Wall clock time and date at job start Tue Mar 31 2020 06:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37474 * 122.44518 * 2 1 4 4 C 1.36652 * 113.29608 * 180.02562 * 3 2 1 5 5 C 1.46576 * 125.46123 * 180.02562 * 4 3 2 6 6 O 1.21708 * 119.99481 * 351.87274 * 5 4 3 7 7 N 1.34770 * 120.00466 * 171.87734 * 5 4 3 8 8 C 1.46502 * 119.99964 * 2.15721 * 7 5 4 9 9 C 1.50704 * 109.46949 * 82.42586 * 8 7 5 10 10 H 1.07998 * 120.00455 * 0.02562 * 9 8 7 11 11 C 1.37875 * 119.99657 * 179.97438 * 9 8 7 12 12 N 1.31511 * 120.00530 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99892 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.46998 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.47155 * 120.00132 * 13 11 9 16 16 H 1.48499 * 109.47216 * 240.00091 * 13 11 9 17 17 C 1.46497 * 120.00558 * 182.15573 * 7 5 4 18 18 C 1.53001 * 109.47402 * 95.50104 * 17 7 5 19 19 C 1.52994 * 109.47360 * 178.66923 * 18 17 7 20 20 C 1.52998 * 109.47066 * 298.67733 * 18 17 7 21 21 S 1.75839 * 109.08162 * 359.97438 * 4 3 2 22 22 C 1.33810 * 122.45181 * 180.02562 * 2 1 3 23 23 C 1.50705 * 124.52058 * 0.24476 * 22 2 1 24 24 H 1.09002 * 109.46713 * 269.97242 * 1 2 3 25 25 H 1.08996 * 109.47333 * 29.97043 * 1 2 3 26 26 H 1.09000 * 109.47057 * 149.97879 * 1 2 3 27 27 H 1.07997 * 123.35622 * 0.02562 * 3 2 1 28 28 H 1.08999 * 109.47635 * 202.42960 * 8 7 5 29 29 H 1.09000 * 109.46947 * 322.43158 * 8 7 5 30 30 H 0.96999 * 120.00762 * 179.97438 * 12 11 9 31 31 H 1.09002 * 109.47573 * 215.50756 * 17 7 5 32 32 H 1.09002 * 109.47094 * 335.50609 * 17 7 5 33 33 H 1.09007 * 109.46622 * 58.67338 * 18 17 7 34 34 H 1.09007 * 109.46915 * 60.00593 * 19 18 17 35 35 H 1.09001 * 109.47383 * 180.02562 * 19 18 17 36 36 H 1.08998 * 109.47751 * 300.00303 * 19 18 17 37 37 H 1.09003 * 109.47046 * 305.06242 * 20 18 17 38 38 H 1.08993 * 109.47546 * 65.06567 * 20 18 17 39 39 H 1.09003 * 109.46587 * 185.06611 * 20 18 17 40 40 H 1.09001 * 109.46566 * 179.72066 * 23 22 2 41 41 H 1.09000 * 109.46918 * 299.71538 * 23 22 2 42 42 H 1.08998 * 109.47059 * 59.72390 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2446 1.1601 0.0000 4 6 3.5937 0.9429 -0.0006 5 6 4.6231 1.9863 -0.0002 6 8 4.3075 3.1524 -0.1483 7 7 5.9189 1.6546 0.1641 8 6 6.3038 0.2471 0.2950 9 6 6.4110 -0.3737 -1.0741 10 1 6.2127 0.2208 -1.9537 11 6 6.7633 -1.7004 -1.2037 12 7 7.0053 -2.4242 -0.1327 13 14 6.8968 -2.4698 -2.9007 14 1 6.5775 -1.4508 -3.9326 15 1 8.2794 -2.9695 -3.1102 16 1 5.9402 -3.6005 -3.0082 17 6 6.9428 2.7013 0.2118 18 6 7.2393 3.0588 1.6696 19 6 8.3322 4.1282 1.7205 20 6 5.9688 3.5959 2.3316 21 16 3.8970 -0.7892 -0.0003 22 6 2.2250 -1.1291 -0.0005 23 6 1.6355 -2.5161 -0.0064 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3634 0.8902 -0.5133 26 1 -0.3633 -0.8898 -0.5142 27 1 1.8019 2.1452 0.0004 28 1 7.2668 0.1793 0.8011 29 1 5.5496 -0.2832 0.8763 30 1 7.2527 -3.3577 -0.2238 31 1 7.8535 2.3409 -0.2664 32 1 6.5825 3.5861 -0.3131 33 1 7.5771 2.1686 2.2004 34 1 7.9944 5.0184 1.1897 35 1 8.5437 4.3825 2.7591 36 1 9.2373 3.7456 1.2489 37 1 5.5806 4.4312 1.7487 38 1 5.2201 2.8050 2.3762 39 1 6.2006 3.9342 3.3415 40 1 2.4393 -3.2524 -0.0106 41 1 1.0214 -2.6536 0.8835 42 1 1.0198 -2.6454 -0.8965 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000105738990.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:48 Heat of formation + Delta-G solvation = -38.797863 kcal Electronic energy + Delta-G solvation = -22525.246232 eV Core-core repulsion = 19402.704689 eV Total energy + Delta-G solvation = -3122.541543 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.94115 -39.12128 -37.35783 -35.94782 -34.23954 -32.88819 -30.36403 -29.56852 -28.16909 -27.82239 -25.98969 -25.05656 -23.79852 -21.31851 -20.41028 -19.06570 -18.84595 -18.51574 -17.22654 -16.76572 -16.42367 -16.17400 -15.56552 -15.38575 -15.19809 -14.56755 -14.44278 -14.27460 -13.88603 -13.84149 -13.59637 -13.53587 -13.30849 -13.12632 -12.86316 -12.81982 -12.72529 -12.53692 -12.46809 -12.40298 -12.27077 -12.08573 -11.88175 -11.65855 -11.55564 -10.93712 -10.64826 -10.58607 -9.62999 -9.18015 -8.99096 -8.23146 -6.30627 -0.17017 0.99196 1.36951 1.44011 1.50972 1.51990 1.57369 2.25368 2.36443 2.45098 3.08289 3.76117 3.96634 4.04297 4.10494 4.17791 4.37538 4.46297 4.63477 4.63789 4.70506 4.73347 4.76143 4.79078 4.81185 4.87224 4.93609 4.99056 5.03910 5.08546 5.11263 5.15361 5.18904 5.20834 5.39436 5.44134 5.60338 5.64420 5.79981 5.82419 5.92687 6.47116 6.73834 7.24900 7.35383 8.80831 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.010819 B = 0.008251 C = 0.005197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2587.378824 B = 3392.706026 C = 5386.247432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.148 4.148 3 C -0.072 4.072 4 C -0.321 4.321 5 C 0.586 3.414 6 O -0.588 6.588 7 N -0.596 5.596 8 C 0.238 3.762 9 C -0.542 4.542 10 H 0.049 0.951 11 C 0.050 3.950 12 N -0.896 5.896 13 Si 0.933 3.067 14 H -0.277 1.277 15 H -0.275 1.275 16 H -0.270 1.270 17 C 0.120 3.880 18 C -0.108 4.108 19 C -0.134 4.134 20 C -0.129 4.129 21 S 0.345 5.655 22 C -0.287 4.287 23 C -0.074 4.074 24 H 0.073 0.927 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.139 0.861 28 H 0.040 0.960 29 H 0.039 0.961 30 H 0.273 0.727 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.047 0.953 38 H 0.022 0.978 39 H 0.069 0.931 40 H 0.058 0.942 41 H 0.088 0.912 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.267 2.077 3.245 6.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.160 4.160 3 C -0.107 4.107 4 C -0.442 4.442 5 C 0.376 3.624 6 O -0.473 6.473 7 N -0.325 5.325 8 C 0.115 3.885 9 C -0.583 4.583 10 H 0.067 0.933 11 C -0.154 4.154 12 N -0.533 5.533 13 Si 0.759 3.241 14 H -0.201 1.201 15 H -0.200 1.200 16 H -0.196 1.196 17 C -0.002 4.002 18 C -0.127 4.127 19 C -0.191 4.191 20 C -0.187 4.187 21 S 0.622 5.378 22 C -0.406 4.406 23 C -0.132 4.132 24 H 0.092 0.908 25 H 0.085 0.915 26 H 0.093 0.907 27 H 0.156 0.844 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.041 0.959 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.106 0.894 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.055 1.517 3.249 5.413 hybrid contribution -0.966 0.386 -0.965 1.419 sum -5.022 1.903 2.285 5.836 Atomic orbital electron populations 1.20456 0.88204 1.02974 1.02533 1.18711 0.98692 0.90557 1.08003 1.20518 0.90807 0.99795 0.99613 1.24687 0.98080 0.99438 1.22020 1.17188 0.82394 0.86973 0.75802 1.90649 1.82317 1.20047 1.54242 1.48030 1.05685 1.09114 1.69649 1.19432 0.96152 0.75878 0.97027 1.21460 1.48262 0.96117 0.92416 0.93304 1.25307 0.93759 0.96860 0.99465 1.69958 1.45081 1.08882 1.29379 0.85865 0.78371 0.78822 0.81060 1.20148 1.19995 1.19557 1.21592 0.90715 0.90504 0.97413 1.21468 0.96708 0.99460 0.95072 1.21694 0.97130 0.97519 1.02788 1.21669 0.96610 0.99887 1.00507 1.85971 0.95070 0.95345 1.61456 1.25862 1.05569 1.01135 1.08059 1.20301 1.00514 0.88745 1.03618 0.90796 0.91482 0.90663 0.84359 0.94218 0.94407 0.91775 0.90407 0.91108 0.91743 0.92312 0.91029 0.91813 0.93342 0.95874 0.91223 0.92266 0.89358 0.89717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.03 9.84 71.24 0.70 -1.33 16 2 C -0.15 -5.01 5.78 -21.05 -0.12 -5.13 16 3 C -0.07 -2.80 9.81 21.72 0.21 -2.58 16 4 C -0.32 -14.13 6.23 24.08 0.15 -13.98 16 5 C 0.59 27.16 6.19 86.42 0.54 27.70 16 6 O -0.59 -28.62 15.38 -4.37 -0.07 -28.69 16 7 N -0.60 -26.24 2.21 -830.98 -1.84 -28.08 16 8 C 0.24 11.18 4.77 85.63 0.41 11.59 16 9 C -0.54 -27.01 6.98 25.60 0.18 -26.83 16 10 H 0.05 2.59 7.81 -2.91 -0.02 2.57 16 11 C 0.05 2.45 5.03 84.65 0.43 2.88 16 12 N -0.90 -44.78 13.29 21.45 0.28 -44.50 16 13 Si 0.93 39.74 29.54 68.60 2.03 41.77 16 14 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 15 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 16 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 17 C 0.12 4.52 4.97 86.38 0.43 4.95 16 18 C -0.11 -3.39 3.15 -10.80 -0.03 -3.43 16 19 C -0.13 -3.20 9.19 71.98 0.66 -2.54 16 20 C -0.13 -4.23 8.04 71.98 0.58 -3.66 16 21 S 0.34 14.56 15.82 -56.49 -0.89 13.66 16 22 C -0.29 -10.04 6.28 24.68 0.15 -9.88 16 23 C -0.07 -1.99 9.38 71.24 0.67 -1.32 16 24 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.07 1.52 8.13 -2.39 -0.02 1.50 16 26 H 0.07 1.59 7.26 -2.39 -0.02 1.57 16 27 H 0.14 5.14 8.06 -2.91 -0.02 5.12 16 28 H 0.04 1.93 8.02 -2.39 -0.02 1.91 16 29 H 0.04 1.87 4.47 -21.29 -0.10 1.78 16 30 H 0.27 12.90 8.31 -92.71 -0.77 12.13 16 31 H 0.08 2.83 8.11 -2.39 -0.02 2.81 16 32 H 0.07 2.74 7.24 -2.39 -0.02 2.72 16 33 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 34 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 35 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.05 1.67 7.85 -2.39 -0.02 1.65 16 38 H 0.02 0.86 6.93 -2.39 -0.02 0.84 16 39 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.06 1.64 8.11 -2.39 -0.02 1.62 16 41 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.08 1.97 7.88 -2.39 -0.02 1.95 16 Total: -1.00 -57.39 348.38 5.37 -52.02 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 0.91 Total: 17.37 kcal Atomic # 6 Polarization: -28.51 SS G_CDS: 4.95 Total: -23.56 kcal Atomic # 7 Polarization: -71.02 SS G_CDS: -1.55 Total: -72.57 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -0.07 Total: -28.69 kcal Atomic # 14 Polarization: 39.74 SS G_CDS: 2.03 Total: 41.77 kcal Atomic # 16 Polarization: 14.56 SS G_CDS: -0.89 Total: 13.66 kcal Total: -57.39 5.37 -52.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000105738990.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.224 kcal (2) G-P(sol) polarization free energy of solvation -57.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds