Wall clock time and date at job start Tue Mar 31 2020 07:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47214 * 2 1 4 4 C 1.50696 * 109.47412 * 179.97438 * 3 2 1 5 5 C 1.37480 * 122.44319 * 265.02640 * 4 3 2 6 6 C 1.36655 * 113.29259 * 179.97438 * 5 4 3 7 7 C 1.46579 * 125.45877 * 179.97438 * 6 5 4 8 8 O 1.21706 * 120.00024 * 352.14159 * 7 6 5 9 9 N 1.34774 * 119.99969 * 172.13918 * 7 6 5 10 10 C 1.46506 * 119.99911 * 181.94807 * 9 7 6 11 11 C 1.53005 * 109.46950 * 85.09090 * 10 9 7 12 12 C 1.46491 * 120.00337 * 1.95226 * 9 7 6 13 13 C 1.50702 * 109.47503 * 82.21942 * 12 9 7 14 14 H 1.08003 * 119.99393 * 0.02562 * 13 12 9 15 15 C 1.37874 * 120.00350 * 180.02562 * 13 12 9 16 16 N 1.31511 * 119.99924 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99898 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.46906 * 90.00471 * 17 15 13 19 19 H 1.48499 * 109.47298 * 210.00158 * 17 15 13 20 20 H 1.48498 * 109.47290 * 330.00445 * 17 15 13 21 21 S 1.75838 * 109.08154 * 359.97438 * 6 5 4 22 22 C 1.33816 * 122.45186 * 84.73141 * 4 3 2 23 23 C 1.50697 * 124.52066 * 0.02562 * 22 4 3 24 24 H 1.09002 * 109.47106 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47387 * 300.00693 * 1 2 3 26 26 H 1.09002 * 109.46708 * 60.00465 * 1 2 3 27 27 H 1.08998 * 109.47771 * 239.99688 * 2 1 3 28 28 H 1.09002 * 109.46708 * 119.99535 * 2 1 3 29 29 H 1.08998 * 109.47006 * 59.99220 * 3 2 1 30 30 H 1.09000 * 109.47141 * 299.99892 * 3 2 1 31 31 H 1.07995 * 123.35313 * 0.02562 * 5 4 3 32 32 H 1.08994 * 109.47104 * 205.09158 * 10 9 7 33 33 H 1.09005 * 109.46959 * 325.09723 * 10 9 7 34 34 H 1.08999 * 109.46766 * 180.02562 * 11 10 9 35 35 H 1.08995 * 109.46826 * 300.00245 * 11 10 9 36 36 H 1.08998 * 109.46777 * 59.99657 * 11 10 9 37 37 H 1.08998 * 109.47642 * 202.22231 * 12 9 7 38 38 H 1.09004 * 109.47251 * 322.22198 * 12 9 7 39 39 H 0.97007 * 119.99403 * 179.97438 * 16 15 13 40 40 H 1.09008 * 109.46680 * 90.00080 * 23 22 4 41 41 H 1.09002 * 109.47075 * 209.99927 * 23 22 4 42 42 H 1.08995 * 109.47174 * 330.00674 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 6 4.2840 1.5433 1.1568 6 6 5.6333 1.5240 0.9409 7 6 6.6622 1.6150 1.9809 8 8 6.3458 1.8607 3.1301 9 7 7.9587 1.4266 1.6645 10 6 8.9827 1.4753 2.7111 11 6 9.0990 0.1017 3.3750 12 6 8.3440 1.1731 0.2740 13 6 8.4414 2.4818 -0.4669 14 1 8.2372 3.4096 0.0469 15 6 8.7913 2.4947 -1.8004 16 7 8.8768 3.6369 -2.4467 17 14 9.1453 0.8900 -2.6887 18 1 7.8886 0.3637 -3.2794 19 1 10.1370 1.1298 -3.7677 20 1 9.6916 -0.0991 -1.7252 21 16 5.9373 1.3723 -0.7843 22 6 4.2655 1.3387 -1.1235 23 6 3.6766 1.2117 -2.5048 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8935 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.6766 1.9564 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 3.8409 1.6285 2.1379 32 1 9.9411 1.7476 2.2692 33 1 8.7031 2.2176 3.4587 34 1 9.8606 0.1381 4.1540 35 1 8.1405 -0.1706 3.8168 36 1 9.3785 -0.6406 2.6275 37 1 9.3105 0.6697 0.2508 38 1 7.5937 0.5414 -0.2016 39 1 9.1233 3.6459 -3.3849 40 1 3.5351 2.2045 -2.9321 41 1 4.3537 0.6372 -3.1370 42 1 2.7152 0.7018 -2.4444 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103208606.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:23 Heat of formation + Delta-G solvation = -23.560419 kcal Electronic energy + Delta-G solvation = -22226.463431 eV Core-core repulsion = 19104.582633 eV Total energy + Delta-G solvation = -3121.880798 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.23331 -38.06933 -35.36140 -33.92217 -33.00674 -31.69041 -30.59588 -28.26455 -27.69356 -25.53325 -23.42536 -22.83794 -22.12246 -21.16002 -18.92308 -17.65032 -17.27801 -17.16243 -15.81352 -15.34627 -14.74849 -14.58593 -14.40502 -13.97275 -13.68589 -13.31620 -13.29401 -13.07023 -12.75504 -12.67475 -12.50195 -12.21991 -12.07360 -11.82646 -11.77411 -11.46156 -11.42055 -11.10067 -11.02683 -10.83424 -10.76339 -10.52519 -10.47980 -10.42472 -9.83425 -9.29932 -9.23368 -8.96864 -8.06062 -7.69716 -7.51032 -6.40795 -4.36898 1.31240 2.41507 2.90304 2.98519 3.04849 3.12482 3.16586 3.77469 3.96937 4.08751 4.90031 5.06316 5.11092 5.22666 5.28728 5.44075 5.52606 5.62958 5.68872 5.72699 5.77027 5.84304 5.86398 5.89072 5.94910 6.08884 6.11299 6.13250 6.19545 6.21546 6.30455 6.32908 6.40907 6.45810 6.55967 6.63452 6.99385 7.14674 7.15886 7.25543 7.99383 8.22643 8.66003 8.88282 9.14546 10.70356 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.013522 B = 0.006703 C = 0.004941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.224044 B = 4176.421624 C = 5665.016920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C -0.054 4.054 4 C -0.136 4.136 5 C -0.069 4.069 6 C -0.283 4.283 7 C 0.594 3.406 8 O -0.563 6.563 9 N -0.592 5.592 10 C 0.118 3.882 11 C -0.166 4.166 12 C 0.198 3.802 13 C -0.536 4.536 14 H 0.087 0.913 15 C 0.091 3.909 16 N -0.872 5.872 17 Si 0.845 3.155 18 H -0.262 1.262 19 H -0.275 1.275 20 H -0.258 1.258 21 S 0.356 5.644 22 C -0.283 4.283 23 C -0.077 4.077 24 H 0.050 0.950 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.135 0.865 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.053 0.947 37 H 0.049 0.951 38 H 0.031 0.969 39 H 0.271 0.729 40 H 0.068 0.932 41 H 0.060 0.940 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.883 -7.796 1.297 11.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.094 4.094 4 C -0.149 4.149 5 C -0.104 4.104 6 C -0.404 4.404 7 C 0.384 3.616 8 O -0.445 6.445 9 N -0.322 5.322 10 C -0.005 4.005 11 C -0.224 4.224 12 C 0.074 3.926 13 C -0.578 4.578 14 H 0.105 0.895 15 C -0.116 4.116 16 N -0.507 5.507 17 Si 0.670 3.330 18 H -0.187 1.187 19 H -0.200 1.200 20 H -0.182 1.182 21 S 0.634 5.366 22 C -0.402 4.402 23 C -0.135 4.135 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.153 0.847 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.047 0.953 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.705 -7.674 0.743 10.217 hybrid contribution -1.029 -0.504 0.143 1.155 sum -7.734 -8.178 0.887 11.291 Atomic orbital electron populations 1.21792 0.96254 1.01218 1.01604 1.21510 0.94909 0.97022 1.02206 1.20213 0.90857 0.96428 1.01875 1.18290 0.96084 1.08847 0.91635 1.20229 0.91093 1.00273 0.98779 1.24462 0.97433 1.19974 0.98578 1.16981 0.81754 0.76197 0.86712 1.90702 1.81890 1.51315 1.20567 1.47762 1.05522 1.69626 1.09332 1.21284 0.91535 0.97198 0.90440 1.22144 1.01875 0.97973 1.00401 1.20081 0.96167 0.97978 0.78405 1.21399 1.47896 0.92912 0.95562 0.89492 1.24795 0.93913 0.95999 0.96928 1.69864 1.45171 1.25099 1.10566 0.87255 0.80022 0.84724 0.81013 1.18672 1.20043 1.18231 1.85345 0.94279 1.60081 0.96893 1.25398 1.06372 1.09125 0.99311 1.20232 1.00146 1.01946 0.91207 0.93069 0.92845 0.92941 0.92082 0.92010 0.91762 0.91739 0.84702 0.90129 0.90676 0.92089 0.92478 0.92798 0.93285 0.95252 0.91887 0.91382 0.92053 0.91524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.91 37.16 0.37 -1.11 16 2 C -0.12 -1.42 5.85 -26.73 -0.16 -1.58 16 3 C -0.05 -0.75 4.82 -27.88 -0.13 -0.88 16 4 C -0.14 -2.35 5.04 -106.45 -0.54 -2.89 16 5 C -0.07 -1.33 9.79 -40.43 -0.40 -1.73 16 6 C -0.28 -6.03 6.23 -36.79 -0.23 -6.26 16 7 C 0.59 13.37 7.53 -12.90 -0.10 13.28 16 8 O -0.56 -13.48 16.50 5.18 0.09 -13.40 16 9 N -0.59 -12.52 2.49 -176.64 -0.44 -12.96 16 10 C 0.12 2.12 6.06 -4.04 -0.02 2.10 16 11 C -0.17 -2.50 10.21 37.16 0.38 -2.12 16 12 C 0.20 4.30 3.79 -5.20 -0.02 4.28 16 13 C -0.54 -13.40 7.51 -34.44 -0.26 -13.66 16 14 H 0.09 2.49 8.06 -52.48 -0.42 2.07 16 15 C 0.09 2.28 5.08 -17.82 -0.09 2.19 16 16 N -0.87 -23.72 13.96 55.43 0.77 -22.95 16 17 Si 0.84 18.26 26.79 -169.99 -4.55 13.70 16 18 H -0.26 -5.40 7.11 56.52 0.40 -4.99 16 19 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 20 H -0.26 -5.28 6.54 56.52 0.37 -4.91 16 21 S 0.36 7.31 15.15 -107.50 -1.63 5.68 16 22 C -0.28 -5.05 6.28 -35.86 -0.23 -5.27 16 23 C -0.08 -1.13 9.71 36.00 0.35 -0.78 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.74 7.21 -51.93 -0.37 0.37 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.84 8.10 -51.93 -0.42 0.42 16 30 H 0.06 0.83 7.48 -51.93 -0.39 0.44 16 31 H 0.14 2.47 8.06 -52.49 -0.42 2.05 16 32 H 0.08 1.35 8.03 -51.93 -0.42 0.94 16 33 H 0.07 1.38 7.55 -51.93 -0.39 0.99 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.05 1.02 7.07 -51.93 -0.37 0.66 16 38 H 0.03 0.65 3.95 -22.36 -0.09 0.56 16 39 H 0.27 6.89 8.31 -40.82 -0.34 6.56 16 40 H 0.07 0.96 8.14 -51.92 -0.42 0.54 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.07 0.83 6.37 -51.93 -0.33 0.50 16 LS Contribution 346.89 15.07 5.23 5.23 Total: -1.00 -28.15 346.89 -8.20 -36.35 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -6.60 Total: 2.78 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: -1.07 Total: -14.43 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: 0.33 Total: -35.91 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: 0.09 Total: -13.40 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -4.55 Total: 13.70 kcal Atomic # 16 Polarization: 7.31 SS G_CDS: -1.63 Total: 5.68 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.15 -8.20 -36.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103208606.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.794 kcal (2) G-P(sol) polarization free energy of solvation -28.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds