Wall clock time and date at job start Tue Mar 31 2020 07:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46948 * 2 1 4 4 C 1.53001 * 109.47204 * 65.00024 * 3 2 1 5 5 C 1.53001 * 109.47362 * 180.85728 * 4 3 2 6 6 C 1.52999 * 109.47022 * 184.99830 * 3 2 1 7 7 N 1.46497 * 109.47004 * 53.75176 * 6 3 2 8 8 C 1.46504 * 119.99843 * 276.82724 * 7 6 3 9 9 C 1.50707 * 109.46965 * 270.00203 * 8 7 6 10 10 H 1.07994 * 120.00008 * 359.97438 * 9 8 7 11 11 C 1.37877 * 119.99689 * 179.97438 * 9 8 7 12 12 N 1.31512 * 119.99941 * 179.97438 * 11 9 8 13 13 Si 1.86801 * 120.00238 * 0.02562 * 11 9 8 14 14 H 1.48492 * 109.47389 * 89.99662 * 13 11 9 15 15 H 1.48497 * 109.47064 * 210.00061 * 13 11 9 16 16 H 1.48503 * 109.47143 * 329.99886 * 13 11 9 17 17 C 1.34771 * 120.00315 * 96.82998 * 7 6 3 18 18 O 1.21639 * 120.00010 * 185.72363 * 17 7 6 19 19 C 1.47190 * 119.99943 * 5.72424 * 17 7 6 20 20 C 1.44428 * 123.45907 * 142.96617 * 19 17 7 21 21 C 1.32772 * 113.08337 * 179.97438 * 20 19 17 22 22 S 1.75509 * 110.57485 * 359.77724 * 21 20 19 23 23 C 1.36010 * 123.46046 * 322.94333 * 19 17 7 24 24 H 1.08998 * 109.47492 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47328 * 299.99807 * 1 2 3 26 26 H 1.09006 * 109.46918 * 59.99729 * 1 2 3 27 27 H 1.09000 * 109.47328 * 240.00193 * 2 1 3 28 28 H 1.08994 * 109.46966 * 119.99862 * 2 1 3 29 29 H 1.09006 * 109.47489 * 305.00218 * 3 2 1 30 30 H 1.09000 * 109.47538 * 300.85741 * 4 3 2 31 31 H 1.09005 * 109.47230 * 60.85654 * 4 3 2 32 32 H 1.09002 * 109.47281 * 60.31728 * 5 4 3 33 33 H 1.09001 * 109.47520 * 180.31804 * 5 4 3 34 34 H 1.09006 * 109.47078 * 300.31869 * 5 4 3 35 35 H 1.08998 * 109.47392 * 293.74566 * 6 3 2 36 36 H 1.09010 * 109.47305 * 173.74788 * 6 3 2 37 37 H 1.08999 * 109.46896 * 29.99564 * 8 7 6 38 38 H 1.08996 * 109.47412 * 150.00099 * 8 7 6 39 39 H 0.97000 * 120.00239 * 179.97438 * 12 11 9 40 40 H 1.07998 * 123.45976 * 0.02562 * 20 19 17 41 41 H 1.07994 * 124.71290 * 180.02562 * 21 20 19 42 42 H 1.07992 * 124.58975 * 359.97438 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.6352 2.1265 1.3074 5 6 2.1266 3.5755 1.2983 6 6 3.5648 1.4443 -0.1257 7 7 3.9589 0.6609 -1.2992 8 6 4.0709 -0.7966 -1.2029 9 6 5.4745 -1.1669 -0.7977 10 1 6.2096 -0.3939 -0.6292 11 6 5.8200 -2.4926 -0.6422 12 7 7.0449 -2.8158 -0.2891 13 14 4.5487 -3.8297 -0.9343 14 1 4.5853 -4.2448 -2.3596 15 1 4.8522 -4.9987 -0.0703 16 1 3.1976 -3.3086 -0.6052 17 6 4.2186 1.2810 -2.4672 18 8 4.4439 0.6256 -3.4668 19 6 4.2296 2.7514 -2.5333 20 6 5.1536 3.5050 -3.3484 21 6 4.9808 4.8179 -3.2528 22 16 3.6625 5.1882 -2.1549 23 6 3.3703 3.5400 -1.8335 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6053 1.9816 -0.8418 30 1 0.5496 2.1117 1.4043 31 1 2.0823 1.5965 2.1484 32 1 1.6751 4.1071 0.4606 33 1 1.8432 4.0612 2.2321 34 1 3.2117 3.5905 1.1958 35 1 4.0037 1.0038 0.7695 36 1 3.9189 2.4692 -0.2374 37 1 3.3678 -1.1665 -0.4566 38 1 3.8423 -1.2433 -2.1705 39 1 7.2879 -3.7484 -0.1793 40 1 5.9072 3.0475 -3.9722 41 1 5.5671 5.5554 -3.7806 42 1 2.6036 3.1715 -1.1682 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104543781.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:15 Heat of formation + Delta-G solvation = -20.582323 kcal Electronic energy + Delta-G solvation = -22768.471032 eV Core-core repulsion = 19646.719374 eV Total energy + Delta-G solvation = -3121.751658 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.42666 -38.69877 -37.84581 -35.89038 -34.59060 -32.91242 -31.44498 -29.91647 -28.81863 -26.15497 -25.37835 -24.35619 -23.32606 -21.58577 -21.32511 -19.50529 -19.18073 -18.69967 -17.88167 -17.09683 -16.41832 -16.18384 -15.77322 -15.41563 -15.06315 -14.85321 -14.64359 -14.47883 -14.27551 -13.99454 -13.79021 -13.67333 -13.52602 -13.20300 -12.93680 -12.88591 -12.62216 -12.60000 -12.32942 -12.09379 -12.03808 -11.98100 -11.76574 -11.41774 -11.39573 -11.18199 -10.83230 -10.81039 -9.91268 -9.50972 -9.22705 -8.37222 -6.41974 -0.14733 0.66268 0.93458 1.11241 1.28113 1.32767 1.40831 2.01367 2.27238 2.41604 2.96841 3.66431 3.74685 3.79905 3.91209 4.06730 4.31199 4.36578 4.36837 4.43117 4.51095 4.60393 4.66138 4.68770 4.81842 4.85302 4.88802 4.91775 4.96182 5.06485 5.12447 5.18705 5.26634 5.28765 5.29901 5.38113 5.44993 5.48849 5.52421 5.63306 6.20866 6.58311 6.60329 7.15906 7.31530 8.79906 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.013789 B = 0.006255 C = 0.004871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.060307 B = 4475.421273 C = 5747.210020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.136 4.136 3 C -0.101 4.101 4 C -0.113 4.113 5 C -0.163 4.163 6 C 0.094 3.906 7 N -0.584 5.584 8 C 0.221 3.779 9 C -0.539 4.539 10 H 0.026 0.974 11 C 0.015 3.985 12 N -0.943 5.943 13 Si 0.942 3.058 14 H -0.277 1.277 15 H -0.271 1.271 16 H -0.237 1.237 17 C 0.557 3.443 18 O -0.596 6.596 19 C -0.176 4.176 20 C -0.122 4.122 21 C -0.222 4.222 22 S 0.252 5.748 23 C -0.232 4.232 24 H 0.051 0.949 25 H 0.076 0.924 26 H 0.054 0.946 27 H 0.045 0.955 28 H 0.060 0.940 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.050 0.950 35 H 0.069 0.931 36 H 0.102 0.898 37 H 0.067 0.933 38 H 0.014 0.986 39 H 0.269 0.731 40 H 0.132 0.868 41 H 0.200 0.800 42 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.969 18.569 2.913 24.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.173 4.173 3 C -0.121 4.121 4 C -0.151 4.151 5 C -0.220 4.220 6 C -0.028 4.028 7 N -0.312 5.312 8 C 0.100 3.900 9 C -0.578 4.578 10 H 0.045 0.955 11 C -0.184 4.184 12 N -0.583 5.583 13 Si 0.764 3.236 14 H -0.203 1.203 15 H -0.196 1.196 16 H -0.160 1.160 17 C 0.346 3.654 18 O -0.479 6.479 19 C -0.194 4.194 20 C -0.152 4.152 21 C -0.357 4.357 22 S 0.518 5.482 23 C -0.370 4.370 24 H 0.070 0.930 25 H 0.095 0.905 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.079 0.921 29 H 0.095 0.905 30 H 0.105 0.895 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.120 0.880 37 H 0.084 0.916 38 H 0.032 0.968 39 H 0.078 0.922 40 H 0.150 0.850 41 H 0.217 0.783 42 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -15.390 19.420 2.967 24.956 hybrid contribution 1.273 -2.836 -0.878 3.230 sum -14.117 16.584 2.089 21.879 Atomic orbital electron populations 1.21777 0.93908 1.01862 1.02569 1.21847 0.97448 0.96452 1.01557 1.21726 0.93533 0.96880 0.99915 1.21590 1.02348 0.95997 0.95183 1.21972 1.01250 0.95762 1.03028 1.22266 0.95881 0.97036 0.87647 1.47788 1.65253 1.08000 1.10152 1.19600 0.95738 0.77824 0.96883 1.21583 0.96549 0.92852 1.46810 0.95544 1.25800 0.97568 1.01050 0.93950 1.70043 1.20372 1.18974 1.48910 0.85801 0.80597 0.78624 0.78563 1.20252 1.19566 1.15952 1.18377 0.76225 0.87854 0.82991 1.90697 1.52293 1.68297 1.36602 1.20267 1.02282 0.92642 1.04166 1.21113 1.00161 0.93613 1.00268 1.25837 1.04812 0.98741 1.06339 1.82516 1.27037 1.00220 1.38459 1.26649 1.05162 1.00655 1.04490 0.93007 0.90519 0.92698 0.93625 0.92145 0.90487 0.89471 0.91678 0.91877 0.90794 0.93061 0.91298 0.88015 0.91577 0.96793 0.92192 0.84978 0.78289 0.78700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 9.67 71.98 0.70 -2.36 16 2 C -0.14 -3.82 4.00 30.59 0.12 -3.70 16 3 C -0.10 -2.52 1.66 -10.79 -0.02 -2.53 16 4 C -0.11 -2.00 5.23 30.59 0.16 -1.84 16 5 C -0.16 -2.38 8.86 71.98 0.64 -1.74 16 6 C 0.09 3.08 4.08 86.38 0.35 3.43 16 7 N -0.58 -25.63 2.20 -830.29 -1.82 -27.45 16 8 C 0.22 11.27 2.95 85.63 0.25 11.53 16 9 C -0.54 -32.94 9.94 25.60 0.25 -32.68 16 10 H 0.03 1.81 8.06 -2.91 -0.02 1.78 16 11 C 0.01 0.88 5.47 84.65 0.46 1.34 16 12 N -0.94 -60.76 13.96 21.45 0.30 -60.46 16 13 Si 0.94 45.47 27.47 68.60 1.88 47.36 16 14 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 15 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 16 H -0.24 -10.24 6.54 99.48 0.65 -9.59 16 17 C 0.56 25.67 7.48 86.60 0.65 26.32 16 18 O -0.60 -33.12 16.57 -4.15 -0.07 -33.19 16 19 C -0.18 -6.13 5.41 -19.87 -0.11 -6.24 16 20 C -0.12 -3.79 10.29 22.67 0.23 -3.56 16 21 C -0.22 -4.68 11.12 66.64 0.74 -3.94 16 22 S 0.25 4.33 23.02 -56.49 -1.30 3.03 16 23 C -0.23 -5.85 8.35 67.30 0.56 -5.29 16 24 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.08 1.27 6.55 -2.39 -0.02 1.26 16 26 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 27 H 0.05 1.60 5.24 -2.39 -0.01 1.59 16 28 H 0.06 1.76 7.91 -2.39 -0.02 1.74 16 29 H 0.08 1.81 6.25 -2.38 -0.01 1.80 16 30 H 0.09 1.23 6.53 -2.39 -0.02 1.22 16 31 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.06 0.77 7.44 -2.39 -0.02 0.76 16 33 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.05 0.85 6.58 -2.38 -0.02 0.84 16 35 H 0.07 2.44 8.12 -2.39 -0.02 2.42 16 36 H 0.10 2.96 3.41 -2.38 -0.01 2.95 16 37 H 0.07 3.07 4.32 -2.39 -0.01 3.06 16 38 H 0.01 0.78 6.78 -2.39 -0.02 0.76 16 39 H 0.27 16.06 8.31 -92.71 -0.77 15.29 16 40 H 0.13 4.41 8.06 -2.91 -0.02 4.39 16 41 H 0.20 2.75 8.06 -2.91 -0.02 2.72 16 42 H 0.20 4.36 1.91 -2.91 -0.01 4.35 16 Total: -1.00 -79.88 334.56 4.96 -74.92 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: 0.98 Total: 17.07 kcal Atomic # 6 Polarization: -26.26 SS G_CDS: 5.00 Total: -21.27 kcal Atomic # 7 Polarization: -86.39 SS G_CDS: -1.53 Total: -87.92 kcal Atomic # 8 Polarization: -33.12 SS G_CDS: -0.07 Total: -33.19 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.88 Total: 47.36 kcal Atomic # 16 Polarization: 4.33 SS G_CDS: -1.30 Total: 3.03 kcal Total: -79.88 4.96 -74.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104543781.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.337 kcal (2) G-P(sol) polarization free energy of solvation -79.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds