Wall clock time and date at job start Tue Mar 31 2020 08:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52994 * 109.47137 * 2 1 4 4 N 1.46499 * 109.47116 * 179.97438 * 3 2 1 5 5 C 1.36935 * 120.00379 * 272.82510 * 4 3 2 6 6 H 1.07999 * 120.00302 * 176.42017 * 5 4 3 7 7 C 1.38814 * 119.99867 * 356.42187 * 5 4 3 8 8 N 1.31619 * 119.99886 * 30.15887 * 7 5 4 9 9 Si 1.86805 * 119.99954 * 210.16212 * 7 5 4 10 10 H 1.48500 * 109.47193 * 84.99067 * 9 7 5 11 11 H 1.48496 * 109.46739 * 204.99288 * 9 7 5 12 12 H 1.48500 * 109.46716 * 324.98942 * 9 7 5 13 13 C 1.46504 * 119.99751 * 92.82567 * 4 3 2 14 14 C 1.50703 * 109.47152 * 269.99947 * 13 4 3 15 15 C 1.38265 * 119.90679 * 270.02689 * 14 13 4 16 16 C 1.38203 * 120.16565 * 179.72158 * 15 14 13 17 17 C 1.38791 * 119.97446 * 0.52876 * 16 15 14 18 18 S 1.76195 * 120.09611 * 179.74903 * 17 16 15 19 19 C 1.81408 * 103.00038 * 359.71848 * 18 17 16 20 20 C 1.39365 * 119.80698 * 359.47024 * 17 16 15 21 21 O 1.36013 * 120.08203 * 180.23348 * 20 17 16 22 22 C 1.42895 * 117.00174 * 179.97438 * 21 20 17 23 23 C 1.38301 * 119.90449 * 89.99758 * 14 13 4 24 24 H 1.08999 * 109.47029 * 300.00154 * 1 2 3 25 25 H 1.08999 * 109.46722 * 60.00250 * 1 2 3 26 26 H 1.08995 * 109.47094 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47029 * 239.99846 * 2 1 3 28 28 H 1.08999 * 109.46722 * 119.99750 * 2 1 3 29 29 H 1.08999 * 109.47286 * 60.00003 * 3 2 1 30 30 H 1.09000 * 109.47532 * 299.99837 * 3 2 1 31 31 H 0.96997 * 119.99597 * 180.02562 * 8 7 5 32 32 H 1.09005 * 109.47208 * 150.00018 * 13 4 3 33 33 H 1.08999 * 109.47265 * 30.00160 * 13 4 3 34 34 H 1.08004 * 119.91653 * 359.97438 * 15 14 13 35 35 H 1.08000 * 120.01356 * 180.25102 * 16 15 14 36 36 H 1.08996 * 109.46913 * 300.00354 * 19 18 17 37 37 H 1.09002 * 109.46982 * 60.00012 * 19 18 17 38 38 H 1.09001 * 109.46930 * 179.97438 * 19 18 17 39 39 H 1.08997 * 109.47386 * 299.99854 * 22 21 20 40 40 H 1.08998 * 109.47274 * 60.00000 * 22 21 20 41 41 H 1.09003 * 109.47015 * 179.97438 * 22 21 20 42 42 H 1.08000 * 119.98844 * 0.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1893 1.3842 1.1853 6 1 5.2677 1.3258 1.1838 7 6 3.4968 1.4001 2.3883 8 7 2.2851 0.8908 2.4568 9 14 4.2847 2.1443 3.9098 10 1 4.0527 3.6111 3.9202 11 1 3.6829 1.5392 5.1250 12 1 5.7448 1.8742 3.8934 13 6 4.2381 1.5048 -1.2663 14 6 4.4894 0.1070 -1.7706 15 6 5.6419 -0.5620 -1.4019 16 6 5.8751 -1.8461 -1.8565 17 6 4.9562 -2.4627 -2.6942 18 16 5.2534 -4.0972 -3.2811 19 6 6.8519 -4.5153 -2.5321 20 6 3.7949 -1.7873 -3.0652 21 8 2.8883 -2.3881 -3.8820 22 6 1.7211 -1.6361 -4.2199 23 6 3.5664 -0.5030 -2.6004 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6768 1.9563 -0.8900 31 1 1.8011 0.9023 3.2974 32 1 5.1905 2.0116 -1.1106 33 1 3.6493 2.0553 -2.0000 34 1 6.3597 -0.0814 -0.7536 35 1 6.7742 -2.3679 -1.5637 36 1 7.6075 -3.8055 -2.8685 37 1 6.7676 -4.4689 -1.4463 38 1 7.1407 -5.5230 -2.8309 39 1 1.1749 -1.3850 -3.3107 40 1 2.0148 -0.7199 -4.7320 41 1 1.0835 -2.2297 -4.8750 42 1 2.6673 0.0225 -2.8863 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068812301.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:54 Heat of formation + Delta-G solvation = 0.645609 kcal Electronic energy + Delta-G solvation = -22435.341732 eV Core-core repulsion = 19314.510587 eV Total energy + Delta-G solvation = -3120.831145 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.05394 -38.83902 -37.56543 -33.98566 -33.67350 -31.87727 -31.10511 -29.70223 -28.35327 -27.35686 -27.12573 -23.96260 -23.07807 -22.23422 -21.68764 -19.08598 -18.62973 -17.90024 -17.14828 -16.87723 -16.62375 -15.99449 -15.66830 -15.38535 -15.28793 -14.87925 -14.71397 -14.59792 -14.55463 -13.85669 -13.63995 -13.44750 -13.26070 -13.13747 -12.90735 -12.80597 -12.55419 -12.41627 -12.23432 -12.07786 -11.97254 -11.76604 -11.65689 -11.53367 -11.11732 -11.07942 -10.44591 -10.12301 -9.35815 -8.87166 -8.12786 -7.79164 -5.01147 0.28400 0.51973 0.67085 1.48962 1.54236 1.58452 1.59976 2.37745 2.54504 2.78322 3.27749 3.83305 3.87163 4.01748 4.23565 4.29039 4.31026 4.37795 4.39274 4.39636 4.54872 4.57130 4.66667 4.71379 4.72809 4.87141 4.87931 4.91968 4.97253 5.05854 5.20785 5.24605 5.34662 5.51255 5.55659 5.69879 5.79982 5.84701 5.93966 6.25331 6.37358 6.41649 7.25579 7.96273 8.36263 9.21568 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.015951 B = 0.005270 C = 0.004473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.906664 B = 5311.465636 C = 6258.673653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.116 4.116 3 C 0.175 3.825 4 N -0.601 5.601 5 C -0.254 4.254 6 H 0.074 0.926 7 C -0.042 4.042 8 N -0.902 5.902 9 Si 0.941 3.059 10 H -0.291 1.291 11 H -0.304 1.304 12 H -0.277 1.277 13 C 0.181 3.819 14 C -0.057 4.057 15 C -0.136 4.136 16 C -0.098 4.098 17 C -0.146 4.146 18 S -0.137 6.137 19 C -0.139 4.139 20 C 0.130 3.870 21 O -0.325 6.325 22 C 0.021 3.979 23 C -0.181 4.181 24 H 0.038 0.962 25 H 0.054 0.946 26 H 0.042 0.958 27 H 0.027 0.973 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.023 0.977 31 H 0.244 0.756 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.123 0.877 35 H 0.146 0.854 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.128 0.872 39 H 0.051 0.949 40 H 0.065 0.935 41 H 0.124 0.876 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.468 -5.871 -12.819 14.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.155 4.155 3 C 0.050 3.950 4 N -0.321 5.321 5 C -0.383 4.383 6 H 0.092 0.908 7 C -0.238 4.238 8 N -0.548 5.548 9 Si 0.771 3.229 10 H -0.219 1.219 11 H -0.231 1.231 12 H -0.202 1.202 13 C 0.054 3.946 14 C -0.063 4.063 15 C -0.157 4.157 16 C -0.121 4.121 17 C -0.259 4.259 18 S 0.102 5.898 19 C -0.307 4.307 20 C 0.079 3.921 21 O -0.239 6.239 22 C -0.073 4.073 23 C -0.202 4.202 24 H 0.058 0.942 25 H 0.073 0.927 26 H 0.061 0.939 27 H 0.046 0.954 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.041 0.959 31 H 0.054 0.946 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.141 0.859 35 H 0.163 0.837 36 H 0.111 0.889 37 H 0.102 0.898 38 H 0.146 0.854 39 H 0.069 0.931 40 H 0.083 0.917 41 H 0.142 0.858 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.765 -6.821 -13.480 15.359 hybrid contribution 0.753 1.239 2.144 2.588 sum 3.518 -5.582 -11.336 13.117 Atomic orbital electron populations 1.21531 0.96558 1.00039 1.00485 1.21941 0.94514 0.99592 0.99500 1.20947 0.81722 0.94798 0.97569 1.44566 1.02121 1.84476 1.00932 1.19407 0.91052 1.43578 0.84261 0.90765 1.25244 0.97339 1.01860 0.99341 1.70423 1.14500 1.44934 1.24952 0.85658 0.78136 0.78873 0.80188 1.21885 1.23101 1.20250 1.20010 0.96964 0.90422 0.87167 1.20989 0.92705 0.99923 0.92673 1.20954 0.98473 0.95060 1.01206 1.21135 0.98752 0.95403 0.96813 1.20997 0.97991 0.99690 1.07204 1.85388 1.28222 1.11701 1.64475 1.23759 0.95642 1.07069 1.04240 1.18501 0.89397 0.91514 0.92642 1.86062 1.31363 1.43829 1.62682 1.23287 0.85083 0.97850 1.01073 1.21010 1.01551 0.94518 1.03138 0.94247 0.92741 0.93933 0.95405 0.92896 0.92298 0.95865 0.94648 0.91842 0.91575 0.85922 0.83661 0.88870 0.89773 0.85386 0.93063 0.91660 0.85815 0.84834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.82 9.91 71.99 0.71 -4.11 16 2 C -0.12 -5.19 5.71 30.60 0.17 -5.02 16 3 C 0.17 8.03 4.99 86.38 0.43 8.47 16 4 N -0.60 -28.11 2.52 -706.34 -1.78 -29.88 16 5 C -0.25 -13.17 9.68 84.03 0.81 -12.35 16 6 H 0.07 3.80 7.99 -2.91 -0.02 3.77 16 7 C -0.04 -2.26 4.97 84.86 0.42 -1.84 16 8 N -0.90 -49.83 8.38 21.65 0.18 -49.65 16 9 Si 0.94 43.87 29.65 68.60 2.03 45.90 16 10 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 11 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 12 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 13 C 0.18 6.92 5.83 85.63 0.50 7.42 16 14 C -0.06 -2.12 5.42 -19.84 -0.11 -2.23 16 15 C -0.14 -4.83 9.69 22.27 0.22 -4.62 16 16 C -0.10 -3.13 9.36 22.39 0.21 -2.92 16 17 C -0.15 -4.88 6.12 22.67 0.14 -4.74 16 18 S -0.14 -3.86 22.05 -56.49 -1.25 -5.11 16 19 C -0.14 -2.59 9.15 113.37 1.04 -1.55 16 20 C 0.13 4.49 6.69 22.60 0.15 4.64 16 21 O -0.33 -10.31 9.87 -93.69 -0.92 -11.24 16 22 C 0.02 0.49 9.81 113.37 1.11 1.61 16 23 C -0.18 -6.30 6.66 22.34 0.15 -6.15 16 24 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.03 1.20 5.68 -2.39 -0.01 1.18 16 28 H 0.05 2.86 6.31 -2.39 -0.02 2.85 16 29 H 0.06 3.09 5.81 -2.39 -0.01 3.08 16 30 H 0.02 0.95 7.86 -2.39 -0.02 0.94 16 31 H 0.24 13.37 8.31 -92.71 -0.77 12.60 16 32 H 0.06 2.34 7.98 -2.38 -0.02 2.32 16 33 H 0.07 2.27 7.81 -2.39 -0.02 2.25 16 34 H 0.12 4.22 8.06 -2.91 -0.02 4.20 16 35 H 0.15 3.77 5.88 -2.91 -0.02 3.75 16 36 H 0.09 1.54 7.76 -2.39 -0.02 1.52 16 37 H 0.08 1.58 7.74 -2.39 -0.02 1.56 16 38 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.05 1.25 7.67 -2.39 -0.02 1.23 16 40 H 0.06 1.34 7.66 -2.39 -0.02 1.32 16 41 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.13 4.28 6.13 -2.91 -0.02 4.26 16 Total: -1.00 -61.70 347.13 5.23 -56.47 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: 1.00 Total: 16.89 kcal Atomic # 6 Polarization: -29.35 SS G_CDS: 5.96 Total: -23.39 kcal Atomic # 7 Polarization: -77.94 SS G_CDS: -1.60 Total: -79.53 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: -0.92 Total: -11.24 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: -3.86 SS G_CDS: -1.25 Total: -5.11 kcal Total: -61.70 5.23 -56.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068812301.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.120 kcal (2) G-P(sol) polarization free energy of solvation -61.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds