Wall clock time and date at job start Tue Mar 31 2020 06:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47289 * 2 1 4 4 C 1.50698 * 109.47546 * 180.02562 * 3 2 1 5 5 S 1.70619 * 124.52011 * 270.24019 * 4 3 2 6 6 C 1.75830 * 91.56165 * 180.09066 * 5 4 3 7 7 C 1.46586 * 125.45610 * 179.97438 * 6 5 4 8 8 O 1.21705 * 119.99879 * 179.69743 * 7 6 5 9 9 N 1.34773 * 119.99926 * 359.41435 * 7 6 5 10 10 C 1.46506 * 119.99969 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.46961 * 325.00439 * 10 9 7 12 12 C 1.53006 * 109.47007 * 85.00250 * 10 9 7 13 13 C 1.50696 * 109.47274 * 205.00301 * 10 9 7 14 14 H 1.08001 * 120.00338 * 359.97438 * 13 10 9 15 15 C 1.37874 * 120.00035 * 180.02562 * 13 10 9 16 16 N 1.31515 * 119.99974 * 180.02562 * 15 13 10 17 17 Si 1.86797 * 120.00017 * 0.02562 * 15 13 10 18 18 H 1.48498 * 109.47388 * 89.99883 * 17 15 13 19 19 H 1.48500 * 109.47363 * 210.00119 * 17 15 13 20 20 H 1.48497 * 109.47140 * 329.99500 * 17 15 13 21 21 C 1.36640 * 109.08555 * 359.69870 * 6 5 4 22 22 C 1.33814 * 124.52593 * 89.99464 * 4 3 2 23 23 C 1.50695 * 122.44803 * 359.96107 * 22 4 3 24 24 C 1.52995 * 109.47538 * 84.99470 * 23 22 4 25 25 H 1.08994 * 109.47253 * 60.00456 * 1 2 3 26 26 H 1.08999 * 109.46907 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47284 * 300.00075 * 1 2 3 28 28 H 1.09000 * 109.47284 * 239.99925 * 2 1 3 29 29 H 1.09005 * 109.47574 * 119.99922 * 2 1 3 30 30 H 1.09000 * 109.47019 * 59.99762 * 3 2 1 31 31 H 1.08999 * 109.47037 * 300.00102 * 3 2 1 32 32 H 0.96998 * 120.00530 * 0.02562 * 9 7 6 33 33 H 1.08995 * 109.46964 * 300.00317 * 12 10 9 34 34 H 1.09003 * 109.46853 * 59.99828 * 12 10 9 35 35 H 1.08992 * 109.47145 * 180.02562 * 12 10 9 36 36 H 0.97002 * 119.99867 * 180.02562 * 16 15 13 37 37 H 1.08004 * 123.35646 * 180.25034 * 21 6 5 38 38 H 1.09005 * 109.47203 * 204.99882 * 23 22 4 39 39 H 1.09011 * 109.47143 * 324.99353 * 23 22 4 40 40 H 1.09005 * 109.47210 * 300.00408 * 24 23 22 41 41 H 1.09003 * 109.47305 * 59.99900 * 24 23 22 42 42 H 1.09000 * 109.47888 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 -0.0006 5 16 4.5145 1.4365 1.4047 6 6 5.9894 1.4435 0.4476 7 6 7.3527 1.4430 0.9863 8 8 8.3059 1.4427 0.2296 9 7 7.5504 1.4488 2.3194 10 6 8.9130 1.4478 2.8578 11 1 9.5587 0.8537 2.2111 12 6 9.4372 2.8838 2.9216 13 6 8.9054 0.8538 4.2427 14 1 7.9784 0.5117 4.6786 15 6 10.0818 0.7481 4.9539 16 7 10.0753 0.2293 6.1624 17 14 11.6849 1.3418 4.2011 18 1 11.8947 2.7708 4.5463 19 1 12.8112 0.5335 4.7335 20 1 11.6235 1.1930 2.7248 21 6 5.6612 1.4432 -0.8789 22 6 4.3049 1.4427 -1.1034 23 6 3.7149 1.4418 -2.4900 24 6 3.3985 2.8784 -2.9106 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 6.7907 1.4529 2.9224 33 1 9.4426 3.3134 1.9199 34 1 8.7914 3.4779 3.5682 35 1 10.4510 2.8830 3.3217 36 1 10.9029 0.1552 6.6629 37 1 6.3943 1.4430 -1.6720 38 1 4.4300 1.0077 -3.1889 39 1 2.7984 0.8517 -2.4946 40 1 2.6835 3.3125 -2.2117 41 1 4.3150 3.4686 -2.9061 42 1 2.9713 2.8779 -3.9134 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064318557.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:49 Heat of formation + Delta-G solvation = -51.800243 kcal Electronic energy + Delta-G solvation = -21215.343733 eV Core-core repulsion = 18092.238364 eV Total energy + Delta-G solvation = -3123.105368 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.87351 -39.71664 -36.93531 -35.77500 -34.48110 -33.60058 -32.04419 -30.73455 -27.77581 -27.24973 -25.02754 -24.66720 -22.52373 -22.31014 -21.43594 -19.91592 -19.21554 -18.37678 -17.69408 -17.00247 -16.48816 -16.06396 -15.79365 -15.48780 -15.08662 -14.95622 -14.79238 -14.64556 -14.37355 -14.16256 -13.82098 -13.72725 -13.52002 -13.23255 -12.85523 -12.82976 -12.73096 -12.39527 -12.36921 -12.18511 -12.01896 -11.80213 -11.71565 -11.65022 -11.38064 -11.33213 -11.06573 -10.90062 -10.09410 -9.61919 -9.34654 -8.40971 -6.47970 -0.49644 0.46627 0.93625 1.25936 1.34197 1.35307 1.44047 2.18407 2.24016 2.28726 2.94738 3.68692 3.80701 4.05656 4.08460 4.17093 4.26585 4.37800 4.39691 4.50079 4.55949 4.62632 4.63324 4.71740 4.75548 4.84235 4.91201 4.97361 4.99598 5.02738 5.14652 5.24324 5.25958 5.29324 5.34922 5.37786 5.45826 5.49554 5.51344 5.57599 6.07756 6.51084 6.69168 7.10564 7.25765 8.74225 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.024846 B = 0.003596 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.683352 B = 7784.947403 C = 8614.880022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C -0.050 4.050 4 C -0.180 4.180 5 S 0.214 5.786 6 C -0.295 4.295 7 C 0.577 3.423 8 O -0.585 6.585 9 N -0.697 5.697 10 C 0.242 3.758 11 H 0.026 0.974 12 C -0.156 4.156 13 C -0.538 4.538 14 H 0.056 0.944 15 C 0.032 3.968 16 N -0.930 5.930 17 Si 0.939 3.061 18 H -0.257 1.257 19 H -0.289 1.289 20 H -0.263 1.263 21 C -0.048 4.048 22 C -0.124 4.124 23 C -0.060 4.060 24 C -0.145 4.145 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.054 0.946 30 H 0.084 0.916 31 H 0.103 0.897 32 H 0.401 0.599 33 H 0.045 0.955 34 H 0.066 0.934 35 H 0.046 0.954 36 H 0.272 0.728 37 H 0.144 0.856 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.059 0.941 41 H 0.043 0.957 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.892 4.045 -15.788 26.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.089 4.089 4 C -0.300 4.300 5 S 0.485 5.515 6 C -0.415 4.415 7 C 0.365 3.635 8 O -0.468 6.468 9 N -0.345 5.345 10 C 0.138 3.862 11 H 0.044 0.956 12 C -0.214 4.214 13 C -0.576 4.576 14 H 0.074 0.926 15 C -0.168 4.168 16 N -0.569 5.569 17 Si 0.766 3.234 18 H -0.182 1.182 19 H -0.216 1.216 20 H -0.188 1.188 21 C -0.083 4.083 22 C -0.136 4.136 23 C -0.100 4.100 24 C -0.202 4.202 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.102 0.898 31 H 0.121 0.879 32 H 0.236 0.764 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.064 0.936 36 H 0.081 0.919 37 H 0.162 0.838 38 H 0.092 0.908 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.062 0.938 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -20.403 3.990 -14.502 25.347 hybrid contribution 1.372 -0.011 -0.937 1.662 sum -19.031 3.979 -15.439 24.827 Atomic orbital electron populations 1.21753 0.94040 1.02302 1.02561 1.21548 0.96926 0.94980 1.02351 1.20395 0.84938 0.98749 1.04789 1.24447 1.02227 1.06976 0.96368 1.83022 0.92812 1.67914 1.07744 1.24398 0.96564 1.21313 0.99215 1.17486 0.87697 0.75937 0.82368 1.90731 1.43642 1.53555 1.58903 1.45954 1.10088 1.72800 1.05662 1.18849 0.80475 0.93715 0.93168 0.95618 1.22354 1.00347 0.98362 1.00334 1.21200 0.95841 1.41631 0.98954 0.92603 1.25540 1.02029 0.94440 0.94810 1.69969 1.29191 1.45539 1.12184 0.86002 0.79189 0.78803 0.79431 1.18212 1.21641 1.18786 1.20761 0.96787 0.96292 0.94438 1.18780 0.91159 1.05892 0.97784 1.20309 1.01196 0.98694 0.89772 1.21743 1.01433 0.95112 1.01941 0.91561 0.92295 0.92336 0.91551 0.92709 0.89788 0.87894 0.76353 0.93545 0.91526 0.93571 0.91877 0.83841 0.90777 0.89243 0.92204 0.93780 0.90680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.91 71.98 0.71 -0.71 16 2 C -0.12 -1.53 5.92 30.59 0.18 -1.35 16 3 C -0.05 -0.67 5.04 29.85 0.15 -0.52 16 4 C -0.18 -3.63 5.53 24.68 0.14 -3.49 16 5 S 0.21 5.39 22.10 -56.49 -1.25 4.14 16 6 C -0.29 -9.75 6.45 24.08 0.16 -9.59 16 7 C 0.58 24.38 7.75 86.42 0.67 25.05 16 8 O -0.59 -28.61 16.51 -4.36 -0.07 -28.69 16 9 N -0.70 -30.24 5.07 -450.15 -2.28 -32.52 16 10 C 0.24 12.10 2.15 44.24 0.10 12.20 16 11 H 0.03 1.42 6.64 -2.39 -0.02 1.41 16 12 C -0.16 -7.06 8.96 71.98 0.65 -6.42 16 13 C -0.54 -30.24 9.31 25.60 0.24 -30.00 16 14 H 0.06 3.33 7.98 -2.91 -0.02 3.31 16 15 C 0.03 1.83 5.45 84.65 0.46 2.30 16 16 N -0.93 -56.18 13.96 21.45 0.30 -55.88 16 17 Si 0.94 45.22 24.37 68.60 1.67 46.89 16 18 H -0.26 -11.53 6.87 99.48 0.68 -10.85 16 19 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 20 H -0.26 -12.68 6.53 99.48 0.65 -12.03 16 21 C -0.05 -1.39 9.78 21.72 0.21 -1.17 16 22 C -0.12 -2.68 5.04 -21.05 -0.11 -2.79 16 23 C -0.06 -0.91 5.54 29.84 0.17 -0.74 16 24 C -0.14 -1.90 9.83 71.98 0.71 -1.20 16 25 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.07 0.86 7.74 -2.39 -0.02 0.84 16 29 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 30 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.10 1.06 6.39 -2.39 -0.02 1.04 16 32 H 0.40 15.72 7.65 -92.71 -0.71 15.01 16 33 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 35 H 0.05 2.10 3.27 -2.39 -0.01 2.09 16 36 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 37 H 0.14 4.16 8.06 -2.91 -0.02 4.13 16 38 H 0.07 1.11 8.10 -2.38 -0.02 1.09 16 39 H 0.09 1.05 7.06 -2.38 -0.02 1.03 16 40 H 0.06 0.73 7.24 -2.38 -0.02 0.71 16 41 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -68.59 350.87 3.02 -65.57 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: 0.23 Total: 18.91 kcal Atomic # 6 Polarization: -22.86 SS G_CDS: 4.42 Total: -18.43 kcal Atomic # 7 Polarization: -86.42 SS G_CDS: -1.98 Total: -88.40 kcal Atomic # 8 Polarization: -28.61 SS G_CDS: -0.07 Total: -28.69 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.67 Total: 46.89 kcal Atomic # 16 Polarization: 5.39 SS G_CDS: -1.25 Total: 4.14 kcal Total: -68.59 3.02 -65.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064318557.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.771 kcal (2) G-P(sol) polarization free energy of solvation -68.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds