Wall clock time and date at job start Tue Mar 31 2020 07:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46887 * 2 1 4 4 C 1.50702 * 109.46852 * 179.97438 * 3 2 1 5 5 C 1.37476 * 122.45282 * 264.97457 * 4 3 2 6 6 C 1.36639 * 113.30028 * 180.02562 * 5 4 3 7 7 C 1.46586 * 125.46005 * 180.26924 * 6 5 4 8 8 O 1.21699 * 119.99825 * 351.34024 * 7 6 5 9 9 N 1.34773 * 119.99949 * 171.34607 * 7 6 5 10 10 C 1.46501 * 120.00413 * 0.03358 * 9 7 6 11 11 C 1.46507 * 119.99630 * 180.02562 * 9 7 6 12 12 H 1.08994 * 109.47086 * 359.97438 * 11 9 7 13 13 C 1.52999 * 109.47275 * 119.99910 * 11 9 7 14 14 C 1.50704 * 109.46975 * 239.99619 * 11 9 7 15 15 H 1.07995 * 119.99931 * 359.97438 * 14 11 9 16 16 C 1.37870 * 119.99964 * 180.02562 * 14 11 9 17 17 N 1.31516 * 120.00184 * 359.97438 * 16 14 11 18 18 Si 1.86799 * 120.00076 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.47245 * 89.99898 * 18 16 14 20 20 H 1.48502 * 109.47127 * 209.99677 * 18 16 14 21 21 H 1.48499 * 109.47061 * 329.99928 * 18 16 14 22 22 S 1.75836 * 109.08290 * 359.97438 * 6 5 4 23 23 C 1.33814 * 122.45005 * 85.00676 * 4 3 2 24 24 C 1.50702 * 124.52349 * 0.02562 * 23 4 3 25 25 H 1.09000 * 109.47152 * 299.99659 * 1 2 3 26 26 H 1.09001 * 109.46694 * 59.99740 * 1 2 3 27 27 H 1.09000 * 109.47071 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47670 * 240.00403 * 2 1 3 29 29 H 1.08997 * 109.47212 * 119.99735 * 2 1 3 30 30 H 1.09000 * 109.46946 * 60.00215 * 3 2 1 31 31 H 1.08994 * 109.47328 * 299.99506 * 3 2 1 32 32 H 1.08002 * 123.34591 * 0.05139 * 5 4 3 33 33 H 1.08997 * 109.46744 * 83.43345 * 10 9 7 34 34 H 1.08998 * 109.47001 * 203.43468 * 10 9 7 35 35 H 1.09000 * 109.46859 * 323.43506 * 10 9 7 36 36 H 1.09001 * 109.47012 * 59.99253 * 13 11 9 37 37 H 1.08997 * 109.47634 * 180.02562 * 13 11 9 38 38 H 1.09008 * 109.47084 * 300.00138 * 13 11 9 39 39 H 0.97003 * 120.00260 * 179.97438 * 17 16 14 40 40 H 1.08994 * 109.47252 * 179.97438 * 24 23 4 41 41 H 1.09005 * 109.47051 * 299.99327 * 24 23 4 42 42 H 1.09007 * 109.46522 * 59.98790 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.2842 1.5443 1.1565 6 6 5.6333 1.5258 0.9406 7 6 6.6623 1.6119 1.9809 8 8 6.3475 1.8667 3.1286 9 7 7.9571 1.4090 1.6665 10 6 8.3362 1.1031 0.2849 11 6 8.9854 1.4945 2.7065 12 1 8.5170 1.7295 3.6622 13 6 9.7167 0.1548 2.8121 14 6 9.9708 2.5779 2.3507 15 1 9.8439 3.1456 1.4408 16 6 11.0347 2.8436 3.1863 17 7 11.1895 2.1519 4.2942 18 14 12.2556 4.1869 2.7457 19 1 11.8011 5.4776 3.3225 20 1 13.5911 3.8419 3.2959 21 1 12.3454 4.3092 1.2685 22 16 5.9372 1.3736 -0.7846 23 6 4.2655 1.3441 -1.1240 24 6 3.6766 1.2237 -2.5059 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.8410 1.6300 2.1377 33 1 8.4274 2.0304 -0.2806 34 1 9.2913 0.5779 0.2780 35 1 7.5719 0.4734 -0.1706 36 1 10.1851 -0.0798 1.8562 37 1 10.4815 0.2182 3.5861 38 1 9.0040 -0.6289 3.0694 39 1 11.9383 2.3386 4.8819 40 1 4.4805 1.1598 -3.2392 41 1 3.0613 0.3256 -2.5617 42 1 3.0618 2.0990 -2.7163 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103442929.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:30 Heat of formation + Delta-G solvation = -37.798088 kcal Electronic energy + Delta-G solvation = -21608.184812 eV Core-core repulsion = 18485.686623 eV Total energy + Delta-G solvation = -3122.498189 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.90030 -39.58624 -37.22069 -35.12660 -34.86460 -32.95939 -31.45264 -29.32425 -27.93208 -27.33255 -26.72074 -24.64318 -23.08275 -22.13707 -20.54317 -19.29086 -18.98353 -18.40861 -17.32255 -16.92061 -16.50445 -16.30890 -15.64579 -15.38966 -15.04985 -14.65604 -14.53982 -14.42042 -14.15010 -13.82269 -13.67188 -13.58472 -13.38563 -13.03085 -12.91971 -12.76751 -12.75006 -12.68967 -12.65046 -12.26436 -12.19422 -12.11644 -11.94811 -11.48590 -11.25802 -11.19134 -10.90993 -10.54604 -9.75811 -9.30880 -9.19897 -8.16825 -6.34161 -0.41401 0.54991 1.04292 1.39773 1.41700 1.43028 1.52915 2.19794 2.24088 2.44938 3.11186 3.63450 3.90293 4.04665 4.14784 4.16742 4.30618 4.36614 4.48995 4.58344 4.63435 4.69187 4.76863 4.79632 4.83917 4.88151 4.93359 4.98555 5.03514 5.06391 5.13222 5.22003 5.25553 5.41043 5.47259 5.51412 5.55722 5.61234 5.63723 5.98024 6.11004 6.65047 6.72610 7.19465 7.39307 8.87945 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.028888 B = 0.003637 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.014880 B = 7696.626780 C = 8079.900880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C -0.054 4.054 4 C -0.134 4.134 5 C -0.055 4.055 6 C -0.302 4.302 7 C 0.565 3.435 8 O -0.599 6.599 9 N -0.593 5.593 10 C 0.070 3.930 11 C 0.263 3.737 12 H 0.010 0.990 13 C -0.134 4.134 14 C -0.541 4.541 15 H 0.062 0.938 16 C 0.016 3.984 17 N -0.917 5.917 18 Si 0.967 3.033 19 H -0.283 1.283 20 H -0.278 1.278 21 H -0.259 1.259 22 S 0.265 5.735 23 C -0.217 4.217 24 C -0.081 4.081 25 H 0.052 0.948 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.046 0.954 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.132 0.868 33 H 0.070 0.930 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.053 0.947 37 H 0.072 0.928 38 H 0.019 0.981 39 H 0.266 0.734 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.084 -4.524 -17.725 24.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C -0.093 4.093 4 C -0.145 4.145 5 C -0.089 4.089 6 C -0.422 4.422 7 C 0.354 3.646 8 O -0.484 6.484 9 N -0.322 5.322 10 C -0.074 4.074 11 C 0.161 3.839 12 H 0.028 0.972 13 C -0.192 4.192 14 C -0.580 4.580 15 H 0.080 0.920 16 C -0.184 4.184 17 N -0.556 5.556 18 Si 0.792 3.208 19 H -0.209 1.209 20 H -0.203 1.203 21 H -0.183 1.183 22 S 0.536 5.464 23 C -0.336 4.336 24 C -0.139 4.139 25 H 0.071 0.929 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.064 0.936 30 H 0.084 0.916 31 H 0.108 0.892 32 H 0.150 0.850 33 H 0.088 0.912 34 H 0.116 0.884 35 H 0.102 0.898 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.038 0.962 39 H 0.075 0.925 40 H 0.098 0.902 41 H 0.109 0.891 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -14.765 -4.504 -17.918 23.651 hybrid contribution -0.397 0.791 1.743 1.955 sum -15.163 -3.713 -16.175 22.480 Atomic orbital electron populations 1.21762 0.94523 1.02087 1.02270 1.21463 0.96469 0.95601 1.01878 1.20345 0.87697 0.97944 1.03354 1.18674 0.98409 1.06858 0.90533 1.20678 0.91008 0.96960 1.00277 1.24428 0.97588 1.21386 0.98773 1.17667 0.82644 0.77011 0.87264 1.90716 1.82151 1.52771 1.22751 1.48107 1.05946 1.67034 1.11159 1.22018 1.02450 1.01850 0.81074 1.18633 0.84521 0.94672 0.86039 0.97241 1.21906 1.00074 0.95251 1.01993 1.21551 1.09658 1.18615 1.08153 0.92016 1.25749 0.99501 0.98555 0.94550 1.70022 1.31377 1.41434 1.12725 0.85423 0.77832 0.78539 0.79043 1.20938 1.20343 1.18330 1.83219 1.01172 1.66623 0.95392 1.25158 1.01261 1.05812 1.01352 1.20490 1.01385 1.04110 0.87904 0.92935 0.91565 0.92296 0.91305 0.93553 0.91579 0.89222 0.85021 0.91209 0.88433 0.89769 0.92852 0.90945 0.96187 0.92506 0.90228 0.89120 0.89129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.91 71.98 0.71 -1.14 16 2 C -0.12 -1.86 5.92 30.60 0.18 -1.68 16 3 C -0.05 -0.97 5.11 29.85 0.15 -0.82 16 4 C -0.13 -3.22 5.04 -21.05 -0.11 -3.33 16 5 C -0.05 -1.77 9.79 21.72 0.21 -1.56 16 6 C -0.30 -10.91 6.24 24.07 0.15 -10.76 16 7 C 0.56 26.62 7.64 86.42 0.66 27.28 16 8 O -0.60 -33.83 16.18 -4.35 -0.07 -33.90 16 9 N -0.59 -27.16 2.75 -831.62 -2.29 -29.45 16 10 C 0.07 2.38 8.12 127.77 1.04 3.42 16 11 C 0.26 14.23 2.63 44.24 0.12 14.35 16 12 H 0.01 0.62 6.90 -2.39 -0.02 0.61 16 13 C -0.13 -6.59 8.96 71.98 0.64 -5.95 16 14 C -0.54 -30.05 8.37 25.60 0.21 -29.84 16 15 H 0.06 3.32 7.64 -2.91 -0.02 3.30 16 16 C 0.02 0.90 5.30 84.65 0.45 1.35 16 17 N -0.92 -53.41 11.32 21.44 0.24 -53.17 16 18 Si 0.97 43.33 29.54 68.60 2.03 45.36 16 19 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 20 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 21 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 22 S 0.27 6.61 17.82 -56.49 -1.01 5.60 16 23 C -0.22 -4.55 6.28 24.68 0.15 -4.40 16 24 C -0.08 -1.01 9.44 71.24 0.67 -0.33 16 25 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.07 0.99 7.41 -2.39 -0.02 0.98 16 29 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.07 1.24 8.10 -2.39 -0.02 1.22 16 31 H 0.09 1.24 7.45 -2.39 -0.02 1.23 16 32 H 0.13 4.50 8.06 -2.91 -0.02 4.47 16 33 H 0.07 2.20 7.77 -2.39 -0.02 2.18 16 34 H 0.10 3.20 6.45 -2.39 -0.02 3.19 16 35 H 0.09 2.37 4.61 -20.67 -0.10 2.28 16 36 H 0.05 2.33 6.67 -2.39 -0.02 2.32 16 37 H 0.07 3.93 6.07 -2.39 -0.01 3.91 16 38 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 39 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 40 H 0.08 0.81 8.11 -2.39 -0.02 0.79 16 41 H 0.09 0.91 7.41 -2.38 -0.02 0.89 16 42 H 0.09 0.92 7.92 -2.38 -0.02 0.90 16 Total: -1.00 -71.90 347.25 5.08 -66.83 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: 0.92 Total: 12.13 kcal Atomic # 6 Polarization: -18.65 SS G_CDS: 5.25 Total: -13.40 kcal Atomic # 7 Polarization: -80.57 SS G_CDS: -2.05 Total: -82.62 kcal Atomic # 8 Polarization: -33.83 SS G_CDS: -0.07 Total: -33.90 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Atomic # 16 Polarization: 6.61 SS G_CDS: -1.01 Total: 5.60 kcal Total: -71.90 5.08 -66.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103442929.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.029 kcal (2) G-P(sol) polarization free energy of solvation -71.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds