Wall clock time and date at job start Tue Mar 31 2020 07:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52995 * 109.47299 * 2 1 4 4 C 1.50700 * 109.47404 * 179.97438 * 3 2 1 5 5 C 1.37471 * 122.45179 * 264.97888 * 4 3 2 6 6 C 1.36648 * 113.29996 * 180.02562 * 5 4 3 7 7 C 1.46579 * 125.45692 * 179.97438 * 6 5 4 8 8 O 1.21705 * 120.00377 * 351.78197 * 7 6 5 9 9 N 1.34783 * 119.99939 * 171.77984 * 7 6 5 10 10 C 1.46503 * 119.99840 * 0.99138 * 9 7 6 11 11 C 1.46497 * 120.00150 * 180.98950 * 9 7 6 12 12 H 1.08999 * 109.46891 * 359.97438 * 11 9 7 13 13 C 1.52999 * 109.47122 * 240.00308 * 11 9 7 14 14 C 1.50697 * 109.47208 * 120.00054 * 11 9 7 15 15 H 1.07996 * 119.99830 * 0.02562 * 14 11 9 16 16 C 1.37873 * 120.00033 * 179.97438 * 14 11 9 17 17 N 1.31512 * 120.00013 * 0.02562 * 16 14 11 18 18 Si 1.86804 * 119.99917 * 179.97438 * 16 14 11 19 19 H 1.48499 * 109.47053 * 60.00568 * 18 16 14 20 20 H 1.48505 * 109.46987 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47236 * 300.00330 * 18 16 14 22 22 S 1.75827 * 109.08255 * 0.26113 * 6 5 4 23 23 C 1.33824 * 122.45082 * 84.99212 * 4 3 2 24 24 C 1.50699 * 124.51804 * 359.95500 * 23 4 3 25 25 H 1.09006 * 109.47381 * 300.00204 * 1 2 3 26 26 H 1.08997 * 109.47407 * 60.00164 * 1 2 3 27 27 H 1.09000 * 109.47503 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47142 * 239.99692 * 2 1 3 29 29 H 1.09003 * 109.47293 * 120.00223 * 2 1 3 30 30 H 1.08997 * 109.47275 * 59.99774 * 3 2 1 31 31 H 1.09006 * 109.47130 * 299.99780 * 3 2 1 32 32 H 1.08004 * 123.34596 * 359.97438 * 5 4 3 33 33 H 1.09000 * 109.46871 * 83.57387 * 10 9 7 34 34 H 1.09003 * 109.47200 * 323.57965 * 10 9 7 35 35 H 1.08996 * 109.47270 * 203.57688 * 10 9 7 36 36 H 1.09001 * 109.47769 * 59.99825 * 13 11 9 37 37 H 1.09002 * 109.47433 * 179.97438 * 13 11 9 38 38 H 1.09000 * 109.47184 * 299.99860 * 13 11 9 39 39 H 0.97006 * 120.00047 * 179.97438 * 17 16 14 40 40 H 1.08994 * 109.47363 * 89.99554 * 24 23 4 41 41 H 1.09008 * 109.46712 * 209.99366 * 24 23 4 42 42 H 1.09000 * 109.47357 * 329.98917 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 3.5469 1.4425 0.0006 5 6 4.2841 1.5442 1.1565 6 6 5.6333 1.5257 0.9405 7 6 6.6622 1.6179 1.9804 8 8 6.3464 1.8702 3.1284 9 7 7.9581 1.4231 1.6653 10 6 8.3406 1.1407 0.2796 11 6 8.9843 1.4938 2.7085 12 1 8.5134 1.7119 3.6671 13 6 9.9827 2.6018 2.3675 14 6 9.7074 0.1743 2.7921 15 1 9.4306 -0.6358 2.1337 16 6 10.7230 0.0016 3.7083 17 7 11.0604 0.9882 4.5098 18 14 11.6189 -1.6343 3.8124 19 1 12.2598 -1.9317 2.5063 20 1 12.6599 -1.5622 4.8690 21 1 10.6496 -2.7093 4.1443 22 16 5.9373 1.3819 -0.7853 23 6 4.2655 1.3437 -1.1240 24 6 3.6765 1.2215 -2.5057 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8932 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 3.8409 1.6309 2.1376 33 1 8.4331 2.0776 -0.2699 34 1 7.5774 0.5190 -0.1885 35 1 9.2956 0.6157 0.2660 36 1 9.4597 3.5563 2.3071 37 1 10.7459 2.6548 3.1439 38 1 10.4536 2.3842 1.4089 39 1 11.7747 0.8666 5.1547 40 1 3.5337 2.2156 -2.9291 41 1 4.3542 0.6502 -3.1403 42 1 2.7157 0.7100 -2.4472 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103442930.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:33 Heat of formation + Delta-G solvation = -37.984942 kcal Electronic energy + Delta-G solvation = -21620.673514 eV Core-core repulsion = 18498.167222 eV Total energy + Delta-G solvation = -3122.506292 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.89882 -39.59666 -37.21621 -35.13930 -34.86755 -32.95077 -31.45459 -29.32684 -27.89731 -27.34417 -26.73426 -24.63980 -23.08770 -22.13954 -20.54869 -19.29872 -18.98617 -18.40264 -17.32273 -16.95580 -16.43829 -16.34613 -15.67627 -15.39820 -15.04105 -14.62502 -14.47924 -14.41826 -14.11051 -13.85196 -13.73245 -13.54325 -13.34090 -13.02265 -12.97021 -12.79392 -12.74082 -12.71281 -12.58884 -12.25771 -12.22712 -12.13209 -11.95623 -11.51264 -11.28548 -11.17388 -10.90678 -10.53836 -9.75341 -9.30593 -9.19325 -8.16938 -6.34435 -0.41784 0.54822 1.04667 1.39557 1.42105 1.44166 1.51683 2.14974 2.29343 2.44408 3.11131 3.63704 3.90218 4.04714 4.14487 4.17178 4.29995 4.35640 4.49140 4.58850 4.67175 4.69118 4.78591 4.80264 4.85576 4.86396 4.90196 4.98500 5.03436 5.05891 5.13677 5.21654 5.25908 5.42352 5.46412 5.50626 5.54073 5.60919 5.63474 5.98355 6.11193 6.64890 6.72130 7.19360 7.39027 8.87735 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.023634 B = 0.003715 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.469033 B = 7534.643735 C = 7739.925079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C -0.054 4.054 4 C -0.133 4.133 5 C -0.056 4.056 6 C -0.302 4.302 7 C 0.565 3.435 8 O -0.600 6.600 9 N -0.593 5.593 10 C 0.068 3.932 11 C 0.263 3.737 12 H 0.009 0.991 13 C -0.132 4.132 14 C -0.544 4.544 15 H 0.062 0.938 16 C 0.017 3.983 17 N -0.917 5.917 18 Si 0.967 3.033 19 H -0.259 1.259 20 H -0.283 1.283 21 H -0.278 1.278 22 S 0.268 5.732 23 C -0.218 4.218 24 C -0.084 4.084 25 H 0.052 0.948 26 H 0.066 0.934 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.044 0.956 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.131 0.869 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.019 0.981 37 H 0.071 0.929 38 H 0.051 0.949 39 H 0.266 0.734 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.550 -0.605 -18.445 24.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.094 4.094 4 C -0.144 4.144 5 C -0.090 4.090 6 C -0.421 4.421 7 C 0.354 3.646 8 O -0.484 6.484 9 N -0.322 5.322 10 C -0.077 4.077 11 C 0.162 3.838 12 H 0.027 0.973 13 C -0.191 4.191 14 C -0.582 4.582 15 H 0.081 0.919 16 C -0.183 4.183 17 N -0.555 5.555 18 Si 0.792 3.208 19 H -0.183 1.183 20 H -0.208 1.208 21 H -0.204 1.204 22 S 0.538 5.462 23 C -0.337 4.337 24 C -0.142 4.142 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.063 0.937 30 H 0.085 0.915 31 H 0.109 0.891 32 H 0.149 0.851 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.115 0.885 36 H 0.038 0.962 37 H 0.090 0.910 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.109 0.891 41 H 0.101 0.899 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.224 -0.489 -18.648 23.459 hybrid contribution -0.560 -0.531 1.976 2.122 sum -14.784 -1.020 -16.671 22.305 Atomic orbital electron populations 1.21760 0.94442 1.02082 1.02334 1.21488 0.96555 0.95703 1.01824 1.20350 0.87730 0.97835 1.03439 1.18686 0.98399 1.06801 0.90535 1.20679 0.91070 0.97047 1.00251 1.24432 0.97574 1.21306 0.98817 1.17673 0.82654 0.77044 0.87224 1.90717 1.82104 1.52946 1.22640 1.48112 1.06034 1.67274 1.10792 1.22067 1.02651 1.02180 0.80756 1.18620 0.84263 0.95384 0.85534 0.97289 1.21891 1.00048 0.95439 1.01702 1.21528 1.17972 0.98220 1.20519 0.91935 1.25750 0.97502 1.00472 0.94565 1.70017 1.30436 1.33269 1.21778 0.85474 0.77871 0.79017 0.78456 1.18330 1.20792 1.20401 1.83171 1.01040 1.66772 0.95172 1.25176 1.01417 1.05772 1.01340 1.20527 1.01683 1.03921 0.88088 0.92886 0.91454 0.92364 0.91353 0.93687 0.91464 0.89107 0.85089 0.90281 0.90223 0.88533 0.96231 0.91004 0.92995 0.92483 0.89089 0.89930 0.89267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.91 71.98 0.71 -1.20 16 2 C -0.12 -1.96 5.85 30.59 0.18 -1.78 16 3 C -0.05 -0.98 4.82 29.85 0.14 -0.84 16 4 C -0.13 -3.24 5.04 -21.05 -0.11 -3.34 16 5 C -0.06 -1.82 9.79 21.72 0.21 -1.61 16 6 C -0.30 -10.91 6.24 24.08 0.15 -10.76 16 7 C 0.56 26.63 7.64 86.42 0.66 27.29 16 8 O -0.60 -33.86 16.18 -4.36 -0.07 -33.93 16 9 N -0.59 -27.13 2.75 -831.62 -2.29 -29.42 16 10 C 0.07 2.29 7.87 127.77 1.01 3.29 16 11 C 0.26 14.27 2.63 44.24 0.12 14.39 16 12 H 0.01 0.59 6.90 -2.39 -0.02 0.58 16 13 C -0.13 -6.53 8.97 71.98 0.65 -5.89 16 14 C -0.54 -30.15 7.95 25.60 0.20 -29.94 16 15 H 0.06 3.34 7.44 -2.91 -0.02 3.32 16 16 C 0.02 0.94 5.30 84.65 0.45 1.39 16 17 N -0.92 -53.37 11.32 21.45 0.24 -53.13 16 18 Si 0.97 43.21 29.54 68.60 2.03 45.23 16 19 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 20 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 21 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 22 S 0.27 6.61 17.85 -56.49 -1.01 5.60 16 23 C -0.22 -4.59 6.28 24.68 0.15 -4.44 16 24 C -0.08 -1.05 9.71 71.24 0.69 -0.36 16 25 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 26 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.07 1.04 7.24 -2.39 -0.02 1.03 16 29 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.07 1.26 8.10 -2.39 -0.02 1.24 16 31 H 0.09 1.26 7.47 -2.38 -0.02 1.24 16 32 H 0.13 4.53 8.06 -2.91 -0.02 4.50 16 33 H 0.08 2.25 7.82 -2.39 -0.02 2.23 16 34 H 0.08 2.34 4.51 -21.08 -0.10 2.25 16 35 H 0.10 3.33 7.12 -2.39 -0.02 3.31 16 36 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.07 3.90 6.07 -2.39 -0.01 3.88 16 38 H 0.05 2.28 7.67 -2.39 -0.02 2.26 16 39 H 0.27 14.65 8.31 -92.70 -0.77 13.88 16 40 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 42 H 0.09 0.92 6.39 -2.39 -0.02 0.90 16 Total: -1.00 -71.84 347.04 5.04 -66.80 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: 0.92 Total: 12.64 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: 5.22 Total: -13.81 kcal Atomic # 7 Polarization: -80.50 SS G_CDS: -2.05 Total: -82.54 kcal Atomic # 8 Polarization: -33.86 SS G_CDS: -0.07 Total: -33.93 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 16 Polarization: 6.61 SS G_CDS: -1.01 Total: 5.60 kcal Total: -71.84 5.04 -66.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103442930.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.818 kcal (2) G-P(sol) polarization free energy of solvation -71.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds