Wall clock time and date at job start Tue Mar 31 2020 06:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50695 * 109.46910 * 2 1 4 4 C 1.37471 * 123.35449 * 265.02492 * 3 2 1 5 5 C 1.33813 * 115.10491 * 179.97438 * 4 3 2 6 6 S 1.70617 * 110.95520 * 0.02562 * 5 4 3 7 7 C 1.36652 * 123.34956 * 84.73200 * 3 2 1 8 8 C 1.46580 * 125.45819 * 0.03239 * 7 3 2 9 9 O 1.21702 * 119.99948 * 351.40726 * 8 7 3 10 10 N 1.34773 * 119.99978 * 171.40915 * 8 7 3 11 11 C 1.46504 * 120.00260 * 2.18367 * 10 8 7 12 12 C 1.50701 * 109.47136 * 82.08952 * 11 10 8 13 13 H 1.07992 * 120.00346 * 359.97438 * 12 11 10 14 14 C 1.37880 * 119.99825 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99833 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 120.00026 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47487 * 89.99744 * 16 14 12 18 18 H 1.48500 * 109.47223 * 209.99751 * 16 14 12 19 19 H 1.48500 * 109.47060 * 329.99679 * 16 14 12 20 20 C 1.46497 * 120.00224 * 182.17767 * 10 8 7 21 21 C 1.53006 * 109.46963 * 84.38678 * 20 10 8 22 22 C 1.53004 * 109.47017 * 65.00174 * 21 20 10 23 23 C 1.52998 * 109.46967 * 185.00225 * 21 20 10 24 24 H 1.09004 * 109.47298 * 60.00143 * 1 2 3 25 25 H 1.09002 * 109.47501 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47235 * 299.99642 * 1 2 3 27 27 H 1.08993 * 109.46906 * 120.00156 * 2 1 3 28 28 H 1.08997 * 109.47235 * 240.00358 * 2 1 3 29 29 H 1.08000 * 122.45028 * 359.94305 * 4 3 2 30 30 H 1.08001 * 124.52905 * 179.97438 * 5 4 3 31 31 H 1.08995 * 109.47187 * 202.09160 * 11 10 8 32 32 H 1.09000 * 109.47016 * 322.09348 * 11 10 8 33 33 H 0.97001 * 119.99907 * 180.02562 * 15 14 12 34 34 H 1.08997 * 109.47463 * 204.38601 * 20 10 8 35 35 H 1.08996 * 109.47139 * 324.38923 * 20 10 8 36 36 H 1.08997 * 109.46970 * 305.00468 * 21 20 10 37 37 H 1.08998 * 109.47179 * 180.02562 * 22 21 20 38 38 H 1.09006 * 109.46885 * 300.00099 * 22 21 20 39 39 H 1.08997 * 109.47011 * 60.00319 * 22 21 20 40 40 H 1.08995 * 109.47543 * 60.00007 * 23 21 20 41 41 H 1.08998 * 109.46856 * 180.02562 * 23 21 20 42 42 H 1.09000 * 109.46995 * 299.99860 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3781 2.1002 -1.1439 5 6 2.8032 3.3545 -0.9527 6 16 2.7924 3.7564 0.7054 7 6 2.1838 2.1640 1.1367 8 6 1.8896 1.7060 2.4976 9 8 1.3286 0.6403 2.6731 10 7 2.2402 2.4651 3.5547 11 6 2.8722 3.7696 3.3423 12 6 1.8113 4.8014 3.0576 13 1 0.7705 4.5142 3.0365 14 6 2.1696 6.1120 2.8230 15 7 3.4372 6.4617 2.8482 16 14 0.8547 7.3911 2.4708 17 1 0.4047 8.0029 3.7469 18 1 1.4136 8.4451 1.5866 19 1 -0.2997 6.7421 1.7989 20 6 1.9892 1.9858 4.9161 21 6 3.1385 1.0770 5.3568 22 6 4.4290 1.8941 5.4468 23 6 2.8177 0.4775 6.7274 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 2.3119 1.6541 -2.1253 30 1 3.1128 4.0231 -1.7424 31 1 3.4259 4.0550 4.2367 32 1 3.5560 3.7085 2.4957 33 1 3.6893 7.3838 2.6835 34 1 1.9185 2.8367 5.5936 35 1 1.0544 1.4257 4.9375 36 1 3.2664 0.2747 4.6302 37 1 5.2478 1.2466 5.7603 38 1 4.6574 2.3212 4.4703 39 1 4.3011 2.6964 6.1734 40 1 1.8984 -0.1045 6.6634 41 1 3.6367 -0.1695 7.0416 42 1 2.6899 1.2799 7.4540 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112010111.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:06 Heat of formation + Delta-G solvation = -24.118051 kcal Electronic energy + Delta-G solvation = -22815.158777 eV Core-core repulsion = 19693.253799 eV Total energy + Delta-G solvation = -3121.904978 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.33887 -37.49626 -35.76850 -34.23110 -32.53084 -32.02819 -28.91139 -27.71939 -26.81614 -25.79011 -24.18760 -23.07449 -21.66086 -20.54943 -19.32176 -17.45490 -17.16390 -16.66159 -15.50269 -15.15446 -14.64610 -14.61368 -14.42864 -13.80700 -13.52395 -13.47101 -12.92828 -12.71899 -12.56780 -12.35147 -12.20874 -12.11482 -11.93475 -11.52376 -11.42435 -11.26364 -11.13285 -10.99514 -10.80644 -10.71950 -10.60320 -10.33297 -10.31537 -10.16029 -9.87051 -9.11989 -9.05300 -8.73265 -8.04412 -7.73792 -7.37480 -6.36791 -4.38912 1.42547 2.62350 3.04929 3.13909 3.16465 3.22231 3.27189 3.92376 4.03239 4.22723 4.97338 5.21001 5.29442 5.43622 5.46592 5.52898 5.67150 5.84852 5.88686 5.96392 5.97971 6.01361 6.05988 6.14688 6.23273 6.26526 6.33332 6.35176 6.41326 6.49822 6.54250 6.67891 6.71564 6.74559 6.80888 6.94299 7.14943 7.18312 7.45297 7.60345 7.78913 8.25280 8.62654 9.02463 9.21702 10.67048 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.010130 B = 0.009016 C = 0.005622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2763.365190 B = 3104.979473 C = 4979.582367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.058 4.058 3 C -0.050 4.050 4 C -0.163 4.163 5 C -0.335 4.335 6 S 0.392 5.608 7 C -0.292 4.292 8 C 0.590 3.410 9 O -0.560 6.560 10 N -0.596 5.596 11 C 0.226 3.774 12 C -0.536 4.536 13 H 0.068 0.932 14 C 0.076 3.924 15 N -0.877 5.877 16 Si 0.889 3.111 17 H -0.276 1.276 18 H -0.281 1.281 19 H -0.268 1.268 20 C 0.130 3.870 21 C -0.112 4.112 22 C -0.145 4.145 23 C -0.141 4.141 24 H 0.043 0.957 25 H 0.047 0.953 26 H 0.062 0.938 27 H 0.082 0.918 28 H 0.055 0.945 29 H 0.117 0.883 30 H 0.145 0.855 31 H 0.055 0.945 32 H 0.041 0.959 33 H 0.270 0.730 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.045 0.955 38 H 0.061 0.939 39 H 0.054 0.946 40 H 0.053 0.947 41 H 0.051 0.949 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.689 -6.353 -0.436 6.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.098 4.098 3 C -0.067 4.067 4 C -0.195 4.195 5 C -0.472 4.472 6 S 0.670 5.330 7 C -0.413 4.413 8 C 0.380 3.620 9 O -0.442 6.442 10 N -0.326 5.326 11 C 0.104 3.896 12 C -0.578 4.578 13 H 0.086 0.914 14 C -0.130 4.130 15 N -0.514 5.514 16 Si 0.716 3.284 17 H -0.202 1.202 18 H -0.207 1.207 19 H -0.193 1.193 20 C 0.007 3.993 21 C -0.132 4.132 22 C -0.202 4.202 23 C -0.199 4.199 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.082 0.918 27 H 0.101 0.899 28 H 0.074 0.926 29 H 0.135 0.865 30 H 0.163 0.837 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.064 0.936 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.975 -5.355 0.385 5.457 hybrid contribution -0.953 -0.199 -1.305 1.628 sum 0.022 -5.554 -0.920 5.630 Atomic orbital electron populations 1.21589 0.95178 1.00629 1.01767 1.20169 0.95962 0.91732 1.01907 1.19149 0.99738 0.96885 0.90908 1.19493 1.07085 0.94635 0.98267 1.26624 1.08990 1.01333 1.10283 1.85999 1.51537 1.06241 0.89222 1.24561 1.18196 1.01470 0.97082 1.16973 0.78264 0.83499 0.83258 1.90666 1.44251 1.23284 1.86033 1.48002 1.59777 1.20006 1.04790 1.19713 0.93678 0.78394 0.97850 1.21535 0.94136 0.92955 1.49170 0.91364 1.24897 0.95648 0.98164 0.94321 1.69906 1.15405 1.19035 1.47006 0.86588 0.82015 0.81073 0.78733 1.20187 1.20674 1.19286 1.21343 0.97333 0.97593 0.83064 1.21504 0.96071 0.98423 0.97193 1.21864 0.96390 0.99538 1.02444 1.21739 1.01132 1.00423 0.96557 0.93783 0.93389 0.91850 0.89922 0.92644 0.86504 0.83689 0.92736 0.94214 0.92033 0.90425 0.91074 0.91122 0.93563 0.92033 0.92701 0.92784 0.92998 0.92757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 9.72 37.16 0.36 -1.83 16 2 C -0.06 -1.01 5.47 -27.89 -0.15 -1.16 16 3 C -0.05 -0.97 5.16 -105.48 -0.54 -1.52 16 4 C -0.16 -2.94 9.96 -41.41 -0.41 -3.36 16 5 C -0.33 -6.14 10.92 29.18 0.32 -5.82 16 6 S 0.39 8.12 15.85 -107.50 -1.70 6.41 16 7 C -0.29 -6.18 6.23 -36.79 -0.23 -6.41 16 8 C 0.59 12.89 7.49 -12.90 -0.10 12.80 16 9 O -0.56 -12.59 13.13 5.19 0.07 -12.52 16 10 N -0.60 -12.38 2.21 -176.64 -0.39 -12.78 16 11 C 0.23 5.03 3.61 -5.19 -0.02 5.01 16 12 C -0.54 -12.89 6.93 -34.44 -0.24 -13.13 16 13 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 14 C 0.08 1.82 5.01 -17.82 -0.09 1.73 16 15 N -0.88 -21.71 13.29 55.43 0.74 -20.97 16 16 Si 0.89 19.37 29.54 -169.99 -5.02 14.35 16 17 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 18 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 19 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 20 C 0.13 2.33 4.77 -4.04 -0.02 2.31 16 21 C -0.11 -1.75 3.09 -90.62 -0.28 -2.03 16 22 C -0.15 -2.21 8.38 37.16 0.31 -1.90 16 23 C -0.14 -1.79 9.19 37.16 0.34 -1.45 16 24 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 1.19 7.21 -51.93 -0.37 0.82 16 27 H 0.08 1.54 6.58 -51.93 -0.34 1.20 16 28 H 0.05 0.82 8.12 -51.93 -0.42 0.40 16 29 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 30 H 0.15 2.32 8.06 -52.49 -0.42 1.90 16 31 H 0.05 1.25 6.97 -51.93 -0.36 0.89 16 32 H 0.04 0.93 4.52 -22.52 -0.10 0.83 16 33 H 0.27 6.40 8.31 -40.82 -0.34 6.07 16 34 H 0.08 1.35 8.02 -51.93 -0.42 0.94 16 35 H 0.07 1.30 7.56 -51.93 -0.39 0.91 16 36 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 1.06 6.47 -51.93 -0.34 0.72 16 39 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 344.08 15.07 5.19 5.19 Total: -1.00 -25.55 344.08 -8.39 -33.95 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -6.52 Total: 3.12 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: -0.75 Total: -16.75 kcal Atomic # 7 Polarization: -34.09 SS G_CDS: 0.35 Total: -33.75 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: 0.07 Total: -12.52 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.02 Total: 14.35 kcal Atomic # 16 Polarization: 8.12 SS G_CDS: -1.70 Total: 6.41 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -25.55 -8.39 -33.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112010111.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.828 kcal (2) G-P(sol) polarization free energy of solvation -25.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds