Wall clock time and date at job start Tue Mar 31 2020 08:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52994 * 109.47137 * 2 1 4 4 N 1.46499 * 109.47116 * 179.97438 * 3 2 1 5 5 C 1.36935 * 120.00379 * 272.82510 * 4 3 2 6 6 H 1.07999 * 120.00302 * 176.42017 * 5 4 3 7 7 C 1.38814 * 119.99867 * 356.42187 * 5 4 3 8 8 N 1.31619 * 119.99886 * 30.15887 * 7 5 4 9 9 Si 1.86805 * 119.99954 * 210.16212 * 7 5 4 10 10 H 1.48500 * 109.47193 * 84.99067 * 9 7 5 11 11 H 1.48496 * 109.46739 * 204.99288 * 9 7 5 12 12 H 1.48500 * 109.46716 * 324.98942 * 9 7 5 13 13 C 1.46504 * 119.99751 * 92.82567 * 4 3 2 14 14 C 1.50703 * 109.47152 * 269.99947 * 13 4 3 15 15 C 1.38265 * 119.90679 * 270.02689 * 14 13 4 16 16 C 1.38203 * 120.16565 * 179.72158 * 15 14 13 17 17 C 1.38791 * 119.97446 * 0.52876 * 16 15 14 18 18 S 1.76195 * 120.09611 * 179.74903 * 17 16 15 19 19 C 1.81408 * 103.00038 * 359.71848 * 18 17 16 20 20 C 1.39365 * 119.80698 * 359.47024 * 17 16 15 21 21 O 1.36013 * 120.08203 * 180.23348 * 20 17 16 22 22 C 1.42895 * 117.00174 * 179.97438 * 21 20 17 23 23 C 1.38301 * 119.90449 * 89.99758 * 14 13 4 24 24 H 1.08999 * 109.47029 * 300.00154 * 1 2 3 25 25 H 1.08999 * 109.46722 * 60.00250 * 1 2 3 26 26 H 1.08995 * 109.47094 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47029 * 239.99846 * 2 1 3 28 28 H 1.08999 * 109.46722 * 119.99750 * 2 1 3 29 29 H 1.08999 * 109.47286 * 60.00003 * 3 2 1 30 30 H 1.09000 * 109.47532 * 299.99837 * 3 2 1 31 31 H 0.96997 * 119.99597 * 180.02562 * 8 7 5 32 32 H 1.09005 * 109.47208 * 150.00018 * 13 4 3 33 33 H 1.08999 * 109.47265 * 30.00160 * 13 4 3 34 34 H 1.08004 * 119.91653 * 359.97438 * 15 14 13 35 35 H 1.08000 * 120.01356 * 180.25102 * 16 15 14 36 36 H 1.08996 * 109.46913 * 300.00354 * 19 18 17 37 37 H 1.09002 * 109.46982 * 60.00012 * 19 18 17 38 38 H 1.09001 * 109.46930 * 179.97438 * 19 18 17 39 39 H 1.08997 * 109.47386 * 299.99854 * 22 21 20 40 40 H 1.08998 * 109.47274 * 60.00000 * 22 21 20 41 41 H 1.09003 * 109.47015 * 179.97438 * 22 21 20 42 42 H 1.08000 * 119.98844 * 0.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1893 1.3842 1.1853 6 1 5.2677 1.3258 1.1838 7 6 3.4968 1.4001 2.3883 8 7 2.2851 0.8908 2.4568 9 14 4.2847 2.1443 3.9098 10 1 4.0527 3.6111 3.9202 11 1 3.6829 1.5392 5.1250 12 1 5.7448 1.8742 3.8934 13 6 4.2381 1.5048 -1.2663 14 6 4.4894 0.1070 -1.7706 15 6 5.6419 -0.5620 -1.4019 16 6 5.8751 -1.8461 -1.8565 17 6 4.9562 -2.4627 -2.6942 18 16 5.2534 -4.0972 -3.2811 19 6 6.8519 -4.5153 -2.5321 20 6 3.7949 -1.7873 -3.0652 21 8 2.8883 -2.3881 -3.8820 22 6 1.7211 -1.6361 -4.2199 23 6 3.5664 -0.5030 -2.6004 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6768 1.9563 -0.8900 31 1 1.8011 0.9023 3.2974 32 1 5.1905 2.0116 -1.1106 33 1 3.6493 2.0553 -2.0000 34 1 6.3597 -0.0814 -0.7536 35 1 6.7742 -2.3679 -1.5637 36 1 7.6075 -3.8055 -2.8685 37 1 6.7676 -4.4689 -1.4463 38 1 7.1407 -5.5230 -2.8309 39 1 1.1749 -1.3850 -3.3107 40 1 2.0148 -0.7199 -4.7320 41 1 1.0835 -2.2297 -4.8750 42 1 2.6673 0.0225 -2.8863 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068812301.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:55 Heat of formation + Delta-G solvation = 14.067146 kcal Electronic energy + Delta-G solvation = -22434.759731 eV Core-core repulsion = 19314.510587 eV Total energy + Delta-G solvation = -3120.249144 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.75921 -37.44069 -35.92802 -32.41067 -31.85947 -30.34886 -29.77949 -28.73466 -27.17407 -25.66139 -25.51637 -22.30990 -21.78147 -20.72273 -19.91695 -17.81345 -16.82479 -16.60354 -15.75010 -15.51150 -15.03431 -14.78885 -14.18961 -13.79143 -13.68312 -13.67004 -13.50668 -13.26408 -13.02185 -12.47885 -12.38025 -12.11568 -11.79870 -11.68199 -11.52633 -11.10452 -10.94270 -10.79795 -10.72858 -10.67789 -10.35200 -10.07641 -9.97451 -9.93016 -9.72507 -9.33775 -8.99554 -8.24306 -8.02012 -7.05826 -6.85155 -5.83232 -3.04595 1.64174 1.77813 1.87916 2.69249 3.38362 3.46718 3.47685 3.52769 4.11062 4.51747 5.09055 5.11144 5.11231 5.20838 5.26662 5.34827 5.51500 5.55235 5.58898 5.61877 5.71496 5.74684 5.93262 6.12148 6.22470 6.23550 6.32608 6.53170 6.55909 6.58213 6.64127 6.74899 6.94473 7.13449 7.20443 7.24165 7.30640 7.66634 7.68866 7.81326 8.14159 8.29471 9.19702 9.81990 10.26217 11.19716 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.015951 B = 0.005270 C = 0.004473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.906664 B = 5311.465636 C = 6258.673653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.129 4.129 3 C 0.169 3.831 4 N -0.587 5.587 5 C -0.252 4.252 6 H 0.077 0.923 7 C 0.004 3.996 8 N -0.883 5.883 9 Si 0.889 3.111 10 H -0.289 1.289 11 H -0.294 1.294 12 H -0.282 1.282 13 C 0.181 3.819 14 C -0.042 4.042 15 C -0.122 4.122 16 C -0.097 4.097 17 C -0.136 4.136 18 S -0.115 6.115 19 C -0.148 4.148 20 C 0.141 3.859 21 O -0.314 6.314 22 C 0.029 3.971 23 C -0.179 4.179 24 H 0.051 0.949 25 H 0.028 0.972 26 H 0.031 0.969 27 H 0.024 0.976 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.003 0.997 31 H 0.252 0.748 32 H 0.059 0.941 33 H 0.049 0.951 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.102 0.898 39 H 0.057 0.943 40 H 0.052 0.948 41 H 0.095 0.905 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.866 -5.151 -11.410 12.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.168 4.168 3 C 0.044 3.956 4 N -0.306 5.306 5 C -0.380 4.380 6 H 0.094 0.906 7 C -0.194 4.194 8 N -0.528 5.528 9 Si 0.718 3.282 10 H -0.216 1.216 11 H -0.221 1.221 12 H -0.208 1.208 13 C 0.053 3.947 14 C -0.049 4.049 15 C -0.143 4.143 16 C -0.121 4.121 17 C -0.248 4.248 18 S 0.125 5.875 19 C -0.316 4.316 20 C 0.091 3.909 21 O -0.227 6.227 22 C -0.066 4.066 23 C -0.200 4.200 24 H 0.070 0.930 25 H 0.047 0.953 26 H 0.050 0.950 27 H 0.042 0.958 28 H 0.114 0.886 29 H 0.108 0.892 30 H 0.021 0.979 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.120 0.880 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.113 0.887 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.143 -6.095 -12.034 13.659 hybrid contribution 0.879 1.107 1.853 2.331 sum 3.021 -4.988 -10.181 11.733 Atomic orbital electron populations 1.21634 0.98851 0.99113 0.99876 1.22175 0.92526 1.00519 1.01601 1.21120 0.81586 0.94646 0.98230 1.44503 1.01871 1.83970 1.00209 1.19233 0.90974 1.44632 0.83182 0.90552 1.24704 0.96552 1.00822 0.97278 1.70261 1.13554 1.43768 1.25196 0.86490 0.78753 0.80036 0.82886 1.21586 1.22098 1.20806 1.19921 0.96872 0.89584 0.88302 1.21102 0.91774 1.00567 0.91410 1.20803 0.98365 0.94241 1.00888 1.20874 0.97965 0.95839 0.97399 1.20637 0.98090 0.98479 1.07641 1.85352 1.24968 1.13198 1.64020 1.23637 0.98228 1.05329 1.04448 1.18298 0.88765 0.91422 0.92397 1.86066 1.30594 1.42982 1.63106 1.23010 0.86057 0.96820 1.00753 1.20935 1.01534 0.94243 1.03293 0.92977 0.95319 0.95012 0.95768 0.88570 0.89241 0.97871 0.93749 0.92264 0.93290 0.86013 0.86136 0.90155 0.90002 0.87980 0.92402 0.92898 0.88667 0.85680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 9.91 37.16 0.37 -2.27 16 2 C -0.13 -2.89 5.71 -26.73 -0.15 -3.04 16 3 C 0.17 3.89 4.99 -4.05 -0.02 3.87 16 4 N -0.59 -13.74 2.52 -174.61 -0.44 -14.18 16 5 C -0.25 -6.49 9.68 -15.06 -0.15 -6.64 16 6 H 0.08 1.94 7.99 -52.49 -0.42 1.52 16 7 C 0.00 0.11 4.97 -17.43 -0.09 0.03 16 8 N -0.88 -23.78 8.38 55.49 0.47 -23.32 16 9 Si 0.89 20.98 29.65 -169.99 -5.04 15.94 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 C 0.18 3.53 5.83 -5.19 -0.03 3.50 16 14 C -0.04 -0.80 5.42 -104.59 -0.57 -1.37 16 15 C -0.12 -2.21 9.69 -39.58 -0.38 -2.59 16 16 C -0.10 -1.63 9.36 -39.39 -0.37 -2.00 16 17 C -0.14 -2.35 6.12 -38.96 -0.24 -2.59 16 18 S -0.11 -1.72 22.05 -107.50 -2.37 -4.09 16 19 C -0.15 -1.60 9.15 101.05 0.92 -0.67 16 20 C 0.14 2.52 6.69 -39.07 -0.26 2.26 16 21 O -0.31 -5.20 9.87 -19.78 -0.20 -5.39 16 22 C 0.03 0.36 9.81 101.05 0.99 1.35 16 23 C -0.18 -3.20 6.66 -39.47 -0.26 -3.47 16 24 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.02 0.52 5.68 -51.93 -0.30 0.23 16 28 H 0.10 2.55 6.31 -51.93 -0.33 2.23 16 29 H 0.09 2.31 5.81 -51.93 -0.30 2.01 16 30 H 0.00 0.06 7.86 -51.93 -0.41 -0.34 16 31 H 0.25 6.70 8.31 -40.82 -0.34 6.36 16 32 H 0.06 1.11 7.98 -51.93 -0.41 0.69 16 33 H 0.05 0.87 7.81 -51.93 -0.41 0.47 16 34 H 0.12 2.12 8.06 -52.48 -0.42 1.70 16 35 H 0.12 1.70 5.88 -52.49 -0.31 1.39 16 36 H 0.08 0.80 7.76 -51.93 -0.40 0.39 16 37 H 0.08 0.89 7.74 -51.92 -0.40 0.48 16 38 H 0.10 0.88 8.14 -51.92 -0.42 0.46 16 39 H 0.06 0.76 7.67 -51.93 -0.40 0.36 16 40 H 0.05 0.60 7.66 -51.93 -0.40 0.20 16 41 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.13 2.10 6.13 -52.49 -0.32 1.77 16 LS Contribution 347.13 15.07 5.23 5.23 Total: -1.00 -28.49 347.13 -9.05 -37.55 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -6.47 Total: 1.88 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: -0.23 Total: -13.63 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: 0.03 Total: -37.50 kcal Atomic # 8 Polarization: -5.20 SS G_CDS: -0.20 Total: -5.39 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.04 Total: 15.94 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.37 Total: -4.09 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.49 -9.05 -37.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068812301.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.616 kcal (2) G-P(sol) polarization free energy of solvation -28.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds