37 H 1.08000 * 123.35813 * 180.02562 * 20 6 5 38 38 H 1.08994 * 109.47072 * 205.00085 * 22 21 4 39 39 H 1.09008 * 109.46920 * 324.99547 * 22 21 4 40 40 H 1.09005 * 109.47350 * 180.02562 * 23 22 21 41 41 H 1.09004 * 109.47531 * 300.00218 * 23 22 21 42 42 H 1.08999 * 109.47561 * 60.00174 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 16 4.5133 1.4421 1.4068 6 6 5.9891 1.4417 0.4508 7 6 7.3519 1.4418 0.9906 8 8 8.3014 1.2845 0.2457 9 7 7.5534 1.6159 2.3117 10 6 6.4103 1.8027 3.2087 11 6 8.9157 1.6185 2.8508 12 6 9.4578 3.0246 2.8390 13 1 8.8488 3.8350 2.4668 14 6 10.7318 3.2760 3.3025 15 7 11.4736 2.2889 3.7553 16 14 11.4042 5.0188 3.2873 17 1 10.5399 5.8901 4.1232 18 1 12.7854 5.0212 3.8327 19 1 11.4221 5.5302 1.8932 20 6 5.6620 1.4414 -0.8759 21 6 4.3059 1.4428 -1.1016 22 6 3.7170 1.4425 -2.4887 23 6 3.4012 2.8793 -2.9091 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3632 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 5.9998 0.8304 3.4814 32 1 6.7359 2.3248 4.1084 33 1 5.6447 2.3916 2.7038 34 1 8.9022 1.2428 3.8740 35 1 9.5503 0.9791 2.2374 36 1 12.3699 2.4658 4.0810 37 1 6.3957 1.4407 -1.6684 38 1 4.4324 1.0085 -3.1871 39 1 2.8003 0.8526 -2.4942 40 1 2.9748 2.8790 -3.9123 41 1 2.6856 3.3133 -2.2107 42 1 4.3177 3.4693 -2.9037 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060617800.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:01 Heat of formation + Delta-G solvation = -26.201042 kcal Electronic energy + Delta-G solvation = -21438.994852 eV Core-core repulsion = 18316.999548 eV Total energy + Delta-G solvation = -3121.995304 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.27977 -38.41862 -35.05603 -34.81677 -32.79175 -32.48792 -30.09540 -28.22500 -26.76432 -25.77939 -24.10431 -23.67062 -21.80955 -21.55772 -19.27403 -18.10602 -17.49198 -16.53945 -16.03437 -15.44104 -14.91129 -14.87439 -14.64742 -14.17903 -14.00887 -13.85588 -13.60660 -13.05014 -12.89454 -12.61552 -12.53192 -12.38520 -12.17360 -11.86749 -11.82750 -11.60579 -11.41275 -11.27118 -11.24345 -11.06704 -10.91347 -10.85420 -10.60887 -10.22402 -10.03892 -9.68288 -9.13137 -8.44873 -8.42416 -8.16182 -7.67640 -6.05372 -4.10572 0.81451 1.73016 2.16728 2.60775 3.32171 3.36497 3.39746 3.78558 3.95886 4.44403 4.59057 4.74493 4.83121 4.89771 5.03427 5.13703 5.21587 5.29463 5.31942 5.34987 5.45904 5.50884 5.56812 5.63483 5.66285 5.74607 5.77060 5.79050 5.91278 5.95257 6.03679 6.08844 6.16514 6.17972 6.49633 6.64724 7.01820 7.39701 7.46941 7.90443 8.20284 8.30395 8.85918 9.01241 9.54480 11.02706 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.024813 B = 0.003656 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.186035 B = 7657.638024 C = 8125.224936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.047 4.047 4 C -0.235 4.235 5 S 0.215 5.785 6 C -0.246 4.246 7 C 0.574 3.426 8 O -0.529 6.529 9 N -0.595 5.595 10 C 0.070 3.930 11 C 0.247 3.753 12 C -0.529 4.529 13 H 0.058 0.942 14 C 0.062 3.938 15 N -0.895 5.895 16 Si 0.899 3.101 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.276 1.276 20 C -0.063 4.063 21 C -0.114 4.114 22 C -0.063 4.063 23 C -0.146 4.146 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.054 0.946 32 H 0.093 0.907 33 H 0.063 0.937 34 H 0.036 0.964 35 H 0.047 0.953 36 H 0.264 0.736 37 H 0.147 0.853 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.054 0.946 41 H 0.053 0.947 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.497 -2.828 -6.568 23.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.086 4.086 4 C -0.354 4.354 5 S 0.486 5.514 6 C -0.366 4.366 7 C 0.360 3.640 8 O -0.408 6.408 9 N -0.326 5.326 10 C -0.076 4.076 11 C 0.128 3.872 12 C -0.568 4.568 13 H 0.076 0.924 14 C -0.140 4.140 15 N -0.533 5.533 16 Si 0.727 3.273 17 H -0.202 1.202 18 H -0.211 1.211 19 H -0.201 1.201 20 C -0.096 4.096 21 C -0.127 4.127 22 C -0.103 4.103 23 C -0.204 4.204 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.073 0.927 32 H 0.111 0.889 33 H 0.081 0.919 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.165 0.835 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -22.111 -2.962 -5.280 22.925 hybrid contribution 0.719 1.041 -1.470 1.939 sum -21.392 -1.921 -6.751 22.514 Atomic orbital electron populations 1.21783 0.95602 1.01735 1.01812 1.21541 0.95554 0.95995 1.02685 1.20147 0.87949 0.97555 1.02916 1.24597 1.01088 1.09538 1.00139 1.83550 0.93667 1.68294 1.05899 1.24873 0.97259 1.16635 0.97833 1.16960 0.86094 0.78236 0.82673 1.90799 1.41924 1.50508 1.57587 1.48049 1.09508 1.69345 1.05706 1.21854 0.88782 1.00908 0.96073 1.19364 0.75515 0.97974 0.94330 1.21396 0.99839 0.93414 1.42165 0.92413 1.24929 0.96498 0.97500 0.95071 1.69917 1.10040 1.31278 1.42103 0.86541 0.77934 0.84371 0.78497 1.20199 1.21128 1.20128 1.20525 0.95376 0.98321 0.95339 1.18529 0.92390 1.05935 0.95822 1.20222 1.00400 0.97517 0.92121 1.21744 1.01840 0.96257 1.00542 0.92672 0.92723 0.92623 0.91653 0.91726 0.91099 0.90344 0.92731 0.88867 0.91917 0.94628 0.93518 0.92590 0.83530 0.91161 0.91304 0.92679 0.92751 0.92405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.16 0.37 -0.63 16 2 C -0.12 -0.98 5.92 -26.73 -0.16 -1.13 16 3 C -0.05 -0.42 5.04 -27.88 -0.14 -0.56 16 4 C -0.24 -2.83 5.53 -35.86 -0.20 -3.03 16 5 S 0.22 2.86 17.84 -107.50 -1.92 0.94 16 6 C -0.25 -4.38 6.23 -36.79 -0.23 -4.60 16 7 C 0.57 12.99 7.64 -12.90 -0.10 12.89 16 8 O -0.53 -14.13 16.43 5.19 0.09 -14.05 16 9 N -0.59 -13.21 2.86 -184.55 -0.53 -13.74 16 10 C 0.07 1.16 8.92 59.85 0.53 1.70 16 11 C 0.25 6.56 5.13 -5.19 -0.03 6.53 16 12 C -0.53 -15.20 9.39 -34.44 -0.32 -15.53 16 13 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 14 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 15 N -0.89 -26.67 13.29 55.43 0.74 -25.94 16 16 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 C -0.06 -1.01 9.79 -40.43 -0.40 -1.41 16 21 C -0.11 -1.48 5.04 -106.45 -0.54 -2.02 16 22 C -0.06 -0.65 5.54 -27.89 -0.15 -0.80 16 23 C -0.15 -1.37 9.83 37.15 0.37 -1.00 16 24 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.56 7.74 -51.93 -0.40 0.16 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.65 6.40 -51.93 -0.33 0.32 16 31 H 0.05 0.77 7.77 -51.93 -0.40 0.37 16 32 H 0.09 1.52 8.02 -51.93 -0.42 1.10 16 33 H 0.06 0.95 4.61 -23.22 -0.11 0.84 16 34 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 35 H 0.05 1.39 7.42 -51.93 -0.39 1.01 16 36 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 37 H 0.15 2.38 8.06 -52.49 -0.42 1.96 16 38 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 39 H 0.07 0.61 7.06 -51.92 -0.37 0.25 16 40 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.05 0.49 7.24 -51.93 -0.38 0.12 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 354.24 15.07 5.34 5.34 Total: -1.00 -32.89 354.24 -8.95 -41.85 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: -6.56 Total: -3.50 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: -1.09 Total: -7.89 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: 0.21 Total: -39.68 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: 0.09 Total: -14.05 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Atomic # 16 Polarization: 2.86 SS G_CDS: -1.92 Total: 0.94 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.89 -8.95 -41.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060617800.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.646 kcal (2) G-P(sol) polarization free energy of solvation -32.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds