Wall clock time and date at job start Tue Mar 31 2020 08:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47228 * 2 1 4 4 N 1.46492 * 109.47010 * 176.96313 * 3 2 1 5 5 C 1.36941 * 120.00288 * 95.17221 * 4 3 2 6 6 H 1.08004 * 119.99798 * 42.17220 * 5 4 3 7 7 C 1.38803 * 120.00596 * 221.89376 * 5 4 3 8 8 N 1.31618 * 120.00512 * 210.96375 * 7 5 4 9 9 Si 1.86807 * 119.99544 * 30.95857 * 7 5 4 10 10 H 1.48493 * 109.47244 * 55.32115 * 9 7 5 11 11 H 1.48503 * 109.46830 * 175.31810 * 9 7 5 12 12 H 1.48499 * 109.47317 * 295.31868 * 9 7 5 13 13 C 1.46502 * 120.00360 * 275.17105 * 4 3 2 14 14 C 1.50698 * 109.47309 * 270.49354 * 13 4 3 15 15 C 1.38477 * 119.82109 * 269.72146 * 14 13 4 16 16 C 1.37835 * 120.22560 * 179.76381 * 15 14 13 17 17 C 1.39721 * 119.87199 * 0.48535 * 16 15 14 18 18 C 1.47560 * 120.17431 * 179.74496 * 17 16 15 19 19 O 1.21488 * 120.00159 * 180.02562 * 18 17 16 20 20 O 1.34728 * 120.00111 * 0.02562 * 18 17 16 21 21 C 1.45199 * 117.00311 * 179.97438 * 20 18 17 22 22 C 1.39880 * 119.65248 * 359.77040 * 17 16 15 23 23 F 1.35104 * 120.11363 * 179.97438 * 22 17 16 24 24 C 1.38204 * 119.82944 * 89.99679 * 14 13 4 25 25 H 1.08998 * 109.47507 * 59.99560 * 1 2 3 26 26 H 1.09000 * 109.47267 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46760 * 300.00023 * 1 2 3 28 28 H 1.09002 * 109.46760 * 239.99977 * 2 1 3 29 29 H 1.08997 * 109.46826 * 120.00126 * 2 1 3 30 30 H 1.09006 * 109.47166 * 56.96367 * 3 2 1 31 31 H 1.09000 * 109.47002 * 296.96387 * 3 2 1 32 32 H 0.97000 * 119.99938 * 179.97438 * 8 7 5 33 33 H 1.08998 * 109.46809 * 30.48728 * 13 4 3 34 34 H 1.08998 * 109.47049 * 150.48673 * 13 4 3 35 35 H 1.08000 * 119.89033 * 0.02562 * 15 14 13 36 36 H 1.07999 * 120.06454 * 180.22906 * 16 15 14 37 37 H 1.09000 * 109.46854 * 60.00454 * 21 20 18 38 38 H 1.09007 * 109.47141 * 180.02562 * 21 20 18 39 39 H 1.08998 * 109.47066 * 299.99878 * 21 20 18 40 40 H 1.07998 * 119.93644 * 359.97280 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5031 1.4430 0.0732 5 6 4.2461 1.5294 -1.0739 6 1 3.9542 2.2146 -1.8561 7 6 5.3775 0.7404 -1.2291 8 7 6.3934 1.1796 -1.9414 9 14 5.4583 -0.9446 -0.4269 10 1 4.2913 -1.7550 -0.8587 11 1 6.7128 -1.6271 -0.8342 12 1 5.4352 -0.7914 1.0500 13 6 4.1716 1.3513 1.3735 14 6 4.3843 2.7364 1.9279 15 6 5.5529 3.4214 1.6403 16 6 5.7539 4.6905 2.1389 17 6 4.7795 5.2837 2.9457 18 6 4.9903 6.6399 3.4877 19 8 4.1411 7.1525 4.1892 20 8 6.1244 7.3097 3.2046 21 6 6.2638 8.6393 3.7712 22 6 3.6033 4.5850 3.2373 23 9 2.6551 5.1495 4.0168 24 6 3.4145 3.3141 2.7253 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6329 1.9718 0.8616 31 1 1.7218 1.9403 -0.9160 32 1 7.1842 0.6283 -2.0495 33 1 3.5515 0.7761 2.0610 34 1 5.1352 0.8564 1.2526 35 1 6.3076 2.9613 1.0196 36 1 6.6647 5.2238 1.9099 37 1 6.2243 8.5767 4.8587 38 1 7.2192 9.0661 3.4659 39 1 5.4523 9.2733 3.4141 40 1 2.5073 2.7723 2.9487 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089116706.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:44 Heat of formation + Delta-G solvation = -88.678971 kcal Electronic energy + Delta-G solvation = -23855.580353 eV Core-core repulsion = 20164.662627 eV Total energy + Delta-G solvation = -3690.917726 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -48.63969 -40.31930 -38.70819 -36.45599 -36.18481 -33.15707 -32.17531 -30.80284 -30.19898 -28.02774 -26.47020 -25.79027 -23.05819 -22.50604 -21.99591 -20.76637 -19.95379 -17.91229 -17.38509 -16.87209 -16.42910 -16.36529 -15.71368 -15.29530 -15.15316 -14.58410 -14.53701 -14.23553 -13.87383 -13.41148 -13.29978 -13.16328 -12.90108 -12.68945 -12.55287 -12.20508 -11.87274 -11.82666 -11.51515 -11.31441 -11.05404 -10.81379 -10.79280 -10.77739 -10.66726 -10.33650 -10.11471 -9.96932 -9.72499 -8.74442 -8.55293 -8.38778 -6.96545 -6.23810 -3.58392 0.83272 1.52769 2.67459 2.70458 3.22165 3.38000 3.41948 3.90162 4.37917 4.39706 4.76461 4.92366 4.98027 5.03468 5.10341 5.14374 5.29530 5.40190 5.48904 5.53659 5.62440 5.64572 5.88917 5.95067 6.02830 6.08355 6.18728 6.30038 6.34727 6.38883 6.40222 6.44403 6.55561 6.60364 6.79372 6.96498 6.98567 7.15354 7.80554 7.86309 8.28063 8.81490 9.51911 9.96039 10.90655 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.017000 B = 0.004733 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.697474 B = 5914.892588 C = 7080.494853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.147 4.147 3 C 0.147 3.853 4 N -0.589 5.589 5 C -0.278 4.278 6 H 0.075 0.925 7 C 0.052 3.948 8 N -0.875 5.875 9 Si 0.856 3.144 10 H -0.275 1.275 11 H -0.298 1.298 12 H -0.269 1.269 13 C 0.157 3.843 14 C -0.011 4.011 15 C -0.118 4.118 16 C -0.036 4.036 17 C -0.190 4.190 18 C 0.513 3.487 19 O -0.506 6.506 20 O -0.354 6.354 21 C 0.038 3.962 22 C 0.157 3.843 23 F -0.125 7.125 24 C -0.169 4.169 25 H 0.051 0.949 26 H 0.044 0.956 27 H 0.047 0.953 28 H 0.063 0.937 29 H 0.049 0.951 30 H 0.037 0.963 31 H 0.056 0.944 32 H 0.267 0.733 33 H 0.053 0.947 34 H 0.080 0.920 35 H 0.143 0.857 36 H 0.141 0.859 37 H 0.061 0.939 38 H 0.101 0.899 39 H 0.062 0.938 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.957 5.652 9.174 10.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.187 4.187 3 C 0.021 3.979 4 N -0.308 5.308 5 C -0.406 4.406 6 H 0.093 0.907 7 C -0.152 4.152 8 N -0.512 5.512 9 Si 0.684 3.316 10 H -0.201 1.201 11 H -0.225 1.225 12 H -0.196 1.196 13 C 0.032 3.968 14 C -0.015 4.015 15 C -0.136 4.136 16 C -0.054 4.054 17 C -0.193 4.193 18 C 0.358 3.642 19 O -0.396 6.396 20 O -0.271 6.271 21 C -0.056 4.056 22 C 0.137 3.863 23 F -0.104 7.104 24 C -0.189 4.189 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.098 0.902 35 H 0.161 0.839 36 H 0.158 0.842 37 H 0.080 0.920 38 H 0.119 0.881 39 H 0.080 0.920 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.061 5.819 9.274 11.141 hybrid contribution -0.078 -0.659 0.501 0.832 sum -2.139 5.160 9.775 11.258 Atomic orbital electron populations 1.21725 0.96988 1.00634 1.01166 1.22147 0.94121 1.00586 1.01834 1.21049 0.83773 0.93527 0.99524 1.44103 1.00732 1.84877 1.01126 1.18672 1.07137 1.18889 0.95870 0.90716 1.25554 0.95823 0.97533 0.96253 1.70009 1.03782 1.36159 1.41253 0.87517 0.76846 0.87589 0.79695 1.20099 1.22524 1.19562 1.20687 0.99196 0.89351 0.87564 1.21244 0.91185 1.00046 0.89020 1.21265 0.98594 0.94152 0.99637 1.21326 0.97222 0.94537 0.92322 1.18930 0.97922 0.93215 1.09222 1.21029 0.79444 0.85949 0.77741 1.90855 1.43730 1.68923 1.36047 1.86556 1.40260 1.30673 1.69617 1.23240 1.02974 0.80409 0.98968 1.17638 0.85325 0.91691 0.91656 1.91541 1.62318 1.84846 1.71664 1.20969 1.01882 0.93833 1.02180 0.93011 0.93659 0.93362 0.91779 0.93181 0.94452 0.92520 0.92353 0.92883 0.90166 0.83880 0.84160 0.92005 0.88050 0.91952 0.84595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.91 37.16 0.37 -1.62 16 2 C -0.15 -2.48 6.26 -26.73 -0.17 -2.65 16 3 C 0.15 2.69 5.67 -4.05 -0.02 2.66 16 4 N -0.59 -12.53 1.94 -174.62 -0.34 -12.87 16 5 C -0.28 -6.99 9.74 -15.06 -0.15 -7.14 16 6 H 0.08 2.09 8.06 -52.48 -0.42 1.67 16 7 C 0.05 1.34 5.07 -17.43 -0.09 1.25 16 8 N -0.87 -24.03 13.97 55.49 0.78 -23.26 16 9 Si 0.86 19.74 26.69 -169.99 -4.54 15.20 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.30 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.27 -5.78 5.68 56.52 0.32 -5.46 16 13 C 0.16 3.04 4.66 -5.19 -0.02 3.02 16 14 C -0.01 -0.20 5.47 -104.55 -0.57 -0.77 16 15 C -0.12 -2.07 9.67 -39.64 -0.38 -2.45 16 16 C -0.04 -0.57 9.62 -39.17 -0.38 -0.94 16 17 C -0.19 -3.19 5.88 -104.93 -0.62 -3.81 16 18 C 0.51 8.48 7.89 34.53 0.27 8.75 16 19 O -0.51 -9.41 15.13 -19.26 -0.29 -9.70 16 20 O -0.35 -4.94 9.82 -40.57 -0.40 -5.34 16 21 C 0.04 0.38 10.56 101.05 1.07 1.45 16 22 C 0.16 2.70 7.29 -38.94 -0.28 2.42 16 23 F -0.13 -2.25 15.55 2.25 0.04 -2.22 16 24 C -0.17 -2.79 9.66 -39.57 -0.38 -3.17 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.04 0.62 8.11 -51.93 -0.42 0.20 16 31 H 0.06 1.07 8.00 -51.93 -0.42 0.65 16 32 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.05 0.92 8.02 -51.93 -0.42 0.50 16 34 H 0.08 1.67 4.12 -51.93 -0.21 1.46 16 35 H 0.14 2.67 8.06 -52.49 -0.42 2.25 16 36 H 0.14 1.92 7.61 -52.49 -0.40 1.52 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.14 2.00 8.06 -52.49 -0.42 1.57 16 LS Contribution 343.81 15.07 5.18 5.18 Total: -1.00 -28.64 343.81 -6.66 -35.30 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -5.73 Total: 0.70 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: -1.36 Total: -3.00 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: 0.44 Total: -36.12 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -0.69 Total: -15.04 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.04 Total: -2.22 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -4.54 Total: 15.20 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -28.64 -6.66 -35.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089116706.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.377 kcal (2) G-P(sol) polarization free energy of solvation -28.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds