Wall clock time and date at job start Tue Mar 31 2020 06:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50702 * 109.47092 * 2 1 4 4 C 1.38379 * 119.84544 * 90.00271 * 3 2 1 5 5 C 1.37925 * 120.15537 * 180.02562 * 4 3 2 6 6 C 1.39667 * 119.84155 * 0.02562 * 5 4 3 7 7 C 1.47691 * 120.15201 * 180.02562 * 6 5 4 8 8 O 1.21576 * 120.00035 * 26.48996 * 7 6 5 9 9 N 1.34780 * 119.99873 * 206.49918 * 7 6 5 10 10 C 1.36927 * 120.00101 * 183.29491 * 9 7 6 11 11 H 1.07993 * 119.99705 * 225.26032 * 10 9 7 12 12 C 1.38974 * 120.00058 * 45.25091 * 10 9 7 13 13 N 1.31380 * 120.00202 * 23.91958 * 12 10 9 14 14 Si 1.86807 * 120.00093 * 203.91717 * 12 10 9 15 15 H 1.48498 * 109.46856 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.47156 * 119.99876 * 14 12 10 17 17 H 1.48499 * 109.46901 * 240.00204 * 14 12 10 18 18 C 1.39708 * 119.99840 * 3.28472 * 9 7 6 19 19 C 1.38976 * 120.08049 * 50.34274 * 18 9 7 20 20 C 1.38078 * 119.91998 * 179.76256 * 19 18 9 21 21 C 1.38309 * 120.07838 * 0.48614 * 20 19 18 22 22 C 1.38310 * 120.16421 * 359.76427 * 21 20 19 23 23 C 1.38081 * 120.07494 * 0.02562 * 22 21 20 24 24 C 1.39661 * 119.69695 * 0.27893 * 6 5 4 25 25 C 1.37929 * 119.84212 * 359.42120 * 24 6 5 26 26 H 1.08996 * 109.47094 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46994 * 299.99913 * 1 2 3 28 28 H 1.09000 * 109.47042 * 59.99882 * 1 2 3 29 29 H 1.09002 * 109.46994 * 240.00087 * 2 1 3 30 30 H 1.09000 * 109.47042 * 120.00118 * 2 1 3 31 31 H 1.08008 * 119.92273 * 0.02562 * 4 3 2 32 32 H 1.08000 * 120.08407 * 179.97438 * 5 4 3 33 33 H 0.97001 * 119.99876 * 184.91718 * 13 12 10 34 34 H 1.08003 * 120.03885 * 359.97438 * 19 18 9 35 35 H 1.07995 * 119.96076 * 180.23350 * 20 19 18 36 36 H 1.08008 * 119.92189 * 179.74937 * 21 20 19 37 37 H 1.07998 * 119.96565 * 179.97438 * 22 21 20 38 38 H 1.08002 * 120.03759 * 179.97438 * 23 22 21 39 39 H 1.08002 * 120.08338 * 179.69536 * 24 6 5 40 40 H 1.08005 * 119.92335 * 180.27675 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2620 2.0701 1.2003 5 6 2.7212 3.3706 1.2077 6 6 2.9540 4.0324 0.0000 7 6 3.4463 5.4249 0.0000 8 8 4.0925 5.8412 0.9419 9 7 3.1789 6.2341 -1.0441 10 6 3.6918 7.5033 -1.0755 11 1 3.0606 8.3340 -1.3545 12 6 5.0245 7.7225 -0.7482 13 7 5.8988 6.7490 -0.8665 14 14 5.5730 9.4015 -0.1400 15 1 4.4052 10.3177 -0.0959 16 1 6.1503 9.2703 1.2219 17 1 6.5993 9.9509 -1.0620 18 6 2.3787 5.7779 -2.0945 19 6 1.1486 5.1886 -1.8279 20 6 0.3582 4.7433 -2.8688 21 6 0.7937 4.8740 -4.1750 22 6 2.0196 5.4552 -4.4439 23 6 2.8135 5.9068 -3.4082 24 6 2.7140 3.3732 -1.2076 25 6 2.2607 2.0705 -1.2002 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 2.0811 1.5572 2.1334 32 1 2.8996 3.8764 2.1451 33 1 6.8134 6.8799 -0.5712 34 1 0.8098 5.0822 -0.8079 35 1 -0.5995 4.2887 -2.6625 36 1 0.1752 4.5211 -4.9870 37 1 2.3567 5.5553 -5.4650 38 1 3.7708 6.3602 -3.6189 39 1 2.8872 3.8807 -2.1451 40 1 2.0790 1.5580 -2.1334 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072680014.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:56 Heat of formation + Delta-G solvation = 31.949483 kcal Electronic energy + Delta-G solvation = -23752.894464 eV Core-core repulsion = 20497.976806 eV Total energy + Delta-G solvation = -3254.917659 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.26958 -38.35711 -37.45289 -34.40508 -33.85509 -32.13209 -30.69176 -30.11498 -29.18069 -28.64421 -25.42700 -23.83004 -22.41630 -22.03792 -21.62561 -20.86436 -19.57766 -17.40816 -17.16216 -15.66243 -15.47873 -15.19118 -15.05394 -14.45522 -14.22418 -13.92109 -13.66173 -13.48065 -13.41431 -13.11163 -12.94108 -12.73387 -12.65918 -12.19125 -11.89244 -11.64056 -11.38557 -11.11924 -11.08697 -10.86794 -10.83457 -10.69749 -10.48451 -10.41322 -10.29439 -9.09960 -8.72350 -8.56409 -8.40888 -8.28059 -7.96002 -7.06527 -6.36660 -4.09939 1.45426 1.75725 2.00583 2.13377 3.22989 3.34022 3.35870 3.78531 4.15464 4.38437 4.60421 4.70819 4.90831 5.00913 5.15668 5.35435 5.40063 5.41704 5.47180 5.49983 5.56919 5.62189 5.75386 5.82128 5.83314 5.93290 6.05664 6.14133 6.17520 6.22400 6.33471 6.44803 6.52192 6.65193 6.80776 6.93740 6.97137 7.04398 7.12710 7.26375 7.37743 7.44592 7.57483 8.12430 8.75439 8.90011 9.36150 9.92842 10.70063 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.016189 B = 0.006101 C = 0.004765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.103756 B = 4588.533334 C = 5874.725039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.083 4.083 3 C -0.079 4.079 4 C -0.134 4.134 5 C -0.074 4.074 6 C -0.113 4.113 7 C 0.528 3.472 8 O -0.521 6.521 9 N -0.399 5.399 10 C -0.354 4.354 11 H 0.088 0.912 12 C 0.080 3.920 13 N -0.828 5.828 14 Si 0.913 3.087 15 H -0.267 1.267 16 H -0.277 1.277 17 H -0.283 1.283 18 C 0.172 3.828 19 C -0.152 4.152 20 C -0.104 4.104 21 C -0.165 4.165 22 C -0.106 4.106 23 C -0.138 4.138 24 C -0.080 4.080 25 C -0.129 4.129 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.118 0.882 32 H 0.126 0.874 33 H 0.270 0.730 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.114 0.886 38 H 0.129 0.871 39 H 0.138 0.862 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.365 -10.257 -2.978 14.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 C -0.080 4.080 4 C -0.152 4.152 5 C -0.093 4.093 6 C -0.116 4.116 7 C 0.319 3.681 8 O -0.398 6.398 9 N -0.112 5.112 10 C -0.479 4.479 11 H 0.105 0.895 12 C -0.132 4.132 13 N -0.460 5.460 14 Si 0.739 3.261 15 H -0.191 1.191 16 H -0.203 1.203 17 H -0.209 1.209 18 C 0.076 3.924 19 C -0.173 4.173 20 C -0.122 4.122 21 C -0.184 4.184 22 C -0.124 4.124 23 C -0.158 4.158 24 C -0.098 4.098 25 C -0.147 4.147 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.136 0.864 32 H 0.144 0.856 33 H 0.080 0.920 34 H 0.132 0.868 35 H 0.130 0.870 36 H 0.128 0.872 37 H 0.132 0.868 38 H 0.147 0.853 39 H 0.156 0.844 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.735 -10.026 -2.439 13.519 hybrid contribution 0.454 0.747 0.244 0.908 sum -8.281 -9.279 -2.195 12.629 Atomic orbital electron populations 1.21741 0.94954 1.01236 1.02335 1.20518 0.95994 0.93054 1.02441 1.19910 0.98962 0.95780 0.93306 1.20817 1.02296 0.94857 0.97202 1.21151 0.96554 0.94056 0.97561 1.20346 1.01676 0.95787 0.93828 1.18143 0.82664 0.84794 0.82540 1.90600 1.39395 1.75571 1.34257 1.41012 1.43780 1.12934 1.13480 1.19117 0.93658 0.82034 1.53077 0.89468 1.25305 0.95035 0.98652 0.94209 1.69912 1.03795 1.34326 1.37945 0.86148 0.78645 0.82424 0.78926 1.19139 1.20251 1.20932 1.18327 0.91094 0.93399 0.89580 1.21108 0.93673 1.03220 0.99276 1.20739 0.98883 1.00143 0.92469 1.20842 0.97375 1.04011 0.96155 1.20929 0.94511 0.98680 0.98312 1.21204 1.00566 1.02560 0.91486 1.21970 0.95243 0.94101 0.98495 1.20838 1.02057 0.94693 0.97105 0.92788 0.92604 0.92458 0.91284 0.91366 0.86420 0.85607 0.91960 0.86760 0.86970 0.87184 0.86807 0.85327 0.84425 0.86466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.90 37.16 0.37 -1.03 16 2 C -0.08 -0.90 6.06 -27.88 -0.17 -1.07 16 3 C -0.08 -1.14 5.14 -104.52 -0.54 -1.68 16 4 C -0.13 -2.06 9.68 -39.64 -0.38 -2.45 16 5 C -0.07 -1.40 9.59 -39.16 -0.38 -1.78 16 6 C -0.11 -2.43 4.59 -104.97 -0.48 -2.92 16 7 C 0.53 13.80 6.58 -12.40 -0.08 13.72 16 8 O -0.52 -15.36 14.90 5.30 0.08 -15.28 16 9 N -0.40 -10.22 2.63 -60.03 -0.16 -10.38 16 10 C -0.35 -9.68 8.57 -15.00 -0.13 -9.81 16 11 H 0.09 2.33 7.94 -52.49 -0.42 1.92 16 12 C 0.08 2.22 4.20 -17.47 -0.07 2.14 16 13 N -0.83 -23.98 12.38 55.50 0.69 -23.29 16 14 Si 0.91 21.52 29.62 -169.99 -5.03 16.49 16 15 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 C 0.17 3.71 3.39 -83.72 -0.28 3.42 16 19 C -0.15 -2.84 6.12 -39.37 -0.24 -3.08 16 20 C -0.10 -1.61 10.02 -39.61 -0.40 -2.01 16 21 C -0.16 -2.44 10.04 -39.53 -0.40 -2.83 16 22 C -0.11 -1.71 10.04 -39.61 -0.40 -2.11 16 23 C -0.14 -2.76 8.87 -39.36 -0.35 -3.11 16 24 C -0.08 -1.53 6.61 -39.16 -0.26 -1.79 16 25 C -0.13 -2.04 9.68 -39.64 -0.38 -2.42 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 30 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 31 H 0.12 1.49 8.06 -52.48 -0.42 1.07 16 32 H 0.13 2.39 7.87 -52.49 -0.41 1.97 16 33 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 34 H 0.11 2.19 7.21 -52.48 -0.38 1.81 16 35 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 36 H 0.11 1.32 8.06 -52.48 -0.42 0.89 16 37 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 38 H 0.13 2.80 7.94 -52.49 -0.42 2.38 16 39 H 0.14 2.79 4.51 -52.49 -0.24 2.55 16 40 H 0.12 1.59 8.06 -52.48 -0.42 1.17 16 LS Contribution 334.59 15.07 5.04 5.04 Total: -1.00 -31.25 334.59 -9.18 -40.42 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -5.22 Total: 5.79 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: -4.57 Total: -18.80 kcal Atomic # 7 Polarization: -34.20 SS G_CDS: 0.53 Total: -33.67 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: 0.08 Total: -15.28 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.25 -9.18 -40.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072680014.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.370 kcal (2) G-P(sol) polarization free energy of solvation -31.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds