Wall clock time and date at job start Tue Mar 31 2020 06:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50702 * 109.47092 * 2 1 4 4 C 1.38379 * 119.84544 * 90.00271 * 3 2 1 5 5 C 1.37925 * 120.15537 * 180.02562 * 4 3 2 6 6 C 1.39667 * 119.84155 * 0.02562 * 5 4 3 7 7 C 1.47691 * 120.15201 * 180.02562 * 6 5 4 8 8 O 1.21576 * 120.00035 * 26.48996 * 7 6 5 9 9 N 1.34780 * 119.99873 * 206.49918 * 7 6 5 10 10 C 1.36927 * 120.00101 * 183.29491 * 9 7 6 11 11 H 1.07993 * 119.99705 * 225.26032 * 10 9 7 12 12 C 1.38974 * 120.00058 * 45.25091 * 10 9 7 13 13 N 1.31380 * 120.00202 * 23.91958 * 12 10 9 14 14 Si 1.86807 * 120.00093 * 203.91717 * 12 10 9 15 15 H 1.48498 * 109.46856 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.47156 * 119.99876 * 14 12 10 17 17 H 1.48499 * 109.46901 * 240.00204 * 14 12 10 18 18 C 1.39708 * 119.99840 * 3.28472 * 9 7 6 19 19 C 1.38976 * 120.08049 * 50.34274 * 18 9 7 20 20 C 1.38078 * 119.91998 * 179.76256 * 19 18 9 21 21 C 1.38309 * 120.07838 * 0.48614 * 20 19 18 22 22 C 1.38310 * 120.16421 * 359.76427 * 21 20 19 23 23 C 1.38081 * 120.07494 * 0.02562 * 22 21 20 24 24 C 1.39661 * 119.69695 * 0.27893 * 6 5 4 25 25 C 1.37929 * 119.84212 * 359.42120 * 24 6 5 26 26 H 1.08996 * 109.47094 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46994 * 299.99913 * 1 2 3 28 28 H 1.09000 * 109.47042 * 59.99882 * 1 2 3 29 29 H 1.09002 * 109.46994 * 240.00087 * 2 1 3 30 30 H 1.09000 * 109.47042 * 120.00118 * 2 1 3 31 31 H 1.08008 * 119.92273 * 0.02562 * 4 3 2 32 32 H 1.08000 * 120.08407 * 179.97438 * 5 4 3 33 33 H 0.97001 * 119.99876 * 184.91718 * 13 12 10 34 34 H 1.08003 * 120.03885 * 359.97438 * 19 18 9 35 35 H 1.07995 * 119.96076 * 180.23350 * 20 19 18 36 36 H 1.08008 * 119.92189 * 179.74937 * 21 20 19 37 37 H 1.07998 * 119.96565 * 179.97438 * 22 21 20 38 38 H 1.08002 * 120.03759 * 179.97438 * 23 22 21 39 39 H 1.08002 * 120.08338 * 179.69536 * 24 6 5 40 40 H 1.08005 * 119.92335 * 180.27675 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2620 2.0701 1.2003 5 6 2.7212 3.3706 1.2077 6 6 2.9540 4.0324 0.0000 7 6 3.4463 5.4249 0.0000 8 8 4.0925 5.8412 0.9419 9 7 3.1789 6.2341 -1.0441 10 6 3.6918 7.5033 -1.0755 11 1 3.0606 8.3340 -1.3545 12 6 5.0245 7.7225 -0.7482 13 7 5.8988 6.7490 -0.8665 14 14 5.5730 9.4015 -0.1400 15 1 4.4052 10.3177 -0.0959 16 1 6.1503 9.2703 1.2219 17 1 6.5993 9.9509 -1.0620 18 6 2.3787 5.7779 -2.0945 19 6 1.1486 5.1886 -1.8279 20 6 0.3582 4.7433 -2.8688 21 6 0.7937 4.8740 -4.1750 22 6 2.0196 5.4552 -4.4439 23 6 2.8135 5.9068 -3.4082 24 6 2.7140 3.3732 -1.2076 25 6 2.2607 2.0705 -1.2002 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 2.0811 1.5572 2.1334 32 1 2.8996 3.8764 2.1451 33 1 6.8134 6.8799 -0.5712 34 1 0.8098 5.0822 -0.8079 35 1 -0.5995 4.2887 -2.6625 36 1 0.1752 4.5211 -4.9870 37 1 2.3567 5.5553 -5.4650 38 1 3.7708 6.3602 -3.6189 39 1 2.8872 3.8807 -2.1451 40 1 2.0790 1.5580 -2.1334 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072680014.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:56 Heat of formation + Delta-G solvation = 15.236621 kcal Electronic energy + Delta-G solvation = -23753.619189 eV Core-core repulsion = 20497.976806 eV Total energy + Delta-G solvation = -3255.642383 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.86956 -39.70749 -39.14612 -36.22582 -35.06471 -33.98747 -32.10449 -31.49160 -30.47606 -30.17726 -27.22523 -25.17099 -23.82114 -23.43217 -23.03921 -22.16350 -21.20618 -19.22041 -18.79351 -17.12642 -17.01639 -16.83655 -16.37689 -16.07588 -15.80761 -15.51027 -15.01040 -14.89275 -14.65237 -14.49569 -14.26289 -14.12908 -14.07179 -13.61896 -13.56579 -12.98502 -12.95489 -12.82808 -12.58454 -12.31553 -12.12440 -12.05985 -11.91088 -11.81712 -11.58988 -11.03075 -10.50968 -10.21169 -10.05210 -9.65128 -9.41432 -8.79420 -8.41753 -6.21183 0.02051 0.39317 0.59923 0.73954 1.29721 1.37722 1.47019 2.12814 2.29035 2.85001 2.93857 3.02533 3.22857 3.81835 3.93737 4.00624 4.10197 4.17342 4.24271 4.37272 4.42628 4.52369 4.61846 4.66688 4.70327 4.74002 4.81393 4.96332 5.08884 5.12124 5.17061 5.21407 5.26056 5.33096 5.45648 5.49684 5.57208 5.66335 5.70320 5.74221 5.77741 6.02330 6.08274 6.23790 6.79054 6.94319 7.40966 8.01075 8.63820 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.016189 B = 0.006101 C = 0.004765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.103756 B = 4588.533334 C = 5874.725039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.081 4.081 3 C -0.060 4.060 4 C -0.126 4.126 5 C -0.088 4.088 6 C -0.147 4.147 7 C 0.513 3.487 8 O -0.582 6.582 9 N -0.414 5.414 10 C -0.372 4.372 11 H 0.081 0.919 12 C 0.034 3.966 13 N -0.869 5.869 14 Si 0.972 3.028 15 H -0.256 1.256 16 H -0.288 1.288 17 H -0.266 1.266 18 C 0.137 3.863 19 C -0.150 4.150 20 C -0.093 4.093 21 C -0.138 4.138 22 C -0.099 4.099 23 C -0.156 4.156 24 C -0.084 4.084 25 C -0.123 4.123 26 H 0.075 0.925 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.151 0.849 32 H 0.110 0.890 33 H 0.267 0.733 34 H 0.102 0.898 35 H 0.151 0.849 36 H 0.159 0.841 37 H 0.145 0.855 38 H 0.095 0.905 39 H 0.123 0.877 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.556 -13.395 -4.991 19.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 C -0.061 4.061 4 C -0.144 4.144 5 C -0.107 4.107 6 C -0.150 4.150 7 C 0.306 3.694 8 O -0.464 6.464 9 N -0.128 5.128 10 C -0.498 4.498 11 H 0.099 0.901 12 C -0.173 4.173 13 N -0.503 5.503 14 Si 0.795 3.205 15 H -0.180 1.180 16 H -0.215 1.215 17 H -0.191 1.191 18 C 0.044 3.956 19 C -0.170 4.170 20 C -0.111 4.111 21 C -0.156 4.156 22 C -0.117 4.117 23 C -0.177 4.177 24 C -0.102 4.102 25 C -0.141 4.141 26 H 0.094 0.906 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.168 0.832 32 H 0.128 0.872 33 H 0.076 0.924 34 H 0.120 0.880 35 H 0.169 0.831 36 H 0.176 0.824 37 H 0.163 0.837 38 H 0.113 0.887 39 H 0.140 0.860 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -11.978 -13.165 -4.520 18.364 hybrid contribution 1.234 1.538 0.748 2.109 sum -10.744 -11.627 -3.771 16.274 Atomic orbital electron populations 1.21733 0.93645 1.02634 1.02077 1.20632 0.96899 0.90137 1.04129 1.20402 0.96103 0.97463 0.92113 1.21144 1.00715 0.93141 0.99381 1.21196 0.97677 0.95714 0.96149 1.20108 1.05023 0.93907 0.95994 1.18933 0.81862 0.86707 0.81919 1.90516 1.42318 1.77151 1.36392 1.41101 1.44236 1.12632 1.14782 1.19261 0.93745 0.83424 1.53363 0.90145 1.26137 0.95067 1.01953 0.94181 1.70001 1.03827 1.36525 1.39905 0.85256 0.78738 0.78665 0.77832 1.18001 1.21469 1.19103 1.18527 0.91862 0.96253 0.89006 1.21077 0.92946 1.03110 0.99887 1.21165 0.99508 0.98596 0.91840 1.21372 0.96346 1.00824 0.97063 1.21252 0.94581 0.97373 0.98528 1.21122 1.00361 1.03922 0.92256 1.21828 0.96126 0.95503 0.96784 1.21151 1.00691 0.93096 0.99128 0.90630 0.93049 0.92614 0.89634 0.89807 0.83151 0.87186 0.92397 0.88015 0.83118 0.82351 0.83729 0.88693 0.85950 0.83328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.90 71.98 0.71 -1.33 16 2 C -0.08 -1.34 6.06 29.85 0.18 -1.16 16 3 C -0.06 -1.54 5.14 -19.80 -0.10 -1.64 16 4 C -0.13 -3.66 9.68 22.23 0.22 -3.45 16 5 C -0.09 -3.46 9.59 22.54 0.22 -3.25 16 6 C -0.15 -6.69 4.59 -20.09 -0.09 -6.78 16 7 C 0.51 29.11 6.58 86.74 0.57 29.68 16 8 O -0.58 -37.56 14.90 -3.95 -0.06 -37.62 16 9 N -0.41 -22.88 2.63 -462.09 -1.22 -24.10 16 10 C -0.37 -21.98 8.57 84.07 0.72 -21.26 16 11 H 0.08 4.65 7.94 -2.91 -0.02 4.62 16 12 C 0.03 2.02 4.20 84.94 0.36 2.38 16 13 N -0.87 -54.26 12.38 21.67 0.27 -53.99 16 14 Si 0.97 46.92 29.62 68.60 2.03 48.96 16 15 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 16 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 17 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 18 C 0.14 6.18 3.39 38.24 0.13 6.31 16 19 C -0.15 -5.56 6.12 22.41 0.14 -5.43 16 20 C -0.09 -2.53 10.02 22.25 0.22 -2.30 16 21 C -0.14 -3.38 10.04 22.30 0.22 -3.15 16 22 C -0.10 -2.96 10.04 22.25 0.22 -2.74 16 23 C -0.16 -6.46 8.87 22.41 0.20 -6.26 16 24 C -0.08 -3.23 6.61 22.54 0.15 -3.08 16 25 C -0.12 -3.54 9.68 22.23 0.22 -3.32 16 26 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.05 0.78 8.14 -2.39 -0.02 0.77 16 28 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.09 1.22 8.08 -2.39 -0.02 1.20 16 30 H 0.08 1.20 8.08 -2.39 -0.02 1.18 16 31 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 32 H 0.11 4.54 7.87 -2.91 -0.02 4.51 16 33 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 34 H 0.10 3.99 7.21 -2.91 -0.02 3.97 16 35 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 36 H 0.16 2.54 8.06 -2.91 -0.02 2.52 16 37 H 0.14 3.42 8.06 -2.91 -0.02 3.39 16 38 H 0.09 4.49 7.94 -2.91 -0.02 4.46 16 39 H 0.12 5.06 4.51 -2.91 -0.01 5.04 16 40 H 0.15 3.33 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -77.74 334.59 6.33 -71.41 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: 1.03 Total: 22.10 kcal Atomic # 6 Polarization: -31.04 SS G_CDS: 4.28 Total: -26.76 kcal Atomic # 7 Polarization: -77.14 SS G_CDS: -0.95 Total: -78.09 kcal Atomic # 8 Polarization: -37.56 SS G_CDS: -0.06 Total: -37.62 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.96 kcal Total: -77.74 6.33 -71.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072680014.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.643 kcal (2) G-P(sol) polarization free energy of solvation -77.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds