Wall clock time and date at job start Tue Mar 31 2020 06:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37474 * 122.44518 * 2 1 4 4 C 1.36652 * 113.29608 * 180.02562 * 3 2 1 5 5 C 1.46576 * 125.46123 * 180.02562 * 4 3 2 6 6 O 1.21708 * 119.99481 * 351.87274 * 5 4 3 7 7 N 1.34770 * 120.00466 * 171.87734 * 5 4 3 8 8 C 1.46502 * 119.99964 * 2.15721 * 7 5 4 9 9 C 1.50704 * 109.46949 * 82.42586 * 8 7 5 10 10 H 1.07998 * 120.00455 * 0.02562 * 9 8 7 11 11 C 1.37875 * 119.99657 * 179.97438 * 9 8 7 12 12 N 1.31511 * 120.00530 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99892 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.46998 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.47155 * 120.00132 * 13 11 9 16 16 H 1.48499 * 109.47216 * 240.00091 * 13 11 9 17 17 C 1.46497 * 120.00558 * 182.15573 * 7 5 4 18 18 C 1.53001 * 109.47402 * 95.50104 * 17 7 5 19 19 C 1.52994 * 109.47360 * 178.66923 * 18 17 7 20 20 C 1.52998 * 109.47066 * 298.67733 * 18 17 7 21 21 S 1.75839 * 109.08162 * 359.97438 * 4 3 2 22 22 C 1.33810 * 122.45181 * 180.02562 * 2 1 3 23 23 C 1.50705 * 124.52058 * 0.24476 * 22 2 1 24 24 H 1.09002 * 109.46713 * 269.97242 * 1 2 3 25 25 H 1.08996 * 109.47333 * 29.97043 * 1 2 3 26 26 H 1.09000 * 109.47057 * 149.97879 * 1 2 3 27 27 H 1.07997 * 123.35622 * 0.02562 * 3 2 1 28 28 H 1.08999 * 109.47635 * 202.42960 * 8 7 5 29 29 H 1.09000 * 109.46947 * 322.43158 * 8 7 5 30 30 H 0.96999 * 120.00762 * 179.97438 * 12 11 9 31 31 H 1.09002 * 109.47573 * 215.50756 * 17 7 5 32 32 H 1.09002 * 109.47094 * 335.50609 * 17 7 5 33 33 H 1.09007 * 109.46622 * 58.67338 * 18 17 7 34 34 H 1.09007 * 109.46915 * 60.00593 * 19 18 17 35 35 H 1.09001 * 109.47383 * 180.02562 * 19 18 17 36 36 H 1.08998 * 109.47751 * 300.00303 * 19 18 17 37 37 H 1.09003 * 109.47046 * 305.06242 * 20 18 17 38 38 H 1.08993 * 109.47546 * 65.06567 * 20 18 17 39 39 H 1.09003 * 109.46587 * 185.06611 * 20 18 17 40 40 H 1.09001 * 109.46566 * 179.72066 * 23 22 2 41 41 H 1.09000 * 109.46918 * 299.71538 * 23 22 2 42 42 H 1.08998 * 109.47059 * 59.72390 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2446 1.1601 0.0000 4 6 3.5937 0.9429 -0.0006 5 6 4.6231 1.9863 -0.0002 6 8 4.3075 3.1524 -0.1483 7 7 5.9189 1.6546 0.1641 8 6 6.3038 0.2471 0.2950 9 6 6.4110 -0.3737 -1.0741 10 1 6.2127 0.2208 -1.9537 11 6 6.7633 -1.7004 -1.2037 12 7 7.0053 -2.4242 -0.1327 13 14 6.8968 -2.4698 -2.9007 14 1 6.5775 -1.4508 -3.9326 15 1 8.2794 -2.9695 -3.1102 16 1 5.9402 -3.6005 -3.0082 17 6 6.9428 2.7013 0.2118 18 6 7.2393 3.0588 1.6696 19 6 8.3322 4.1282 1.7205 20 6 5.9688 3.5959 2.3316 21 16 3.8970 -0.7892 -0.0003 22 6 2.2250 -1.1291 -0.0005 23 6 1.6355 -2.5161 -0.0064 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3634 0.8902 -0.5133 26 1 -0.3633 -0.8898 -0.5142 27 1 1.8019 2.1452 0.0004 28 1 7.2668 0.1793 0.8011 29 1 5.5496 -0.2832 0.8763 30 1 7.2527 -3.3577 -0.2238 31 1 7.8535 2.3409 -0.2664 32 1 6.5825 3.5861 -0.3131 33 1 7.5771 2.1686 2.2004 34 1 7.9944 5.0184 1.1897 35 1 8.5437 4.3825 2.7591 36 1 9.2373 3.7456 1.2489 37 1 5.5806 4.4312 1.7487 38 1 5.2201 2.8050 2.3762 39 1 6.2006 3.9342 3.3415 40 1 2.4393 -3.2524 -0.0106 41 1 1.0214 -2.6536 0.8835 42 1 1.0198 -2.6454 -0.8965 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000105738990.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:48 Heat of formation + Delta-G solvation = -27.045795 kcal Electronic energy + Delta-G solvation = -22524.736624 eV Core-core repulsion = 19402.704689 eV Total energy + Delta-G solvation = -3122.031935 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.26908 -37.65254 -35.79941 -34.31989 -32.46498 -31.46911 -29.12470 -27.84259 -26.83379 -26.41806 -24.57934 -23.26477 -22.29203 -19.93497 -18.86967 -17.51491 -17.15881 -16.70563 -15.58743 -15.23980 -14.69325 -14.53720 -14.18307 -13.94195 -13.89864 -13.02685 -12.98424 -12.53552 -12.53101 -12.45072 -12.25885 -12.08855 -12.01359 -11.90458 -11.52602 -11.24336 -11.19289 -11.12021 -11.03266 -10.85084 -10.79078 -10.57084 -10.38781 -10.13961 -9.86950 -9.18361 -9.07349 -8.76721 -7.96691 -7.61523 -7.39474 -6.37014 -4.39357 1.40337 2.58908 3.02039 3.06661 3.14519 3.22550 3.27818 3.90930 4.04244 4.22616 4.97007 5.22442 5.28980 5.38420 5.43724 5.51310 5.62979 5.75819 5.84010 5.89490 5.91278 5.99086 6.00147 6.03000 6.13095 6.17124 6.20903 6.27647 6.33540 6.38152 6.39780 6.52936 6.66204 6.69221 6.77542 6.93245 7.06095 7.22532 7.43384 7.59846 7.77713 8.23744 8.62355 9.00620 9.21552 10.67013 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.010819 B = 0.008251 C = 0.005197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2587.378824 B = 3392.706026 C = 5386.247432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.145 4.145 3 C -0.076 4.076 4 C -0.293 4.293 5 C 0.592 3.408 6 O -0.566 6.566 7 N -0.596 5.596 8 C 0.227 3.773 9 C -0.536 4.536 10 H 0.069 0.931 11 C 0.076 3.924 12 N -0.877 5.877 13 Si 0.890 3.110 14 H -0.268 1.268 15 H -0.279 1.279 16 H -0.278 1.278 17 C 0.126 3.874 18 C -0.113 4.113 19 C -0.141 4.141 20 C -0.137 4.137 21 S 0.397 5.603 22 C -0.300 4.300 23 C -0.073 4.073 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.133 0.867 28 H 0.052 0.948 29 H 0.042 0.958 30 H 0.269 0.731 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.050 0.950 39 H 0.043 0.957 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.096 2.563 3.051 5.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.157 4.157 3 C -0.111 4.111 4 C -0.414 4.414 5 C 0.382 3.618 6 O -0.449 6.449 7 N -0.325 5.325 8 C 0.105 3.895 9 C -0.578 4.578 10 H 0.087 0.913 11 C -0.130 4.130 12 N -0.514 5.514 13 Si 0.716 3.284 14 H -0.193 1.193 15 H -0.205 1.205 16 H -0.203 1.203 17 C 0.002 3.998 18 C -0.133 4.133 19 C -0.199 4.199 20 C -0.194 4.194 21 S 0.675 5.325 22 C -0.420 4.420 23 C -0.131 4.131 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.151 0.849 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.916 2.001 3.053 4.672 hybrid contribution -1.204 0.221 -0.925 1.534 sum -4.121 2.222 2.129 5.143 Atomic orbital electron populations 1.20373 0.91520 1.01516 1.01023 1.18317 0.96414 0.91663 1.09327 1.20200 0.91226 0.98635 1.01001 1.24624 0.97460 0.99517 1.19828 1.16969 0.81886 0.86922 0.76041 1.90686 1.81967 1.19332 1.52866 1.47978 1.05327 1.09046 1.70158 1.19649 0.96881 0.75188 0.97814 1.21560 1.47684 0.95903 0.92624 0.91283 1.24896 0.94074 0.96783 0.97264 1.69913 1.44560 1.08593 1.28285 0.86533 0.78158 0.79596 0.84100 1.19265 1.20523 1.20346 1.21392 0.91436 0.91530 0.95418 1.21511 0.95841 0.98602 0.97299 1.21743 0.98188 0.98631 1.01315 1.21747 0.97219 1.01338 0.99141 1.85977 0.92098 0.95026 1.59396 1.25598 1.07496 0.99112 1.09761 1.20154 1.00143 0.91248 1.01514 0.92450 0.92493 0.92468 0.84936 0.93017 0.94173 0.92084 0.90652 0.90426 0.91104 0.92766 0.92918 0.92684 0.92273 0.93057 0.93780 0.91950 0.91786 0.91812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.20 9.84 36.01 0.35 -0.85 16 2 C -0.14 -2.59 5.78 -106.45 -0.62 -3.21 16 3 C -0.08 -1.50 9.81 -40.43 -0.40 -1.89 16 4 C -0.29 -6.31 6.23 -36.79 -0.23 -6.54 16 5 C 0.59 13.27 6.19 -12.90 -0.08 13.19 16 6 O -0.57 -13.37 15.38 5.18 0.08 -13.29 16 7 N -0.60 -12.64 2.21 -176.64 -0.39 -13.03 16 8 C 0.23 5.15 4.77 -5.19 -0.02 5.13 16 9 C -0.54 -13.02 6.98 -34.44 -0.24 -13.26 16 10 H 0.07 1.77 7.81 -52.49 -0.41 1.36 16 11 C 0.08 1.83 5.03 -17.82 -0.09 1.74 16 12 N -0.88 -21.78 13.29 55.43 0.74 -21.04 16 13 Si 0.89 19.42 29.54 -169.99 -5.02 14.40 16 14 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 15 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 16 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 17 C 0.13 2.30 4.97 -4.04 -0.02 2.28 16 18 C -0.11 -1.78 3.15 -90.62 -0.29 -2.07 16 19 C -0.14 -1.80 9.19 37.15 0.34 -1.46 16 20 C -0.14 -2.24 8.04 37.16 0.30 -1.94 16 21 S 0.40 8.29 15.82 -107.50 -1.70 6.59 16 22 C -0.30 -5.50 6.28 -35.86 -0.23 -5.73 16 23 C -0.07 -1.08 9.38 36.01 0.34 -0.75 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 26 H 0.06 0.73 7.26 -51.93 -0.38 0.35 16 27 H 0.13 2.49 8.06 -52.49 -0.42 2.07 16 28 H 0.05 1.21 8.02 -51.93 -0.42 0.79 16 29 H 0.04 0.96 4.47 -22.20 -0.10 0.86 16 30 H 0.27 6.38 8.31 -40.82 -0.34 6.04 16 31 H 0.08 1.33 8.11 -51.93 -0.42 0.91 16 32 H 0.08 1.46 7.24 -51.93 -0.38 1.08 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 1.01 7.85 -51.93 -0.41 0.60 16 38 H 0.05 0.95 6.93 -51.93 -0.36 0.59 16 39 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.93 8.11 -51.93 -0.42 0.51 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.06 0.86 7.88 -51.93 -0.41 0.45 16 LS Contribution 348.38 15.07 5.25 5.25 Total: -1.00 -26.46 348.38 -8.56 -35.02 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -6.64 Total: 1.44 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: -0.87 Total: -15.34 kcal Atomic # 7 Polarization: -34.42 SS G_CDS: 0.35 Total: -34.07 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: 0.08 Total: -13.29 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.02 Total: 14.40 kcal Atomic # 16 Polarization: 8.29 SS G_CDS: -1.70 Total: 6.59 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -26.46 -8.56 -35.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000105738990.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.976 kcal (2) G-P(sol) polarization free energy of solvation -26.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds