Wall clock time and date at job start Tue Mar 31 2020 06:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50695 * 109.46910 * 2 1 4 4 C 1.37471 * 123.35449 * 265.02492 * 3 2 1 5 5 C 1.33813 * 115.10491 * 179.97438 * 4 3 2 6 6 S 1.70617 * 110.95520 * 0.02562 * 5 4 3 7 7 C 1.36652 * 123.34956 * 84.73200 * 3 2 1 8 8 C 1.46580 * 125.45819 * 0.03239 * 7 3 2 9 9 O 1.21702 * 119.99948 * 351.40726 * 8 7 3 10 10 N 1.34773 * 119.99978 * 171.40915 * 8 7 3 11 11 C 1.46504 * 120.00260 * 2.18367 * 10 8 7 12 12 C 1.50701 * 109.47136 * 82.08952 * 11 10 8 13 13 H 1.07992 * 120.00346 * 359.97438 * 12 11 10 14 14 C 1.37880 * 119.99825 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99833 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 120.00026 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47487 * 89.99744 * 16 14 12 18 18 H 1.48500 * 109.47223 * 209.99751 * 16 14 12 19 19 H 1.48500 * 109.47060 * 329.99679 * 16 14 12 20 20 C 1.46497 * 120.00224 * 182.17767 * 10 8 7 21 21 C 1.53006 * 109.46963 * 84.38678 * 20 10 8 22 22 C 1.53004 * 109.47017 * 65.00174 * 21 20 10 23 23 C 1.52998 * 109.46967 * 185.00225 * 21 20 10 24 24 H 1.09004 * 109.47298 * 60.00143 * 1 2 3 25 25 H 1.09002 * 109.47501 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47235 * 299.99642 * 1 2 3 27 27 H 1.08993 * 109.46906 * 120.00156 * 2 1 3 28 28 H 1.08997 * 109.47235 * 240.00358 * 2 1 3 29 29 H 1.08000 * 122.45028 * 359.94305 * 4 3 2 30 30 H 1.08001 * 124.52905 * 179.97438 * 5 4 3 31 31 H 1.08995 * 109.47187 * 202.09160 * 11 10 8 32 32 H 1.09000 * 109.47016 * 322.09348 * 11 10 8 33 33 H 0.97001 * 119.99907 * 180.02562 * 15 14 12 34 34 H 1.08997 * 109.47463 * 204.38601 * 20 10 8 35 35 H 1.08996 * 109.47139 * 324.38923 * 20 10 8 36 36 H 1.08997 * 109.46970 * 305.00468 * 21 20 10 37 37 H 1.08998 * 109.47179 * 180.02562 * 22 21 20 38 38 H 1.09006 * 109.46885 * 300.00099 * 22 21 20 39 39 H 1.08997 * 109.47011 * 60.00319 * 22 21 20 40 40 H 1.08995 * 109.47543 * 60.00007 * 23 21 20 41 41 H 1.08998 * 109.46856 * 180.02562 * 23 21 20 42 42 H 1.09000 * 109.46995 * 299.99860 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3781 2.1002 -1.1439 5 6 2.8032 3.3545 -0.9527 6 16 2.7924 3.7564 0.7054 7 6 2.1838 2.1640 1.1367 8 6 1.8896 1.7060 2.4976 9 8 1.3286 0.6403 2.6731 10 7 2.2402 2.4651 3.5547 11 6 2.8722 3.7696 3.3423 12 6 1.8113 4.8014 3.0576 13 1 0.7705 4.5142 3.0365 14 6 2.1696 6.1120 2.8230 15 7 3.4372 6.4617 2.8482 16 14 0.8547 7.3911 2.4708 17 1 0.4047 8.0029 3.7469 18 1 1.4136 8.4451 1.5866 19 1 -0.2997 6.7421 1.7989 20 6 1.9892 1.9858 4.9161 21 6 3.1385 1.0770 5.3568 22 6 4.4290 1.8941 5.4468 23 6 2.8177 0.4775 6.7274 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 2.3119 1.6541 -2.1253 30 1 3.1128 4.0231 -1.7424 31 1 3.4259 4.0550 4.2367 32 1 3.5560 3.7085 2.4957 33 1 3.6893 7.3838 2.6835 34 1 1.9185 2.8367 5.5936 35 1 1.0544 1.4257 4.9375 36 1 3.2664 0.2747 4.6302 37 1 5.2478 1.2466 5.7603 38 1 4.6574 2.3212 4.4703 39 1 4.3011 2.6964 6.1734 40 1 1.8984 -0.1045 6.6634 41 1 3.6367 -0.1695 7.0416 42 1 2.6899 1.2799 7.4540 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112010111.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:05 Heat of formation + Delta-G solvation = -34.983188 kcal Electronic energy + Delta-G solvation = -22815.629925 eV Core-core repulsion = 19693.253799 eV Total energy + Delta-G solvation = -3122.376126 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.95878 -38.98872 -37.29248 -35.83619 -34.22933 -33.45504 -30.41968 -29.45882 -28.00040 -27.26767 -25.70120 -24.81582 -23.07188 -21.99115 -20.75976 -18.99381 -18.89926 -18.42940 -17.04638 -16.76628 -16.33736 -16.07185 -15.97521 -15.23978 -14.89594 -14.88224 -14.42072 -14.27464 -14.10650 -13.97531 -13.65217 -13.62422 -13.09853 -13.01767 -12.95041 -12.74871 -12.64411 -12.58145 -12.19551 -12.16509 -12.03904 -11.91707 -11.68928 -11.58764 -11.56384 -10.79722 -10.66209 -10.51291 -9.65336 -9.33548 -8.98194 -8.21631 -6.28668 -0.12746 1.04099 1.38264 1.44440 1.51355 1.54959 1.65353 2.28578 2.39806 2.47388 3.09875 3.80161 4.02667 4.06784 4.08656 4.19381 4.29655 4.49755 4.60717 4.61474 4.66017 4.69127 4.77950 4.84088 4.90971 4.93556 4.99644 5.01155 5.06579 5.13217 5.16282 5.23575 5.30028 5.40821 5.43927 5.44701 5.62642 5.68709 5.74690 5.87358 5.96767 6.51562 6.77326 7.29025 7.39638 8.81670 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.010130 B = 0.009016 C = 0.005622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2763.365190 B = 3104.979473 C = 4979.582367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.058 4.058 3 C -0.047 4.047 4 C -0.162 4.162 5 C -0.318 4.318 6 S 0.338 5.662 7 C -0.319 4.319 8 C 0.582 3.418 9 O -0.574 6.574 10 N -0.598 5.598 11 C 0.239 3.761 12 C -0.541 4.541 13 H 0.048 0.952 14 C 0.050 3.950 15 N -0.896 5.896 16 Si 0.932 3.068 17 H -0.274 1.274 18 H -0.274 1.274 19 H -0.275 1.275 20 C 0.126 3.874 21 C -0.105 4.105 22 C -0.140 4.140 23 C -0.134 4.134 24 H 0.056 0.944 25 H 0.070 0.930 26 H 0.030 0.970 27 H 0.064 0.936 28 H 0.087 0.913 29 H 0.152 0.848 30 H 0.173 0.827 31 H 0.044 0.956 32 H 0.038 0.962 33 H 0.272 0.728 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.051 0.949 37 H 0.067 0.933 38 H 0.035 0.965 39 H 0.058 0.942 40 H 0.055 0.945 41 H 0.069 0.931 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.688 -7.029 -1.478 7.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.097 4.097 3 C -0.064 4.064 4 C -0.193 4.193 5 C -0.455 4.455 6 S 0.615 5.385 7 C -0.439 4.439 8 C 0.372 3.628 9 O -0.459 6.459 10 N -0.327 5.327 11 C 0.116 3.884 12 C -0.582 4.582 13 H 0.067 0.933 14 C -0.154 4.154 15 N -0.533 5.533 16 Si 0.758 3.242 17 H -0.200 1.200 18 H -0.199 1.199 19 H -0.200 1.200 20 C 0.003 3.997 21 C -0.124 4.124 22 C -0.197 4.197 23 C -0.191 4.191 24 H 0.075 0.925 25 H 0.089 0.911 26 H 0.049 0.951 27 H 0.082 0.918 28 H 0.106 0.894 29 H 0.170 0.830 30 H 0.190 0.810 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.086 0.914 38 H 0.054 0.946 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.088 0.912 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.973 -6.026 -0.626 6.136 hybrid contribution -0.957 -0.076 -1.079 1.444 sum 0.016 -6.103 -1.705 6.336 Atomic orbital electron populations 1.21530 0.94473 1.01845 1.00729 1.20232 0.96472 0.90480 1.02544 1.19628 0.98165 0.97781 0.90806 1.19823 1.05913 0.94325 0.99222 1.26788 1.07788 1.01916 1.09047 1.86052 1.53378 1.07288 0.91800 1.24655 1.19986 1.01881 0.97412 1.17203 0.78195 0.83481 0.83889 1.90639 1.45063 1.23783 1.86372 1.48053 1.59386 1.19502 1.05757 1.19467 0.93131 0.78628 0.97158 1.21470 0.93393 0.93715 1.49634 0.93332 1.25298 0.96819 0.99149 0.94153 1.69955 1.16294 1.19378 1.47713 0.85935 0.80153 0.79557 0.78598 1.19960 1.19914 1.19994 1.21521 0.98173 0.98039 0.81958 1.21418 0.95242 0.97318 0.98459 1.21807 0.96877 0.99897 1.01124 1.21690 1.01899 1.00911 0.94638 0.92512 0.91105 0.95078 0.91789 0.89422 0.83044 0.80994 0.93805 0.94551 0.91837 0.90164 0.91771 0.93059 0.91428 0.94615 0.92274 0.92606 0.91235 0.91660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.98 9.72 71.98 0.70 -3.28 16 2 C -0.06 -1.90 5.47 29.85 0.16 -1.73 16 3 C -0.05 -1.74 5.16 -20.42 -0.11 -1.85 16 4 C -0.16 -5.38 9.96 21.08 0.21 -5.17 16 5 C -0.32 -10.99 10.92 66.81 0.73 -10.26 16 6 S 0.34 14.08 15.85 -56.49 -0.90 13.18 16 7 C -0.32 -13.62 6.23 24.08 0.15 -13.47 16 8 C 0.58 26.17 7.49 86.42 0.65 26.81 16 9 O -0.57 -26.54 13.13 -4.35 -0.06 -26.59 16 10 N -0.60 -25.72 2.21 -830.99 -1.84 -27.56 16 11 C 0.24 11.01 3.61 85.63 0.31 11.31 16 12 C -0.54 -26.70 6.93 25.60 0.18 -26.53 16 13 H 0.05 2.55 7.81 -2.91 -0.02 2.52 16 14 C 0.05 2.42 5.01 84.65 0.42 2.85 16 15 N -0.90 -44.75 13.29 21.45 0.28 -44.46 16 16 Si 0.93 39.72 29.54 68.60 2.03 41.75 16 17 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 18 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 19 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 20 C 0.13 4.63 4.77 86.38 0.41 5.04 16 21 C -0.10 -3.28 3.09 -10.79 -0.03 -3.31 16 22 C -0.14 -4.24 8.38 71.98 0.60 -3.63 16 23 C -0.13 -3.21 9.19 71.98 0.66 -2.55 16 24 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.03 1.15 7.21 -2.39 -0.02 1.13 16 27 H 0.06 2.35 6.58 -2.39 -0.02 2.34 16 28 H 0.09 2.30 8.12 -2.39 -0.02 2.28 16 29 H 0.15 4.00 8.06 -2.91 -0.02 3.97 16 30 H 0.17 4.95 8.06 -2.91 -0.02 4.93 16 31 H 0.04 2.08 6.97 -2.39 -0.02 2.07 16 32 H 0.04 1.78 4.52 -21.09 -0.10 1.68 16 33 H 0.27 12.94 8.31 -92.71 -0.77 12.17 16 34 H 0.08 2.86 8.02 -2.39 -0.02 2.84 16 35 H 0.06 2.42 7.56 -2.39 -0.02 2.40 16 36 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.03 1.25 6.47 -2.38 -0.02 1.23 16 39 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -55.24 344.08 5.48 -49.76 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: 0.91 Total: 19.69 kcal Atomic # 6 Polarization: -30.81 SS G_CDS: 5.05 Total: -25.76 kcal Atomic # 7 Polarization: -70.47 SS G_CDS: -1.56 Total: -72.03 kcal Atomic # 8 Polarization: -26.54 SS G_CDS: -0.06 Total: -26.59 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 2.03 Total: 41.75 kcal Atomic # 16 Polarization: 14.08 SS G_CDS: -0.90 Total: 13.18 kcal Total: -55.24 5.48 -49.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112010111.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.777 kcal (2) G-P(sol) polarization free energy of solvation -55.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds