Wall clock time and date at job start Tue Mar 31 2020 06:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.46686 * 2 1 4 4 C 1.50702 * 109.46955 * 179.97438 * 3 2 1 5 5 S 1.70619 * 124.52268 * 270.03001 * 4 3 2 6 6 C 1.75830 * 91.56409 * 179.97438 * 5 4 3 7 7 C 1.46585 * 125.45870 * 179.97438 * 6 5 4 8 8 O 1.21703 * 119.99674 * 171.43506 * 7 6 5 9 9 N 1.34771 * 120.00050 * 351.43601 * 7 6 5 10 10 C 1.46501 * 119.99935 * 0.11278 * 9 7 6 11 11 C 1.46502 * 119.99980 * 180.11787 * 9 7 6 12 12 C 1.50705 * 109.46923 * 90.00171 * 11 9 7 13 13 H 1.07996 * 119.99986 * 359.97438 * 12 11 9 14 14 C 1.37874 * 119.99461 * 180.02562 * 12 11 9 15 15 N 1.31517 * 120.00625 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 119.99922 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47054 * 59.99847 * 16 14 12 18 18 H 1.48499 * 109.47199 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.46739 * 299.99922 * 16 14 12 20 20 C 1.36648 * 109.08634 * 359.97438 * 6 5 4 21 21 C 1.33821 * 124.52444 * 90.02039 * 4 3 2 22 22 C 1.50698 * 122.44807 * 359.97438 * 21 4 3 23 23 C 1.52993 * 109.47297 * 84.99394 * 22 21 4 24 24 H 1.08998 * 109.47262 * 300.00026 * 1 2 3 25 25 H 1.09003 * 109.46920 * 60.00689 * 1 2 3 26 26 H 1.09000 * 109.46645 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47262 * 239.99974 * 2 1 3 28 28 H 1.08996 * 109.46607 * 119.99935 * 2 1 3 29 29 H 1.08998 * 109.47292 * 59.99992 * 3 2 1 30 30 H 1.08996 * 109.47545 * 299.99360 * 3 2 1 31 31 H 1.08999 * 109.47063 * 83.46271 * 10 9 7 32 32 H 1.08999 * 109.47583 * 203.45742 * 10 9 7 33 33 H 1.08992 * 109.47303 * 323.46350 * 10 9 7 34 34 H 1.09004 * 109.46826 * 209.99788 * 11 9 7 35 35 H 1.08994 * 109.46798 * 329.99826 * 11 9 7 36 36 H 0.96989 * 120.00561 * 179.97438 * 15 14 12 37 37 H 1.08000 * 123.35813 * 180.02562 * 20 6 5 38 38 H 1.08994 * 109.47072 * 205.00085 * 22 21 4 39 39 H 1.09008 * 109.46920 * 324.99547 * 22 21 4 40 40 H 1.09005 * 109.47350 * 180.02562 * 23 22 21 41 41 H 1.09004 * 109.47531 * 300.00218 * 23 22 21 42 42 H 1.08999 * 109.47561 * 60.00174 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 16 4.5133 1.4421 1.4068 6 6 5.9891 1.4417 0.4508 7 6 7.3519 1.4418 0.9906 8 8 8.3014 1.2845 0.2457 9 7 7.5534 1.6159 2.3117 10 6 6.4103 1.8027 3.2087 11 6 8.9157 1.6185 2.8508 12 6 9.4578 3.0246 2.8390 13 1 8.8488 3.8350 2.4668 14 6 10.7318 3.2760 3.3025 15 7 11.4736 2.2889 3.7553 16 14 11.4042 5.0188 3.2873 17 1 10.5399 5.8901 4.1232 18 1 12.7854 5.0212 3.8327 19 1 11.4221 5.5302 1.8932 20 6 5.6620 1.4414 -0.8759 21 6 4.3059 1.4428 -1.1016 22 6 3.7170 1.4425 -2.4887 23 6 3.4012 2.8793 -2.9091 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3632 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 5.9998 0.8304 3.4814 32 1 6.7359 2.3248 4.1084 33 1 5.6447 2.3916 2.7038 34 1 8.9022 1.2428 3.8740 35 1 9.5503 0.9791 2.2374 36 1 12.3699 2.4658 4.0810 37 1 6.3957 1.4407 -1.6684 38 1 4.4324 1.0085 -3.1871 39 1 2.8003 0.8526 -2.4942 40 1 2.9748 2.8790 -3.9123 41 1 2.6856 3.3133 -2.2107 42 1 4.3177 3.4693 -2.9037 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060617800.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:01 Heat of formation + Delta-G solvation = -45.168685 kcal Electronic energy + Delta-G solvation = -21439.817351 eV Core-core repulsion = 18316.999548 eV Total energy + Delta-G solvation = -3122.817802 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.82498 -39.66683 -36.73987 -35.76274 -34.80662 -33.54625 -31.15661 -29.94293 -28.04416 -27.30423 -25.34813 -24.93998 -23.27061 -22.27415 -20.64717 -19.30598 -18.91366 -18.72068 -17.38155 -16.97266 -16.46179 -16.38595 -15.73911 -15.48579 -14.98507 -14.80310 -14.54128 -14.36574 -14.27609 -14.12406 -13.95475 -13.55500 -13.46648 -13.19926 -13.01011 -12.77060 -12.70847 -12.59385 -12.36166 -12.33416 -12.20958 -12.00063 -11.80609 -11.77461 -11.55849 -11.15541 -10.90832 -10.66906 -9.81064 -9.37409 -9.21192 -8.25581 -6.41072 -0.42609 0.53297 1.04250 1.35085 1.39827 1.40988 1.47700 2.12150 2.31235 2.39566 3.03947 3.62198 3.76617 4.05407 4.09654 4.14624 4.20232 4.28423 4.41039 4.44556 4.55350 4.64927 4.71981 4.75396 4.77049 4.84806 4.91031 5.00568 5.02516 5.05296 5.13117 5.19497 5.26330 5.31116 5.38917 5.46392 5.47924 5.52007 5.61966 5.74350 6.00251 6.55148 6.66739 7.17716 7.33252 8.81676 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.024813 B = 0.003656 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.186035 B = 7657.638024 C = 8125.224936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C -0.048 4.048 4 C -0.212 4.212 5 S 0.268 5.732 6 C -0.300 4.300 7 C 0.566 3.434 8 O -0.592 6.592 9 N -0.603 5.603 10 C 0.065 3.935 11 C 0.261 3.739 12 C -0.549 4.549 13 H 0.052 0.948 14 C 0.010 3.990 15 N -0.926 5.926 16 Si 0.969 3.031 17 H -0.258 1.258 18 H -0.275 1.275 19 H -0.280 1.280 20 C -0.057 4.057 21 C -0.127 4.127 22 C -0.061 4.061 23 C -0.144 4.144 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.034 0.966 35 H 0.000 1.000 36 H 0.269 0.731 37 H 0.131 0.869 38 H 0.068 0.932 39 H 0.089 0.911 40 H 0.074 0.926 41 H 0.060 0.940 42 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.075 -1.739 -6.489 26.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.087 4.087 4 C -0.331 4.331 5 S 0.540 5.460 6 C -0.420 4.420 7 C 0.356 3.644 8 O -0.475 6.475 9 N -0.333 5.333 10 C -0.079 4.079 11 C 0.140 3.860 12 C -0.587 4.587 13 H 0.070 0.930 14 C -0.189 4.189 15 N -0.566 5.566 16 Si 0.793 3.207 17 H -0.182 1.182 18 H -0.200 1.200 19 H -0.205 1.205 20 C -0.091 4.091 21 C -0.138 4.138 22 C -0.100 4.100 23 C -0.202 4.202 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.104 0.896 30 H 0.113 0.887 31 H 0.102 0.898 32 H 0.115 0.885 33 H 0.100 0.900 34 H 0.052 0.948 35 H 0.019 0.981 36 H 0.078 0.922 37 H 0.149 0.851 38 H 0.087 0.913 39 H 0.108 0.892 40 H 0.093 0.907 41 H 0.079 0.921 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -25.740 -1.872 -5.161 26.319 hybrid contribution 1.696 0.633 -1.533 2.373 sum -24.044 -1.239 -6.694 24.989 Atomic orbital electron populations 1.21758 0.94105 1.02272 1.02508 1.21531 0.96814 0.94973 1.02341 1.20347 0.85163 0.98672 1.04515 1.25081 1.02815 1.06101 0.99118 1.83079 0.90538 1.67171 1.05221 1.24431 0.96807 1.21290 0.99422 1.17625 0.87693 0.76847 0.82260 1.90734 1.44519 1.53330 1.58944 1.48021 1.09347 1.69264 1.06621 1.22150 0.87414 1.03040 0.95345 1.18863 0.77591 0.96325 0.93184 1.21645 1.00549 0.94015 1.42525 0.93010 1.25856 0.96632 1.02061 0.94352 1.70032 1.10463 1.33542 1.42524 0.85453 0.77817 0.79044 0.78420 1.18229 1.20019 1.20524 1.20682 0.96863 0.97095 0.94496 1.18675 0.90893 1.06440 0.97821 1.20287 1.01030 0.98508 0.90204 1.21735 1.01257 0.95246 1.01921 0.92118 0.91915 0.92252 0.91971 0.92261 0.89587 0.88704 0.89825 0.88549 0.89979 0.94804 0.98145 0.92201 0.85091 0.91345 0.89214 0.90721 0.92078 0.94182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.91 71.98 0.71 -0.66 16 2 C -0.12 -1.49 5.92 30.60 0.18 -1.31 16 3 C -0.05 -0.67 5.04 29.85 0.15 -0.52 16 4 C -0.21 -4.49 5.53 24.68 0.14 -4.35 16 5 S 0.27 6.58 17.84 -56.49 -1.01 5.57 16 6 C -0.30 -10.89 6.23 24.08 0.15 -10.74 16 7 C 0.57 27.08 7.64 86.42 0.66 27.74 16 8 O -0.59 -34.18 16.43 -4.36 -0.07 -34.25 16 9 N -0.60 -27.86 2.86 -856.00 -2.45 -30.30 16 10 C 0.06 2.11 8.92 127.77 1.14 3.25 16 11 C 0.26 14.65 5.13 85.63 0.44 15.09 16 12 C -0.55 -32.64 9.39 25.60 0.24 -32.40 16 13 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 14 C 0.01 0.61 5.46 84.65 0.46 1.07 16 15 N -0.93 -56.70 13.29 21.45 0.28 -56.41 16 16 Si 0.97 45.60 29.54 68.60 2.03 47.62 16 17 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 18 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 19 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 20 C -0.06 -1.86 9.79 21.72 0.21 -1.65 16 21 C -0.13 -3.09 5.04 -21.05 -0.11 -3.20 16 22 C -0.06 -1.10 5.54 29.85 0.17 -0.94 16 23 C -0.14 -2.33 9.83 71.98 0.71 -1.62 16 24 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 25 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.06 0.84 7.74 -2.39 -0.02 0.82 16 28 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.09 1.11 6.40 -2.39 -0.02 1.09 16 31 H 0.08 2.24 7.77 -2.39 -0.02 2.22 16 32 H 0.10 3.08 8.02 -2.39 -0.02 3.06 16 33 H 0.08 2.35 4.61 -20.65 -0.10 2.26 16 34 H 0.03 1.87 8.07 -2.38 -0.02 1.85 16 35 H 0.00 0.03 7.42 -2.39 -0.02 0.01 16 36 H 0.27 15.40 8.31 -92.72 -0.77 14.63 16 37 H 0.13 4.57 8.06 -2.91 -0.02 4.54 16 38 H 0.07 1.27 8.10 -2.39 -0.02 1.25 16 39 H 0.09 1.26 7.06 -2.38 -0.02 1.25 16 40 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 41 H 0.06 0.90 7.24 -2.38 -0.02 0.88 16 42 H 0.04 0.78 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -75.96 354.24 4.95 -71.01 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: 0.91 Total: 6.97 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: 5.25 Total: -10.22 kcal Atomic # 7 Polarization: -84.56 SS G_CDS: -2.16 Total: -86.72 kcal Atomic # 8 Polarization: -34.18 SS G_CDS: -0.07 Total: -34.25 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.62 kcal Atomic # 16 Polarization: 6.58 SS G_CDS: -1.01 Total: 5.57 kcal Total: -75.96 4.95 -71.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060617800.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.846 kcal (2) G-P(sol) polarization free energy of solvation -75.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds