Wall clock time and date at job start Tue Mar 31 2020 06:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47289 * 2 1 4 4 C 1.50698 * 109.47546 * 180.02562 * 3 2 1 5 5 S 1.70619 * 124.52011 * 270.24019 * 4 3 2 6 6 C 1.75830 * 91.56165 * 180.09066 * 5 4 3 7 7 C 1.46586 * 125.45610 * 179.97438 * 6 5 4 8 8 O 1.21705 * 119.99879 * 179.69743 * 7 6 5 9 9 N 1.34773 * 119.99926 * 359.41435 * 7 6 5 10 10 C 1.46506 * 119.99969 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.46961 * 325.00439 * 10 9 7 12 12 C 1.53006 * 109.47007 * 85.00250 * 10 9 7 13 13 C 1.50696 * 109.47274 * 205.00301 * 10 9 7 14 14 H 1.08001 * 120.00338 * 359.97438 * 13 10 9 15 15 C 1.37874 * 120.00035 * 180.02562 * 13 10 9 16 16 N 1.31515 * 119.99974 * 180.02562 * 15 13 10 17 17 Si 1.86797 * 120.00017 * 0.02562 * 15 13 10 18 18 H 1.48498 * 109.47388 * 89.99883 * 17 15 13 19 19 H 1.48500 * 109.47363 * 210.00119 * 17 15 13 20 20 H 1.48497 * 109.47140 * 329.99500 * 17 15 13 21 21 C 1.36640 * 109.08555 * 359.69870 * 6 5 4 22 22 C 1.33814 * 124.52593 * 89.99464 * 4 3 2 23 23 C 1.50695 * 122.44803 * 359.96107 * 22 4 3 24 24 C 1.52995 * 109.47538 * 84.99470 * 23 22 4 25 25 H 1.08994 * 109.47253 * 60.00456 * 1 2 3 26 26 H 1.08999 * 109.46907 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47284 * 300.00075 * 1 2 3 28 28 H 1.09000 * 109.47284 * 239.99925 * 2 1 3 29 29 H 1.09005 * 109.47574 * 119.99922 * 2 1 3 30 30 H 1.09000 * 109.47019 * 59.99762 * 3 2 1 31 31 H 1.08999 * 109.47037 * 300.00102 * 3 2 1 32 32 H 0.96998 * 120.00530 * 0.02562 * 9 7 6 33 33 H 1.08995 * 109.46964 * 300.00317 * 12 10 9 34 34 H 1.09003 * 109.46853 * 59.99828 * 12 10 9 35 35 H 1.08992 * 109.47145 * 180.02562 * 12 10 9 36 36 H 0.97002 * 119.99867 * 180.02562 * 16 15 13 37 37 H 1.08004 * 123.35646 * 180.25034 * 21 6 5 38 38 H 1.09005 * 109.47203 * 204.99882 * 23 22 4 39 39 H 1.09011 * 109.47143 * 324.99353 * 23 22 4 40 40 H 1.09005 * 109.47210 * 300.00408 * 24 23 22 41 41 H 1.09003 * 109.47305 * 59.99900 * 24 23 22 42 42 H 1.09000 * 109.47888 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 -0.0006 5 16 4.5145 1.4365 1.4047 6 6 5.9894 1.4435 0.4476 7 6 7.3527 1.4430 0.9863 8 8 8.3059 1.4427 0.2296 9 7 7.5504 1.4488 2.3194 10 6 8.9130 1.4478 2.8578 11 1 9.5587 0.8537 2.2111 12 6 9.4372 2.8838 2.9216 13 6 8.9054 0.8538 4.2427 14 1 7.9784 0.5117 4.6786 15 6 10.0818 0.7481 4.9539 16 7 10.0753 0.2293 6.1624 17 14 11.6849 1.3418 4.2011 18 1 11.8947 2.7708 4.5463 19 1 12.8112 0.5335 4.7335 20 1 11.6235 1.1930 2.7248 21 6 5.6612 1.4432 -0.8789 22 6 4.3049 1.4427 -1.1034 23 6 3.7149 1.4418 -2.4900 24 6 3.3985 2.8784 -2.9106 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 6.7907 1.4529 2.9224 33 1 9.4426 3.3134 1.9199 34 1 8.7914 3.4779 3.5682 35 1 10.4510 2.8830 3.3217 36 1 10.9029 0.1552 6.6629 37 1 6.3943 1.4430 -1.6720 38 1 4.4300 1.0077 -3.1889 39 1 2.7984 0.8517 -2.4946 40 1 2.6835 3.3125 -2.2117 41 1 4.3150 3.4686 -2.9061 42 1 2.9713 2.8779 -3.9134 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064318557.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:50 Heat of formation + Delta-G solvation = -32.845374 kcal Electronic energy + Delta-G solvation = -21214.521788 eV Core-core repulsion = 18092.238364 eV Total energy + Delta-G solvation = -3122.283423 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.43596 -38.52016 -35.22872 -34.86141 -32.78786 -32.38269 -30.47510 -29.65140 -26.77006 -25.19667 -24.24192 -23.43196 -21.67062 -20.93673 -19.78819 -18.72694 -17.88610 -16.76174 -16.09057 -15.43893 -15.02883 -14.97266 -14.50632 -14.30602 -14.07583 -13.80354 -13.71449 -13.17510 -12.98272 -12.91891 -12.67278 -12.21371 -12.18108 -12.02673 -11.84465 -11.69105 -11.49643 -11.40997 -11.20508 -11.12986 -10.95733 -10.81238 -10.58602 -10.19377 -9.75156 -9.33558 -9.24776 -8.77354 -8.58567 -8.38903 -8.14823 -6.21246 -4.24111 0.64936 1.55895 1.98730 2.44975 3.23632 3.35632 3.40387 3.69467 3.87766 4.31615 4.48606 4.69551 4.77693 4.82720 4.93997 5.12179 5.13478 5.21913 5.25211 5.35738 5.44344 5.52058 5.52381 5.55466 5.70854 5.71854 5.81674 5.89354 5.98747 6.04099 6.09063 6.29757 6.34559 6.39197 6.48785 6.54623 6.84545 7.16484 7.23904 7.48997 8.11053 8.47648 8.73382 8.84639 9.38988 10.90849 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.024846 B = 0.003596 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.683352 B = 7784.947403 C = 8614.880022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.049 4.049 4 C -0.204 4.204 5 S 0.200 5.800 6 C -0.247 4.247 7 C 0.576 3.424 8 O -0.545 6.545 9 N -0.695 5.695 10 C 0.237 3.763 11 H 0.051 0.949 12 C -0.162 4.162 13 C -0.536 4.536 14 H 0.081 0.919 15 C 0.079 3.921 16 N -0.891 5.891 17 Si 0.885 3.115 18 H -0.276 1.276 19 H -0.294 1.294 20 H -0.261 1.261 21 C -0.061 4.061 22 C -0.115 4.115 23 C -0.062 4.062 24 C -0.147 4.147 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.392 0.608 33 H 0.037 0.963 34 H 0.054 0.946 35 H 0.049 0.951 36 H 0.268 0.732 37 H 0.149 0.851 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.054 0.946 41 H 0.057 0.943 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.782 3.143 -14.206 23.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.088 4.088 4 C -0.323 4.323 5 S 0.470 5.530 6 C -0.368 4.368 7 C 0.361 3.639 8 O -0.425 6.425 9 N -0.343 5.343 10 C 0.134 3.866 11 H 0.069 0.931 12 C -0.220 4.220 13 C -0.574 4.574 14 H 0.099 0.901 15 C -0.124 4.124 16 N -0.528 5.528 17 Si 0.715 3.285 18 H -0.202 1.202 19 H -0.221 1.221 20 H -0.186 1.186 21 C -0.094 4.094 22 C -0.128 4.128 23 C -0.102 4.102 24 C -0.204 4.204 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.226 0.774 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.167 0.833 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.259 3.078 -12.929 22.584 hybrid contribution 0.899 0.328 -1.393 1.690 sum -17.360 3.407 -14.321 22.761 Atomic orbital electron populations 1.21775 0.95452 1.01865 1.01844 1.21561 0.95734 0.95767 1.02855 1.20208 0.87413 0.97898 1.03271 1.23976 1.00769 1.10068 0.97537 1.83102 0.94348 1.68193 1.07339 1.24811 0.97388 1.16727 0.97885 1.17028 0.86244 0.77422 0.83197 1.90775 1.41737 1.51716 1.58264 1.46123 1.11056 1.72180 1.04903 1.19156 0.78894 0.93137 0.95389 0.93115 1.22458 1.00437 0.99591 0.99526 1.21023 0.96678 1.41934 0.97790 0.90147 1.24817 0.98855 0.94264 0.94512 1.69867 1.28068 1.44060 1.10816 0.86877 0.82956 0.78228 0.80462 1.20238 1.22098 1.18603 1.20550 0.95372 0.98152 0.95298 1.18577 0.92419 1.05814 0.95974 1.20227 1.00553 0.97661 0.91754 1.21750 1.01852 0.96130 1.00697 0.92694 0.92519 0.92616 0.91552 0.91568 0.90803 0.89923 0.77394 0.94424 0.92720 0.93291 0.92248 0.83329 0.90993 0.91085 0.92675 0.92417 0.92538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.91 37.16 0.37 -0.59 16 2 C -0.12 -0.95 5.92 -26.73 -0.16 -1.11 16 3 C -0.05 -0.41 5.04 -27.88 -0.14 -0.55 16 4 C -0.20 -2.29 5.53 -35.86 -0.20 -2.49 16 5 S 0.20 2.61 22.10 -107.50 -2.38 0.23 16 6 C -0.25 -4.07 6.45 -36.79 -0.24 -4.31 16 7 C 0.58 11.88 7.75 -12.90 -0.10 11.78 16 8 O -0.54 -12.93 16.51 5.18 0.09 -12.85 16 9 N -0.70 -14.74 5.07 -56.27 -0.29 -15.03 16 10 C 0.24 5.83 2.15 -69.08 -0.15 5.68 16 11 H 0.05 1.36 6.64 -51.93 -0.34 1.02 16 12 C -0.16 -3.71 8.96 37.16 0.33 -3.38 16 13 C -0.54 -14.73 9.31 -34.44 -0.32 -15.05 16 14 H 0.08 2.32 7.98 -52.49 -0.42 1.90 16 15 C 0.08 2.24 5.45 -17.82 -0.10 2.15 16 16 N -0.89 -26.51 13.96 55.43 0.77 -25.73 16 17 Si 0.89 21.92 24.37 -169.99 -4.14 17.78 16 18 H -0.28 -6.59 6.87 56.52 0.39 -6.20 16 19 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 20 H -0.26 -6.44 6.53 56.52 0.37 -6.07 16 21 C -0.06 -0.88 9.78 -40.44 -0.40 -1.28 16 22 C -0.11 -1.35 5.04 -106.46 -0.54 -1.89 16 23 C -0.06 -0.56 5.54 -27.89 -0.15 -0.72 16 24 C -0.15 -1.18 9.83 37.16 0.37 -0.82 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.53 7.74 -51.93 -0.40 0.13 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.61 6.39 -51.93 -0.33 0.28 16 32 H 0.39 7.51 7.65 -40.82 -0.31 7.19 16 33 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.05 1.14 3.27 -51.93 -0.17 0.97 16 36 H 0.27 7.46 8.31 -40.82 -0.34 7.13 16 37 H 0.15 2.13 8.06 -52.48 -0.42 1.71 16 38 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 39 H 0.07 0.56 7.06 -51.92 -0.37 0.19 16 40 H 0.05 0.43 7.24 -51.93 -0.38 0.06 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 350.87 15.07 5.29 5.29 Total: -1.00 -31.36 350.87 -8.63 -39.98 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -6.55 Total: 2.90 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: -1.42 Total: -12.57 kcal Atomic # 7 Polarization: -41.25 SS G_CDS: 0.49 Total: -40.76 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: 0.09 Total: -12.85 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.14 Total: 17.78 kcal Atomic # 16 Polarization: 2.61 SS G_CDS: -2.38 Total: 0.23 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.36 -8.63 -39.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064318557.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.138 kcal (2) G-P(sol) polarization free energy of solvation -31.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds