Wall clock time and date at job start Tue Mar 31 2020 07:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52995 * 109.47299 * 2 1 4 4 C 1.50700 * 109.47404 * 179.97438 * 3 2 1 5 5 C 1.37471 * 122.45179 * 264.97888 * 4 3 2 6 6 C 1.36648 * 113.29996 * 180.02562 * 5 4 3 7 7 C 1.46579 * 125.45692 * 179.97438 * 6 5 4 8 8 O 1.21705 * 120.00377 * 351.78197 * 7 6 5 9 9 N 1.34783 * 119.99939 * 171.77984 * 7 6 5 10 10 C 1.46503 * 119.99840 * 0.99138 * 9 7 6 11 11 C 1.46497 * 120.00150 * 180.98950 * 9 7 6 12 12 H 1.08999 * 109.46891 * 359.97438 * 11 9 7 13 13 C 1.52999 * 109.47122 * 240.00308 * 11 9 7 14 14 C 1.50697 * 109.47208 * 120.00054 * 11 9 7 15 15 H 1.07996 * 119.99830 * 0.02562 * 14 11 9 16 16 C 1.37873 * 120.00033 * 179.97438 * 14 11 9 17 17 N 1.31512 * 120.00013 * 0.02562 * 16 14 11 18 18 Si 1.86804 * 119.99917 * 179.97438 * 16 14 11 19 19 H 1.48499 * 109.47053 * 60.00568 * 18 16 14 20 20 H 1.48505 * 109.46987 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47236 * 300.00330 * 18 16 14 22 22 S 1.75827 * 109.08255 * 0.26113 * 6 5 4 23 23 C 1.33824 * 122.45082 * 84.99212 * 4 3 2 24 24 C 1.50699 * 124.51804 * 359.95500 * 23 4 3 25 25 H 1.09006 * 109.47381 * 300.00204 * 1 2 3 26 26 H 1.08997 * 109.47407 * 60.00164 * 1 2 3 27 27 H 1.09000 * 109.47503 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47142 * 239.99692 * 2 1 3 29 29 H 1.09003 * 109.47293 * 120.00223 * 2 1 3 30 30 H 1.08997 * 109.47275 * 59.99774 * 3 2 1 31 31 H 1.09006 * 109.47130 * 299.99780 * 3 2 1 32 32 H 1.08004 * 123.34596 * 359.97438 * 5 4 3 33 33 H 1.09000 * 109.46871 * 83.57387 * 10 9 7 34 34 H 1.09003 * 109.47200 * 323.57965 * 10 9 7 35 35 H 1.08996 * 109.47270 * 203.57688 * 10 9 7 36 36 H 1.09001 * 109.47769 * 59.99825 * 13 11 9 37 37 H 1.09002 * 109.47433 * 179.97438 * 13 11 9 38 38 H 1.09000 * 109.47184 * 299.99860 * 13 11 9 39 39 H 0.97006 * 120.00047 * 179.97438 * 17 16 14 40 40 H 1.08994 * 109.47363 * 89.99554 * 24 23 4 41 41 H 1.09008 * 109.46712 * 209.99366 * 24 23 4 42 42 H 1.09000 * 109.47357 * 329.98917 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 3.5469 1.4425 0.0006 5 6 4.2841 1.5442 1.1565 6 6 5.6333 1.5257 0.9405 7 6 6.6622 1.6179 1.9804 8 8 6.3464 1.8702 3.1284 9 7 7.9581 1.4231 1.6653 10 6 8.3406 1.1407 0.2796 11 6 8.9843 1.4938 2.7085 12 1 8.5134 1.7119 3.6671 13 6 9.9827 2.6018 2.3675 14 6 9.7074 0.1743 2.7921 15 1 9.4306 -0.6358 2.1337 16 6 10.7230 0.0016 3.7083 17 7 11.0604 0.9882 4.5098 18 14 11.6189 -1.6343 3.8124 19 1 12.2598 -1.9317 2.5063 20 1 12.6599 -1.5622 4.8690 21 1 10.6496 -2.7093 4.1443 22 16 5.9373 1.3819 -0.7853 23 6 4.2655 1.3437 -1.1240 24 6 3.6765 1.2215 -2.5057 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8932 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 3.8409 1.6309 2.1376 33 1 8.4331 2.0776 -0.2699 34 1 7.5774 0.5190 -0.1885 35 1 9.2956 0.6157 0.2660 36 1 9.4597 3.5563 2.3071 37 1 10.7459 2.6548 3.1439 38 1 10.4536 2.3842 1.4089 39 1 11.7747 0.8666 5.1547 40 1 3.5337 2.2156 -2.9291 41 1 4.3542 0.6502 -3.1403 42 1 2.7157 0.7100 -2.4472 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103442930.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:34 Heat of formation + Delta-G solvation = -20.754241 kcal Electronic energy + Delta-G solvation = -21619.926335 eV Core-core repulsion = 18498.167222 eV Total energy + Delta-G solvation = -3121.759113 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.31448 -38.39107 -35.38659 -34.21023 -32.99298 -31.83616 -29.66240 -28.39185 -26.36234 -25.69922 -25.21605 -23.39885 -22.03666 -20.73904 -19.08941 -18.05758 -17.49949 -16.49214 -15.75935 -15.51601 -14.86933 -14.81616 -14.63118 -14.08943 -14.00885 -13.47648 -13.20190 -12.96711 -12.72804 -12.66710 -12.50889 -12.25789 -12.05505 -11.84901 -11.64886 -11.58978 -11.34222 -11.20769 -11.05337 -10.86393 -10.77627 -10.71006 -10.31080 -10.19357 -10.06953 -9.26916 -9.11276 -8.45162 -8.41559 -8.15741 -7.62159 -6.09218 -4.17817 0.81249 1.73709 2.17006 2.59449 3.27215 3.32485 3.34169 3.78818 3.91943 4.38240 4.78490 4.81056 4.92078 5.02348 5.11139 5.17860 5.22451 5.38190 5.41617 5.51095 5.54691 5.61313 5.69640 5.72662 5.82507 5.84122 5.89528 5.99851 6.15359 6.20225 6.24937 6.49533 6.64194 6.74038 6.81589 7.03237 7.36358 7.49720 7.68346 7.98674 8.15772 8.43893 8.78968 8.97476 9.48641 10.96120 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.023634 B = 0.003715 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.469033 B = 7534.643735 C = 7739.925079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.058 4.058 4 C -0.119 4.119 5 C -0.062 4.062 6 C -0.247 4.247 7 C 0.574 3.426 8 O -0.541 6.541 9 N -0.585 5.585 10 C 0.072 3.928 11 C 0.260 3.740 12 H 0.066 0.934 13 C -0.147 4.147 14 C -0.530 4.530 15 H 0.060 0.940 16 C 0.066 3.934 17 N -0.887 5.887 18 Si 0.900 3.100 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.276 1.276 22 S 0.220 5.780 23 C -0.242 4.242 24 C -0.080 4.080 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.147 0.853 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.100 0.900 36 H 0.012 0.988 37 H 0.095 0.905 38 H 0.030 0.970 39 H 0.265 0.735 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.511 0.381 -14.613 20.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.097 4.097 4 C -0.131 4.131 5 C -0.095 4.095 6 C -0.368 4.368 7 C 0.360 3.640 8 O -0.421 6.421 9 N -0.316 5.316 10 C -0.075 4.075 11 C 0.160 3.840 12 H 0.084 0.916 13 C -0.205 4.205 14 C -0.568 4.568 15 H 0.078 0.922 16 C -0.137 4.137 17 N -0.525 5.525 18 Si 0.727 3.273 19 H -0.202 1.202 20 H -0.211 1.211 21 H -0.202 1.202 22 S 0.490 5.510 23 C -0.360 4.360 24 C -0.138 4.138 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.165 0.835 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.118 0.882 36 H 0.031 0.969 37 H 0.113 0.887 38 H 0.049 0.951 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.195 0.500 -14.763 19.807 hybrid contribution -0.761 -0.865 0.859 1.437 sum -13.956 -0.365 -13.904 19.703 Atomic orbital electron populations 1.21786 0.95888 1.01542 1.01710 1.21512 0.95319 0.96474 1.02465 1.20298 0.89879 0.97072 1.02474 1.18532 0.96837 1.06197 0.91539 1.20515 0.91177 0.98278 0.99491 1.24838 0.98349 1.16726 0.96864 1.17031 0.81921 0.78244 0.86798 1.90776 1.81162 1.50324 1.19879 1.48149 1.06556 1.67239 1.09608 1.21821 1.02112 1.00410 0.83124 1.19002 0.83697 0.94972 0.86336 0.91646 1.22102 1.01098 0.95715 1.01621 1.21276 1.17712 0.97712 1.20121 0.92205 1.24885 0.96721 0.96948 0.95098 1.69870 1.30009 1.31273 1.21303 0.86537 0.79259 0.83737 0.77754 1.20182 1.21128 1.20195 1.83646 1.00098 1.67725 0.99506 1.24662 1.02307 1.09281 0.99721 1.20306 1.00770 1.02234 0.90536 0.92680 0.92888 0.92817 0.92009 0.91710 0.91133 0.91337 0.83549 0.92888 0.92287 0.88199 0.96877 0.88657 0.95075 0.92549 0.91057 0.91558 0.90903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.91 37.15 0.37 -0.80 16 2 C -0.12 -1.13 5.85 -26.74 -0.16 -1.29 16 3 C -0.06 -0.59 4.82 -27.89 -0.13 -0.73 16 4 C -0.12 -1.55 5.04 -106.45 -0.54 -2.09 16 5 C -0.06 -0.99 9.79 -40.44 -0.40 -1.39 16 6 C -0.25 -4.41 6.24 -36.79 -0.23 -4.64 16 7 C 0.57 12.84 7.64 -12.89 -0.10 12.74 16 8 O -0.54 -14.09 16.18 5.18 0.08 -14.01 16 9 N -0.59 -12.98 2.75 -176.84 -0.49 -13.46 16 10 C 0.07 1.24 7.87 59.85 0.47 1.71 16 11 C 0.26 6.71 2.63 -69.09 -0.18 6.53 16 12 H 0.07 1.96 6.90 -51.93 -0.36 1.60 16 13 C -0.15 -3.53 8.97 37.16 0.33 -3.19 16 14 C -0.53 -14.32 7.95 -34.44 -0.27 -14.59 16 15 H 0.06 1.58 7.44 -52.49 -0.39 1.19 16 16 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 17 N -0.89 -25.03 11.32 55.43 0.63 -24.40 16 18 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 19 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 S 0.22 2.99 17.85 -107.50 -1.92 1.07 16 23 C -0.24 -2.96 6.28 -35.86 -0.23 -3.18 16 24 C -0.08 -0.71 9.71 36.01 0.35 -0.36 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.57 7.24 -51.93 -0.38 0.20 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 31 H 0.07 0.62 7.47 -51.93 -0.39 0.23 16 32 H 0.15 2.35 8.06 -52.48 -0.42 1.93 16 33 H 0.05 0.81 7.82 -51.93 -0.41 0.40 16 34 H 0.06 0.92 4.51 -22.52 -0.10 0.82 16 35 H 0.10 1.78 7.12 -51.93 -0.37 1.41 16 36 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.09 2.50 6.07 -51.93 -0.32 2.18 16 38 H 0.03 0.68 7.67 -51.93 -0.40 0.28 16 39 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 42 H 0.07 0.58 6.39 -51.93 -0.33 0.25 16 LS Contribution 347.04 15.07 5.23 5.23 Total: -1.00 -30.89 347.04 -8.66 -39.56 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -6.37 Total: -0.35 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: -0.80 Total: -9.57 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: 0.14 Total: -37.87 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: 0.08 Total: -14.01 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: 2.99 SS G_CDS: -1.92 Total: 1.07 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.89 -8.66 -39.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103442930.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.802 kcal (2) G-P(sol) polarization free energy of solvation -30.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds