Wall clock time and date at job start Tue Mar 31 2020 07:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46948 * 2 1 4 4 C 1.53001 * 109.47204 * 65.00024 * 3 2 1 5 5 C 1.53001 * 109.47362 * 180.85728 * 4 3 2 6 6 C 1.52999 * 109.47022 * 184.99830 * 3 2 1 7 7 N 1.46497 * 109.47004 * 53.75176 * 6 3 2 8 8 C 1.46504 * 119.99843 * 276.82724 * 7 6 3 9 9 C 1.50707 * 109.46965 * 270.00203 * 8 7 6 10 10 H 1.07994 * 120.00008 * 359.97438 * 9 8 7 11 11 C 1.37877 * 119.99689 * 179.97438 * 9 8 7 12 12 N 1.31512 * 119.99941 * 179.97438 * 11 9 8 13 13 Si 1.86801 * 120.00238 * 0.02562 * 11 9 8 14 14 H 1.48492 * 109.47389 * 89.99662 * 13 11 9 15 15 H 1.48497 * 109.47064 * 210.00061 * 13 11 9 16 16 H 1.48503 * 109.47143 * 329.99886 * 13 11 9 17 17 C 1.34771 * 120.00315 * 96.82998 * 7 6 3 18 18 O 1.21639 * 120.00010 * 185.72363 * 17 7 6 19 19 C 1.47190 * 119.99943 * 5.72424 * 17 7 6 20 20 C 1.44428 * 123.45907 * 142.96617 * 19 17 7 21 21 C 1.32772 * 113.08337 * 179.97438 * 20 19 17 22 22 S 1.75509 * 110.57485 * 359.77724 * 21 20 19 23 23 C 1.36010 * 123.46046 * 322.94333 * 19 17 7 24 24 H 1.08998 * 109.47492 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47328 * 299.99807 * 1 2 3 26 26 H 1.09006 * 109.46918 * 59.99729 * 1 2 3 27 27 H 1.09000 * 109.47328 * 240.00193 * 2 1 3 28 28 H 1.08994 * 109.46966 * 119.99862 * 2 1 3 29 29 H 1.09006 * 109.47489 * 305.00218 * 3 2 1 30 30 H 1.09000 * 109.47538 * 300.85741 * 4 3 2 31 31 H 1.09005 * 109.47230 * 60.85654 * 4 3 2 32 32 H 1.09002 * 109.47281 * 60.31728 * 5 4 3 33 33 H 1.09001 * 109.47520 * 180.31804 * 5 4 3 34 34 H 1.09006 * 109.47078 * 300.31869 * 5 4 3 35 35 H 1.08998 * 109.47392 * 293.74566 * 6 3 2 36 36 H 1.09010 * 109.47305 * 173.74788 * 6 3 2 37 37 H 1.08999 * 109.46896 * 29.99564 * 8 7 6 38 38 H 1.08996 * 109.47412 * 150.00099 * 8 7 6 39 39 H 0.97000 * 120.00239 * 179.97438 * 12 11 9 40 40 H 1.07998 * 123.45976 * 0.02562 * 20 19 17 41 41 H 1.07994 * 124.71290 * 180.02562 * 21 20 19 42 42 H 1.07992 * 124.58975 * 359.97438 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.6352 2.1265 1.3074 5 6 2.1266 3.5755 1.2983 6 6 3.5648 1.4443 -0.1257 7 7 3.9589 0.6609 -1.2992 8 6 4.0709 -0.7966 -1.2029 9 6 5.4745 -1.1669 -0.7977 10 1 6.2096 -0.3939 -0.6292 11 6 5.8200 -2.4926 -0.6422 12 7 7.0449 -2.8158 -0.2891 13 14 4.5487 -3.8297 -0.9343 14 1 4.5853 -4.2448 -2.3596 15 1 4.8522 -4.9987 -0.0703 16 1 3.1976 -3.3086 -0.6052 17 6 4.2186 1.2810 -2.4672 18 8 4.4439 0.6256 -3.4668 19 6 4.2296 2.7514 -2.5333 20 6 5.1536 3.5050 -3.3484 21 6 4.9808 4.8179 -3.2528 22 16 3.6625 5.1882 -2.1549 23 6 3.3703 3.5400 -1.8335 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6053 1.9816 -0.8418 30 1 0.5496 2.1117 1.4043 31 1 2.0823 1.5965 2.1484 32 1 1.6751 4.1071 0.4606 33 1 1.8432 4.0612 2.2321 34 1 3.2117 3.5905 1.1958 35 1 4.0037 1.0038 0.7695 36 1 3.9189 2.4692 -0.2374 37 1 3.3678 -1.1665 -0.4566 38 1 3.8423 -1.2433 -2.1705 39 1 7.2879 -3.7484 -0.1793 40 1 5.9072 3.0475 -3.9722 41 1 5.5671 5.5554 -3.7806 42 1 2.6036 3.1715 -1.1682 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104543781.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:16 Heat of formation + Delta-G solvation = 0.134011 kcal Electronic energy + Delta-G solvation = -22767.572704 eV Core-core repulsion = 19646.719374 eV Total energy + Delta-G solvation = -3120.853330 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -39.94711 -37.42350 -36.53409 -34.24137 -32.52539 -31.88880 -30.07936 -28.43139 -27.38052 -24.87778 -23.94284 -23.02319 -22.13124 -20.21654 -20.08507 -18.25614 -17.51821 -16.94265 -16.48566 -15.47864 -14.90372 -14.59584 -14.56094 -14.04908 -13.98634 -13.58791 -13.27062 -13.22224 -12.79467 -12.69787 -12.41914 -12.33123 -12.22583 -11.91212 -11.69506 -11.51692 -11.27259 -11.09375 -11.05325 -10.98711 -10.61817 -10.44226 -10.30806 -10.22915 -9.94452 -9.51027 -9.13292 -8.83770 -8.57543 -8.29687 -7.68465 -6.08423 -4.06779 0.97157 1.64836 1.99541 2.36035 3.28552 3.34288 3.36732 3.58696 3.93586 4.39379 4.78347 4.82798 4.91032 4.96503 5.17674 5.23915 5.24986 5.36176 5.43853 5.49135 5.55991 5.57744 5.68451 5.77729 5.81655 5.93346 5.98091 6.03332 6.08561 6.19901 6.22012 6.28061 6.28994 6.38582 6.50123 6.58695 6.73822 6.95171 7.34155 7.61997 8.22514 8.47249 8.91369 8.97646 9.51760 11.04998 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.013789 B = 0.006255 C = 0.004871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.060307 B = 4475.421273 C = 5747.210020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.130 4.130 3 C -0.111 4.111 4 C -0.119 4.119 5 C -0.161 4.161 6 C 0.097 3.903 7 N -0.579 5.579 8 C 0.207 3.793 9 C -0.529 4.529 10 H 0.074 0.926 11 C 0.073 3.927 12 N -0.897 5.897 13 Si 0.873 3.127 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.265 1.265 17 C 0.568 3.432 18 O -0.537 6.537 19 C -0.135 4.135 20 C -0.085 4.085 21 C -0.235 4.235 22 S 0.146 5.854 23 C -0.234 4.234 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.049 0.951 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.050 0.950 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.045 0.955 38 H 0.037 0.963 39 H 0.264 0.736 40 H 0.151 0.849 41 H 0.166 0.834 42 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.801 15.818 1.748 19.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.168 4.168 3 C -0.130 4.130 4 C -0.157 4.157 5 C -0.218 4.218 6 C -0.027 4.027 7 N -0.308 5.308 8 C 0.087 3.913 9 C -0.568 4.568 10 H 0.093 0.907 11 C -0.129 4.129 12 N -0.536 5.536 13 Si 0.699 3.301 14 H -0.199 1.199 15 H -0.211 1.211 16 H -0.189 1.189 17 C 0.353 3.647 18 O -0.415 6.415 19 C -0.153 4.153 20 C -0.115 4.115 21 C -0.370 4.370 22 S 0.410 5.590 23 C -0.371 4.371 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.063 0.937 38 H 0.055 0.945 39 H 0.074 0.926 40 H 0.169 0.831 41 H 0.184 0.816 42 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -12.201 16.615 1.759 20.689 hybrid contribution 0.220 -2.174 -0.545 2.252 sum -11.982 14.441 1.214 18.803 Atomic orbital electron populations 1.21831 0.96460 1.01326 1.01204 1.21873 0.95140 0.96048 1.03698 1.21785 0.96444 0.97077 0.97685 1.21610 1.01096 0.95529 0.97484 1.21945 1.01832 0.96561 1.01490 1.21985 0.93335 0.97148 0.90221 1.47728 1.65447 1.08985 1.08688 1.19948 0.98239 0.75166 0.97944 1.21353 0.95174 0.93539 1.46706 0.90747 1.24834 0.95208 0.98335 0.94519 1.69894 1.17999 1.18054 1.47608 0.86901 0.82315 0.81974 0.78866 1.19888 1.21057 1.18920 1.17569 0.77675 0.85646 0.83784 1.90763 1.49580 1.66451 1.34686 1.20581 0.98967 0.95290 1.00467 1.21202 0.99315 0.92148 0.98810 1.25396 1.04783 0.99630 1.07167 1.82829 1.29985 1.04606 1.41558 1.26441 1.06417 0.98335 1.05891 0.93001 0.92856 0.93193 0.90117 0.91406 0.91300 0.91559 0.91313 0.93090 0.92547 0.92078 0.89787 0.89653 0.93748 0.94508 0.92578 0.83122 0.81642 0.79691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.67 37.16 0.36 -1.44 16 2 C -0.13 -1.90 4.00 -26.73 -0.11 -2.01 16 3 C -0.11 -1.46 1.66 -90.62 -0.15 -1.61 16 4 C -0.12 -1.24 5.23 -26.73 -0.14 -1.38 16 5 C -0.16 -1.48 8.86 37.16 0.33 -1.16 16 6 C 0.10 1.57 4.08 -4.04 -0.02 1.56 16 7 N -0.58 -12.08 2.20 -176.41 -0.39 -12.46 16 8 C 0.21 5.02 2.95 -5.19 -0.02 5.01 16 9 C -0.53 -15.20 9.94 -34.44 -0.34 -15.54 16 10 H 0.07 2.35 8.06 -52.49 -0.42 1.93 16 11 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 12 N -0.90 -27.68 13.96 55.43 0.77 -26.91 16 13 Si 0.87 21.52 27.47 -169.99 -4.67 16.85 16 14 H -0.27 -6.82 7.11 56.52 0.40 -6.41 16 15 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 16 H -0.26 -6.06 6.54 56.52 0.37 -5.69 16 17 C 0.57 12.30 7.48 -12.63 -0.09 12.20 16 18 O -0.54 -13.78 16.57 5.24 0.09 -13.69 16 19 C -0.14 -2.32 5.41 -104.63 -0.57 -2.89 16 20 C -0.09 -1.30 10.29 -39.02 -0.40 -1.70 16 21 C -0.24 -2.79 11.12 28.86 0.32 -2.46 16 22 S 0.15 1.57 23.02 -107.50 -2.48 -0.91 16 23 C -0.23 -3.18 8.35 29.93 0.25 -2.93 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.55 6.55 -51.93 -0.34 0.21 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.08 1.41 5.24 -51.93 -0.27 1.14 16 28 H 0.07 1.02 7.91 -51.93 -0.41 0.61 16 29 H 0.07 0.89 6.25 -51.93 -0.32 0.57 16 30 H 0.07 0.62 6.53 -51.93 -0.34 0.28 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.44 7.44 -51.93 -0.39 0.05 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.60 6.58 -51.93 -0.34 0.26 16 35 H 0.08 1.44 8.12 -51.93 -0.42 1.02 16 36 H 0.09 1.26 3.41 -51.92 -0.18 1.08 16 37 H 0.04 1.01 4.32 -51.93 -0.22 0.78 16 38 H 0.04 0.97 6.78 -51.93 -0.35 0.61 16 39 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 40 H 0.15 2.31 8.06 -52.49 -0.42 1.88 16 41 H 0.17 1.47 8.06 -52.49 -0.42 1.05 16 42 H 0.19 2.31 1.91 -52.49 -0.10 2.21 16 LS Contribution 334.56 15.07 5.04 5.04 Total: -1.00 -33.23 334.56 -8.12 -41.35 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -5.82 Total: 3.04 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: -0.67 Total: -12.31 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: 0.39 Total: -39.37 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: 0.09 Total: -13.69 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Atomic # 16 Polarization: 1.57 SS G_CDS: -2.48 Total: -0.91 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.23 -8.12 -41.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104543781.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.480 kcal (2) G-P(sol) polarization free energy of solvation -33.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds