Wall clock time and date at job start Tue Mar 31 2020 08:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47228 * 2 1 4 4 N 1.46492 * 109.47010 * 176.96313 * 3 2 1 5 5 C 1.36941 * 120.00288 * 95.17221 * 4 3 2 6 6 H 1.08004 * 119.99798 * 42.17220 * 5 4 3 7 7 C 1.38803 * 120.00596 * 221.89376 * 5 4 3 8 8 N 1.31618 * 120.00512 * 210.96375 * 7 5 4 9 9 Si 1.86807 * 119.99544 * 30.95857 * 7 5 4 10 10 H 1.48493 * 109.47244 * 55.32115 * 9 7 5 11 11 H 1.48503 * 109.46830 * 175.31810 * 9 7 5 12 12 H 1.48499 * 109.47317 * 295.31868 * 9 7 5 13 13 C 1.46502 * 120.00360 * 275.17105 * 4 3 2 14 14 C 1.50698 * 109.47309 * 270.49354 * 13 4 3 15 15 C 1.38477 * 119.82109 * 269.72146 * 14 13 4 16 16 C 1.37835 * 120.22560 * 179.76381 * 15 14 13 17 17 C 1.39721 * 119.87199 * 0.48535 * 16 15 14 18 18 C 1.47560 * 120.17431 * 179.74496 * 17 16 15 19 19 O 1.21488 * 120.00159 * 180.02562 * 18 17 16 20 20 O 1.34728 * 120.00111 * 0.02562 * 18 17 16 21 21 C 1.45199 * 117.00311 * 179.97438 * 20 18 17 22 22 C 1.39880 * 119.65248 * 359.77040 * 17 16 15 23 23 F 1.35104 * 120.11363 * 179.97438 * 22 17 16 24 24 C 1.38204 * 119.82944 * 89.99679 * 14 13 4 25 25 H 1.08998 * 109.47507 * 59.99560 * 1 2 3 26 26 H 1.09000 * 109.47267 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46760 * 300.00023 * 1 2 3 28 28 H 1.09002 * 109.46760 * 239.99977 * 2 1 3 29 29 H 1.08997 * 109.46826 * 120.00126 * 2 1 3 30 30 H 1.09006 * 109.47166 * 56.96367 * 3 2 1 31 31 H 1.09000 * 109.47002 * 296.96387 * 3 2 1 32 32 H 0.97000 * 119.99938 * 179.97438 * 8 7 5 33 33 H 1.08998 * 109.46809 * 30.48728 * 13 4 3 34 34 H 1.08998 * 109.47049 * 150.48673 * 13 4 3 35 35 H 1.08000 * 119.89033 * 0.02562 * 15 14 13 36 36 H 1.07999 * 120.06454 * 180.22906 * 16 15 14 37 37 H 1.09000 * 109.46854 * 60.00454 * 21 20 18 38 38 H 1.09007 * 109.47141 * 180.02562 * 21 20 18 39 39 H 1.08998 * 109.47066 * 299.99878 * 21 20 18 40 40 H 1.07998 * 119.93644 * 359.97280 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5031 1.4430 0.0732 5 6 4.2461 1.5294 -1.0739 6 1 3.9542 2.2146 -1.8561 7 6 5.3775 0.7404 -1.2291 8 7 6.3934 1.1796 -1.9414 9 14 5.4583 -0.9446 -0.4269 10 1 4.2913 -1.7550 -0.8587 11 1 6.7128 -1.6271 -0.8342 12 1 5.4352 -0.7914 1.0500 13 6 4.1716 1.3513 1.3735 14 6 4.3843 2.7364 1.9279 15 6 5.5529 3.4214 1.6403 16 6 5.7539 4.6905 2.1389 17 6 4.7795 5.2837 2.9457 18 6 4.9903 6.6399 3.4877 19 8 4.1411 7.1525 4.1892 20 8 6.1244 7.3097 3.2046 21 6 6.2638 8.6393 3.7712 22 6 3.6033 4.5850 3.2373 23 9 2.6551 5.1495 4.0168 24 6 3.4145 3.3141 2.7253 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6329 1.9718 0.8616 31 1 1.7218 1.9403 -0.9160 32 1 7.1842 0.6283 -2.0495 33 1 3.5515 0.7761 2.0610 34 1 5.1352 0.8564 1.2526 35 1 6.3076 2.9613 1.0196 36 1 6.6647 5.2238 1.9099 37 1 6.2243 8.5767 4.8587 38 1 7.2192 9.0661 3.4659 39 1 5.4523 9.2733 3.4141 40 1 2.5073 2.7723 2.9487 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089116706.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:43 Heat of formation + Delta-G solvation = -102.539933 kcal Electronic energy + Delta-G solvation = -23856.181409 eV Core-core repulsion = 20164.662627 eV Total energy + Delta-G solvation = -3691.518782 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.01448 -41.56190 -40.08286 -37.90953 -37.49528 -34.63808 -33.83947 -32.31683 -31.56011 -29.11685 -27.72243 -27.43144 -24.49641 -23.82157 -23.44709 -22.07016 -21.44625 -19.21855 -18.98681 -18.24416 -17.87000 -17.54345 -17.10223 -16.90641 -16.59255 -16.09559 -15.82185 -15.63891 -15.24882 -14.83400 -14.55981 -14.41034 -14.38495 -14.23338 -14.03524 -13.43402 -13.18335 -13.10998 -12.83914 -12.77074 -12.43915 -12.33791 -12.28920 -12.12987 -11.91497 -11.85765 -11.63165 -11.45445 -11.35007 -10.48321 -10.08038 -9.77374 -8.71143 -8.22195 -5.55256 -0.51070 0.18884 1.35408 1.39350 1.51105 1.55391 1.58407 2.45412 2.53979 3.04228 3.08252 3.50509 3.52926 3.73329 3.89831 4.14912 4.25182 4.28096 4.28851 4.32006 4.41101 4.53620 4.64633 4.67366 4.72853 4.81778 4.88650 4.94628 4.98482 5.04344 5.11306 5.20077 5.24839 5.29042 5.43728 5.58853 5.60750 5.77675 5.96440 6.27662 6.57035 7.02318 7.63634 8.09670 8.96712 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.017000 B = 0.004733 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.697474 B = 5914.892588 C = 7080.494853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.141 4.141 3 C 0.144 3.856 4 N -0.599 5.599 5 C -0.267 4.267 6 H 0.032 0.968 7 C 0.011 3.989 8 N -0.922 5.922 9 Si 0.908 3.092 10 H -0.280 1.280 11 H -0.309 1.309 12 H -0.241 1.241 13 C 0.157 3.843 14 C -0.020 4.020 15 C -0.128 4.128 16 C -0.024 4.024 17 C -0.193 4.193 18 C 0.515 3.485 19 O -0.530 6.530 20 O -0.354 6.354 21 C 0.029 3.971 22 C 0.147 3.853 23 F -0.130 7.130 24 C -0.156 4.156 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.035 0.965 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.042 0.958 32 H 0.265 0.735 33 H 0.081 0.919 34 H 0.063 0.937 35 H 0.128 0.872 36 H 0.162 0.838 37 H 0.065 0.935 38 H 0.137 0.863 39 H 0.062 0.938 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.766 5.760 11.246 12.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.181 4.181 3 C 0.020 3.980 4 N -0.320 5.320 5 C -0.396 4.396 6 H 0.050 0.950 7 C -0.189 4.189 8 N -0.563 5.563 9 Si 0.735 3.265 10 H -0.206 1.206 11 H -0.236 1.236 12 H -0.166 1.166 13 C 0.033 3.967 14 C -0.023 4.023 15 C -0.147 4.147 16 C -0.042 4.042 17 C -0.195 4.195 18 C 0.362 3.638 19 O -0.422 6.422 20 O -0.270 6.270 21 C -0.064 4.064 22 C 0.127 3.873 23 F -0.108 7.108 24 C -0.175 4.175 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.146 0.854 36 H 0.180 0.820 37 H 0.084 0.916 38 H 0.155 0.845 39 H 0.081 0.919 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -2.885 5.939 11.384 13.160 hybrid contribution 0.178 -0.497 -0.096 0.536 sum -2.707 5.442 11.288 12.820 Atomic orbital electron populations 1.21665 0.94209 1.01837 1.02120 1.22041 0.96543 0.98873 1.00657 1.21151 0.82156 0.94821 0.99907 1.44155 1.01748 1.85381 1.00725 1.18399 1.07147 1.17473 0.96623 0.95013 1.25963 0.95527 1.00023 0.97363 1.70103 1.04613 1.37291 1.44251 0.86632 0.75847 0.83281 0.80704 1.20560 1.23630 1.16557 1.20656 0.98718 0.90389 0.86982 1.21113 0.91837 0.99300 0.90074 1.21240 0.98560 0.94975 0.99895 1.21438 0.97726 0.93789 0.91248 1.19133 0.97891 0.93622 1.08887 1.20982 0.79795 0.85868 0.77203 1.90843 1.44699 1.69467 1.37178 1.86543 1.38729 1.32296 1.69476 1.23632 1.04963 0.78478 0.99310 1.17789 0.85464 0.92110 0.91897 1.91531 1.62491 1.84964 1.71825 1.21062 1.02044 0.93488 1.00951 0.92883 0.92367 0.91608 0.94581 0.92702 0.92017 0.93953 0.92620 0.90088 0.91876 0.85448 0.82046 0.91594 0.84459 0.91913 0.82304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 9.91 71.98 0.71 -2.69 16 2 C -0.14 -4.50 6.26 30.59 0.19 -4.31 16 3 C 0.14 5.08 5.67 86.38 0.49 5.57 16 4 N -0.60 -25.13 1.94 -706.37 -1.37 -26.50 16 5 C -0.27 -13.79 9.74 84.03 0.82 -12.98 16 6 H 0.03 1.89 8.06 -2.91 -0.02 1.87 16 7 C 0.01 0.59 5.07 84.86 0.43 1.02 16 8 N -0.92 -52.50 13.97 21.65 0.30 -52.20 16 9 Si 0.91 40.93 26.69 68.60 1.83 42.76 16 10 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.31 -14.36 7.11 99.48 0.71 -13.65 16 12 H -0.24 -9.65 5.68 99.48 0.56 -9.08 16 13 C 0.16 5.80 4.66 85.63 0.40 6.20 16 14 C -0.02 -0.68 5.47 -19.82 -0.11 -0.78 16 15 C -0.13 -4.41 9.67 22.23 0.22 -4.19 16 16 C -0.02 -0.72 9.62 22.53 0.22 -0.51 16 17 C -0.19 -6.15 5.88 -20.06 -0.12 -6.27 16 18 C 0.51 16.19 7.89 70.28 0.55 16.75 16 19 O -0.53 -19.01 15.13 19.87 0.30 -18.70 16 20 O -0.35 -9.12 9.82 -56.38 -0.55 -9.67 16 21 C 0.03 0.51 10.56 113.37 1.20 1.71 16 22 C 0.15 4.78 7.29 22.68 0.17 4.95 16 23 F -0.13 -4.43 15.55 44.97 0.70 -3.73 16 24 C -0.16 -4.76 9.66 22.28 0.22 -4.55 16 25 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.06 1.87 8.11 -2.38 -0.02 1.85 16 31 H 0.04 1.59 8.00 -2.39 -0.02 1.57 16 32 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 33 H 0.08 2.52 8.02 -2.39 -0.02 2.50 16 34 H 0.06 2.54 4.12 -2.39 -0.01 2.53 16 35 H 0.13 4.83 8.06 -2.91 -0.02 4.81 16 36 H 0.16 4.13 7.61 -2.91 -0.02 4.11 16 37 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.14 1.42 8.14 -2.38 -0.02 1.40 16 39 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.16 4.07 8.06 -2.91 -0.02 4.04 16 Total: -1.00 -63.01 343.81 7.48 -55.53 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: 0.89 Total: 12.60 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: 5.38 Total: -0.09 kcal Atomic # 7 Polarization: -77.63 SS G_CDS: -1.07 Total: -78.70 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: -0.25 Total: -28.37 kcal Atomic # 9 Polarization: -4.43 SS G_CDS: 0.70 Total: -3.73 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 1.83 Total: 42.76 kcal Total: -63.01 7.48 -55.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089116706.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.007 kcal (2) G-P(sol) polarization free energy of solvation -63.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds