Wall clock time and date at job start Tue Mar 31 2020 08:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46608 * 2 1 4 4 N 1.46491 * 109.47621 * 120.00137 * 2 1 3 5 5 C 1.46506 * 119.99970 * 300.00586 * 4 2 1 6 6 C 1.50703 * 109.46928 * 269.99565 * 5 4 2 7 7 H 1.08003 * 119.99852 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99913 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00252 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 119.99851 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46881 * 90.00497 * 10 8 6 12 12 H 1.48502 * 109.47076 * 210.00173 * 10 8 6 13 13 H 1.48497 * 109.47060 * 330.00276 * 10 8 6 14 14 C 1.34779 * 120.00292 * 120.00024 * 4 2 1 15 15 O 1.21283 * 119.99998 * 180.02562 * 14 4 2 16 16 C 1.50700 * 119.99838 * 359.97438 * 14 4 2 17 17 O 1.42895 * 109.46892 * 179.97438 * 16 14 4 18 18 C 1.35951 * 116.99758 * 179.97438 * 17 16 14 19 19 C 1.38708 * 120.03040 * 0.28885 * 18 17 16 20 20 C 1.38147 * 119.96935 * 180.25012 * 19 18 17 21 21 C 1.38455 * 120.02958 * 359.46222 * 20 19 18 22 22 F 1.35101 * 119.97206 * 180.29906 * 21 20 19 23 23 C 1.38452 * 120.06193 * 0.28172 * 21 20 19 24 24 C 1.38156 * 120.03063 * 359.97438 * 23 21 20 25 25 H 1.09002 * 109.46883 * 299.99611 * 1 2 3 26 26 H 1.08997 * 109.47420 * 59.99863 * 1 2 3 27 27 H 1.09001 * 109.47041 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47338 * 240.00668 * 2 1 3 29 29 H 1.09003 * 109.46733 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47795 * 299.99901 * 3 2 1 31 31 H 1.09002 * 109.47181 * 60.00571 * 3 2 1 32 32 H 1.09003 * 109.46917 * 29.99280 * 5 4 2 33 33 H 1.08998 * 109.47401 * 149.99544 * 5 4 2 34 34 H 0.96998 * 119.99815 * 180.02562 * 9 8 6 35 35 H 1.09005 * 109.46403 * 60.00348 * 16 14 4 36 36 H 1.08995 * 109.47035 * 300.00415 * 16 14 4 37 37 H 1.07998 * 120.01328 * 0.02562 * 19 18 17 38 38 H 1.08002 * 119.98838 * 179.74746 * 20 19 18 39 39 H 1.07997 * 119.98751 * 179.97438 * 23 21 20 40 40 H 1.07999 * 120.02057 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0185 -0.6906 1.1960 5 6 1.6645 -0.1902 2.5267 6 6 2.7032 0.8018 2.9830 7 1 3.5428 1.0364 2.3454 8 6 2.5812 1.4107 4.2140 9 7 1.5585 1.1255 4.9902 10 14 3.8691 2.6398 4.7798 11 1 3.4769 4.0040 4.3435 12 1 3.9705 2.6039 6.2610 13 1 5.1836 2.2885 4.1850 14 6 2.7934 -1.7864 1.0724 15 8 3.1973 -2.3583 2.0626 16 6 3.1569 -2.3015 -0.2964 17 8 3.9791 -3.4629 -0.1653 18 6 4.3973 -4.0560 -1.3149 19 6 4.0285 -3.5269 -2.5429 20 6 4.4499 -4.1335 -3.7103 21 6 5.2491 -5.2627 -3.6550 22 9 5.6656 -5.8516 -4.7974 23 6 5.6224 -5.7889 -2.4299 24 6 5.1981 -5.1873 -1.2608 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5137 -0.8900 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 0.6905 0.2973 2.4843 33 1 1.6239 -1.0227 3.2291 34 1 1.4725 1.5542 5.8561 35 1 3.7017 -1.5308 -0.8417 36 1 2.2484 -2.5586 -0.8409 37 1 3.4092 -2.6431 -2.5864 38 1 4.1595 -3.7242 -4.6667 39 1 6.2455 -6.6699 -2.3881 40 1 5.4896 -5.5976 -0.3053 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077207055.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:22:03 Heat of formation + Delta-G solvation = -110.792334 kcal Electronic energy + Delta-G solvation = -23468.337155 eV Core-core repulsion = 19776.460522 eV Total energy + Delta-G solvation = -3691.876633 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.80382 -41.50016 -40.45282 -38.22061 -37.48370 -34.94639 -32.47227 -32.32386 -31.23127 -30.02182 -28.29384 -27.88011 -24.98610 -24.05129 -23.19365 -22.66826 -19.87561 -19.54014 -18.62261 -18.39418 -18.12158 -17.37421 -17.34573 -16.87173 -16.50393 -16.19274 -15.63501 -15.56423 -15.10097 -14.86310 -14.64124 -14.34069 -14.28714 -13.98887 -13.93533 -13.40580 -13.34313 -13.30460 -13.14490 -12.82641 -12.74941 -12.51323 -12.23135 -12.10863 -11.94360 -11.87350 -11.68030 -11.53067 -10.63584 -10.60059 -10.18223 -9.49404 -9.14014 -8.19969 -6.31555 0.16428 0.19287 1.36122 1.39420 1.48416 1.61944 1.70166 2.38057 2.56480 2.64874 3.10502 3.32201 3.45031 3.73983 3.80030 3.90843 4.02699 4.08147 4.17865 4.29827 4.33299 4.39915 4.55964 4.83860 4.89913 4.91473 5.00898 5.07323 5.11156 5.12935 5.14235 5.21970 5.23415 5.45323 5.58790 5.63609 5.69438 5.84854 6.09756 6.29194 6.69774 6.77859 7.27675 7.42657 8.87637 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.022891 B = 0.003343 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.909254 B = 8372.840648 C = 8869.040607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.121 3.879 3 C -0.154 4.154 4 N -0.590 5.590 5 C 0.265 3.735 6 C -0.528 4.528 7 H 0.056 0.944 8 C 0.007 3.993 9 N -0.930 5.930 10 Si 0.961 3.039 11 H -0.263 1.263 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.494 3.506 15 O -0.585 6.585 16 C 0.052 3.948 17 O -0.318 6.318 18 C 0.104 3.896 19 C -0.179 4.179 20 C -0.106 4.106 21 C 0.041 3.959 22 F -0.147 7.147 23 C -0.109 4.109 24 C -0.137 4.137 25 H 0.038 0.962 26 H 0.100 0.900 27 H 0.058 0.942 28 H 0.120 0.880 29 H 0.045 0.955 30 H 0.093 0.907 31 H 0.043 0.957 32 H 0.032 0.968 33 H -0.009 1.009 34 H 0.265 0.735 35 H 0.121 0.879 36 H 0.127 0.873 37 H 0.166 0.834 38 H 0.165 0.835 39 H 0.160 0.840 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.059 -6.490 -21.735 22.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.019 3.981 3 C -0.212 4.212 4 N -0.323 5.323 5 C 0.144 3.856 6 C -0.566 4.566 7 H 0.074 0.926 8 C -0.192 4.192 9 N -0.570 5.570 10 Si 0.786 3.214 11 H -0.188 1.188 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.281 3.719 15 O -0.466 6.466 16 C -0.026 4.026 17 O -0.231 6.231 18 C 0.059 3.941 19 C -0.197 4.197 20 C -0.125 4.125 21 C 0.022 3.978 22 F -0.126 7.126 23 C -0.128 4.128 24 C -0.155 4.155 25 H 0.057 0.943 26 H 0.119 0.881 27 H 0.077 0.923 28 H 0.138 0.862 29 H 0.064 0.936 30 H 0.112 0.888 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.009 0.991 34 H 0.074 0.926 35 H 0.138 0.862 36 H 0.145 0.855 37 H 0.183 0.817 38 H 0.182 0.818 39 H 0.178 0.822 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.219 -6.799 -20.894 22.085 hybrid contribution 0.526 0.550 0.951 1.218 sum 2.745 -6.249 -19.944 21.079 Atomic orbital electron populations 1.22145 0.93968 1.02456 1.03056 1.21540 0.95570 0.94288 0.86673 1.22107 1.00779 0.95629 1.02709 1.48308 1.48785 1.26231 1.08927 1.18694 0.95496 0.92624 0.78821 1.21670 1.09069 1.23517 1.02375 0.92613 1.25792 0.97782 0.99119 0.96510 1.70049 1.31343 1.44471 1.11167 0.85512 0.79171 0.79443 0.77284 1.18804 1.21055 1.19902 1.20781 0.78979 0.80950 0.91144 1.90689 1.54624 1.59445 1.41800 1.22693 0.97234 0.88069 0.94611 1.86182 1.65326 1.41933 1.29663 1.19422 0.95594 0.93740 0.85374 1.21412 1.04844 1.03344 0.90148 1.21214 0.96744 0.94118 1.00378 1.17801 1.01963 0.96132 0.81922 1.91475 1.89016 1.83565 1.48576 1.21120 1.00683 1.01277 0.89716 1.20475 0.99902 0.95394 0.99761 0.94305 0.88109 0.92273 0.86248 0.93607 0.88794 0.93778 0.95009 0.99059 0.92605 0.86180 0.85501 0.81682 0.81794 0.82223 0.84143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.83 9.17 71.98 0.66 -3.17 16 2 C 0.12 3.27 3.17 44.99 0.14 3.42 16 3 C -0.15 -4.33 8.47 71.98 0.61 -3.72 16 4 N -0.59 -23.59 2.39 -802.12 -1.91 -25.51 16 5 C 0.26 13.84 4.60 85.63 0.39 14.23 16 6 C -0.53 -29.53 7.83 25.60 0.20 -29.33 16 7 H 0.06 3.08 7.63 -2.91 -0.02 3.06 16 8 C 0.01 0.37 5.46 84.65 0.46 0.83 16 9 N -0.93 -55.95 13.29 21.45 0.28 -55.66 16 10 Si 0.96 44.72 29.54 68.60 2.03 46.75 16 11 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 12 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 13 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 14 C 0.49 20.23 7.75 87.66 0.68 20.91 16 15 O -0.59 -31.45 16.08 16.00 0.26 -31.19 16 16 C 0.05 1.37 3.53 71.24 0.25 1.62 16 17 O -0.32 -9.89 9.67 -73.96 -0.72 -10.61 16 18 C 0.10 2.49 6.69 22.50 0.15 2.64 16 19 C -0.18 -3.07 9.04 22.36 0.20 -2.86 16 20 C -0.11 -1.66 10.02 22.30 0.22 -1.44 16 21 C 0.04 0.76 7.30 22.37 0.16 0.92 16 22 F -0.15 -2.89 17.27 44.97 0.78 -2.11 16 23 C -0.11 -2.00 10.02 22.30 0.22 -1.78 16 24 C -0.14 -3.02 9.99 22.36 0.22 -2.80 16 25 H 0.04 1.19 6.66 -2.39 -0.02 1.17 16 26 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.12 2.08 5.77 -2.39 -0.01 2.07 16 29 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.04 1.59 6.92 -2.39 -0.02 1.57 16 32 H 0.03 1.68 6.43 -2.39 -0.02 1.67 16 33 H -0.01 -0.54 7.42 -2.39 -0.02 -0.56 16 34 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 35 H 0.12 2.39 7.29 -2.38 -0.02 2.38 16 36 H 0.13 2.31 7.32 -2.39 -0.02 2.29 16 37 H 0.17 1.83 6.30 -2.91 -0.02 1.81 16 38 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 39 H 0.16 2.18 8.06 -2.91 -0.02 2.15 16 40 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -77.69 339.35 6.35 -71.34 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: 1.05 Total: 7.51 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: 4.59 Total: -0.52 kcal Atomic # 7 Polarization: -79.54 SS G_CDS: -1.63 Total: -81.17 kcal Atomic # 8 Polarization: -41.34 SS G_CDS: -0.46 Total: -41.80 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.78 Total: -2.11 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -77.69 6.35 -71.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077207055.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.455 kcal (2) G-P(sol) polarization free energy of solvation -77.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds