Wall clock time and date at job start Tue Mar 31 2020 07:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46863 * 2 1 4 4 C 1.52999 * 109.46974 * 60.00124 * 3 2 1 5 5 C 1.52995 * 109.47089 * 300.00143 * 3 2 1 6 6 C 1.50697 * 109.46776 * 179.97438 * 3 2 1 7 7 O 1.21293 * 120.00567 * 0.02562 * 6 3 2 8 8 N 1.34777 * 119.99756 * 179.97438 * 6 3 2 9 9 C 1.40095 * 120.00234 * 185.61096 * 8 6 3 10 10 C 1.38703 * 120.07135 * 34.06838 * 9 8 6 11 11 C 1.38190 * 120.01915 * 179.97438 * 10 9 8 12 12 C 1.38550 * 120.17660 * 0.02873 * 11 10 9 13 13 F 1.35098 * 119.92530 * 179.97438 * 12 11 10 14 14 C 1.38342 * 120.15339 * 359.97438 * 12 11 10 15 15 C 1.38746 * 119.97685 * 359.97438 * 14 12 11 16 16 O 1.35768 * 120.08648 * 180.29603 * 15 14 12 17 17 C 1.34804 * 117.00414 * 354.18978 * 16 15 14 18 18 H 1.08010 * 119.99890 * 354.52046 * 17 16 15 19 19 C 1.38631 * 120.00498 * 174.52045 * 17 16 15 20 20 N 1.31570 * 120.00438 * 180.02562 * 19 17 16 21 21 Si 1.86806 * 119.99884 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.47102 * 90.00303 * 21 19 17 23 23 H 1.48502 * 109.46967 * 210.00364 * 21 19 17 24 24 H 1.48500 * 109.46897 * 330.00083 * 21 19 17 25 25 H 1.08998 * 109.47051 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46985 * 299.99279 * 1 2 3 27 27 H 1.08993 * 109.47402 * 59.99878 * 1 2 3 28 28 H 1.09001 * 109.46653 * 240.00324 * 2 1 3 29 29 H 1.09002 * 109.47279 * 119.99911 * 2 1 3 30 30 H 1.08997 * 109.47134 * 179.97438 * 4 3 2 31 31 H 1.08994 * 109.47511 * 300.00010 * 4 3 2 32 32 H 1.09002 * 109.47291 * 60.00013 * 4 3 2 33 33 H 1.08998 * 109.47678 * 299.99842 * 5 3 2 34 34 H 1.09003 * 109.47502 * 60.00320 * 5 3 2 35 35 H 1.09000 * 109.47356 * 179.97438 * 5 3 2 36 36 H 0.97008 * 120.00325 * 5.61240 * 8 6 3 37 37 H 1.08003 * 119.99404 * 359.97401 * 10 9 8 38 38 H 1.08004 * 119.91352 * 180.02562 * 11 10 9 39 39 H 1.07998 * 120.01586 * 180.02562 * 14 12 11 40 40 H 0.96997 * 120.00470 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2493 5 6 1.5299 2.1637 -1.2492 6 6 3.5470 1.4425 0.0006 7 8 4.1535 0.3921 0.0006 8 7 4.2208 2.6097 0.0002 9 6 5.6168 2.6127 -0.1178 10 6 6.2507 1.6534 -0.8936 11 6 7.6277 1.6576 -1.0097 12 6 8.3791 2.6182 -0.3522 13 9 9.7251 2.6172 -0.4688 14 6 7.7544 3.5783 0.4236 15 6 6.3721 3.5806 0.5437 16 8 5.7562 4.5254 1.2996 17 6 6.5487 5.3584 2.0035 18 1 7.6172 5.2014 2.0205 19 6 5.9923 6.4164 2.7055 20 7 6.7657 7.2296 3.3921 21 14 4.1443 6.6883 2.6755 22 1 3.5157 5.9401 3.7937 23 1 3.8547 8.1372 2.8247 24 1 3.5937 6.2038 1.3843 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.8936 3.1912 1.2495 31 1 0.4400 2.1637 1.2493 32 1 1.8933 1.6499 2.1393 33 1 1.8932 1.6500 -2.1392 34 1 0.4399 2.1638 -1.2492 35 1 1.8928 3.1916 -1.2490 36 1 3.7393 3.4479 0.0817 37 1 5.6680 0.9030 -1.4071 38 1 8.1195 0.9102 -1.6146 39 1 8.3422 4.3262 0.9348 40 1 6.3765 7.9701 3.8830 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120127460.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:56 Heat of formation + Delta-G solvation = -96.673979 kcal Electronic energy + Delta-G solvation = -24212.899189 eV Core-core repulsion = 20521.634773 eV Total energy + Delta-G solvation = -3691.264416 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.31433 -40.57907 -39.08783 -36.91052 -36.03983 -34.27061 -32.54099 -30.52328 -29.62369 -28.29313 -27.50317 -25.49035 -24.95767 -22.98777 -21.82191 -20.94407 -18.94223 -18.32106 -17.98569 -17.01414 -16.61677 -15.66048 -15.38736 -15.08507 -15.01889 -14.91781 -14.34776 -14.14923 -14.02857 -13.85443 -13.57777 -13.32979 -12.92129 -12.63697 -12.45571 -12.36844 -12.22084 -12.01904 -11.86518 -11.65091 -11.46381 -11.34029 -10.97765 -10.83233 -10.72807 -10.70746 -10.50211 -9.80767 -9.75246 -9.36926 -9.03347 -8.01835 -7.28152 -6.57329 -4.24548 1.67142 1.97820 2.84538 3.08429 3.11253 3.19247 3.34142 4.05874 4.18670 4.50464 4.54028 4.63306 4.75070 4.91109 4.94206 5.07582 5.18424 5.32120 5.42012 5.46695 5.50308 5.63840 5.67641 5.69731 5.79622 5.87487 5.88691 5.92176 6.00086 6.10387 6.20210 6.29265 6.35450 6.68785 6.79127 6.81016 6.95641 7.41099 7.59010 7.75070 7.84089 8.40814 8.75461 9.30356 10.49810 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.011225 B = 0.006476 C = 0.004280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2493.870253 B = 4322.791528 C = 6541.175159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.098 4.098 3 C -0.080 4.080 4 C -0.148 4.148 5 C -0.144 4.144 6 C 0.519 3.481 7 O -0.531 6.531 8 N -0.653 5.653 9 C 0.061 3.939 10 C -0.050 4.050 11 C -0.221 4.221 12 C 0.130 3.870 13 F -0.148 7.148 14 C -0.245 4.245 15 C 0.165 3.835 16 O -0.208 6.208 17 C -0.391 4.391 18 H 0.109 0.891 19 C 0.066 3.934 20 N -0.871 5.871 21 Si 0.905 3.095 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.260 1.260 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.410 0.590 37 H 0.136 0.864 38 H 0.125 0.875 39 H 0.149 0.851 40 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.327 -8.663 -7.639 16.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.136 4.136 3 C -0.083 4.083 4 C -0.205 4.205 5 C -0.201 4.201 6 C 0.306 3.694 7 O -0.407 6.407 8 N -0.297 5.297 9 C -0.033 4.033 10 C -0.071 4.071 11 C -0.241 4.241 12 C 0.110 3.890 13 F -0.127 7.127 14 C -0.266 4.266 15 C 0.111 3.889 16 O -0.112 6.112 17 C -0.466 4.466 18 H 0.126 0.874 19 C -0.138 4.138 20 N -0.507 5.507 21 Si 0.730 3.270 22 H -0.197 1.197 23 H -0.206 1.206 24 H -0.184 1.184 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.246 0.754 37 H 0.154 0.846 38 H 0.143 0.857 39 H 0.167 0.833 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.114 -9.136 -7.448 16.201 hybrid contribution -0.410 0.806 0.269 0.943 sum -11.524 -8.330 -7.179 15.929 Atomic orbital electron populations 1.21920 0.95611 1.01688 1.02036 1.21341 0.95269 0.93590 1.03421 1.20802 0.91072 0.98524 0.97944 1.21968 1.01917 1.00428 0.96178 1.21932 1.01942 1.00244 0.95978 1.20629 0.89739 0.83395 0.75649 1.90673 1.70010 1.31178 1.48849 1.43230 1.05140 1.09523 1.71831 1.16873 0.82307 0.99968 1.04112 1.20452 0.93424 0.97221 0.95965 1.20515 0.93715 1.02278 1.07590 1.17451 0.76300 0.96656 0.98580 1.91429 1.30292 1.96242 1.94732 1.20999 0.94649 1.03638 1.07310 1.18541 0.89973 0.90199 0.90234 1.83519 1.36007 1.39413 1.52270 1.20761 0.92565 1.07568 1.25682 0.87407 1.24474 1.00223 0.93984 0.95138 1.69640 1.36058 1.15484 1.29546 0.86204 0.83431 0.77680 0.79681 1.19655 1.20589 1.18426 0.92664 0.92346 0.92407 0.91258 0.91186 0.91904 0.90986 0.91775 0.91978 0.91019 0.91974 0.75391 0.84632 0.85699 0.83306 0.90777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 9.21 37.16 0.34 -0.93 16 2 C -0.10 -1.07 4.28 -26.73 -0.11 -1.18 16 3 C -0.08 -0.94 0.65 -155.66 -0.10 -1.04 16 4 C -0.15 -1.63 8.01 37.16 0.30 -1.34 16 5 C -0.14 -1.38 8.02 37.16 0.30 -1.09 16 6 C 0.52 8.21 6.21 -10.99 -0.07 8.14 16 7 O -0.53 -9.88 13.74 5.55 0.08 -9.80 16 8 N -0.65 -11.08 4.98 -9.72 -0.05 -11.12 16 9 C 0.06 1.20 6.28 -83.45 -0.52 0.68 16 10 C -0.05 -0.92 8.65 -39.43 -0.34 -1.26 16 11 C -0.22 -3.95 10.02 -39.48 -0.40 -4.34 16 12 C 0.13 2.56 7.29 -39.43 -0.29 2.27 16 13 F -0.15 -2.83 17.26 2.25 0.04 -2.80 16 14 C -0.25 -5.31 9.11 -39.36 -0.36 -5.67 16 15 C 0.17 3.64 6.66 -38.94 -0.26 3.38 16 16 O -0.21 -5.01 8.13 0.07 0.00 -5.01 16 17 C -0.39 -10.38 9.90 30.88 0.31 -10.07 16 18 H 0.11 2.99 5.53 -52.48 -0.29 2.70 16 19 C 0.07 1.76 5.49 -17.52 -0.10 1.66 16 20 N -0.87 -24.05 13.96 55.48 0.77 -23.28 16 21 Si 0.90 19.92 28.62 -169.99 -4.86 15.05 16 22 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 23 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 24 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 25 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.45 6.43 -51.93 -0.33 0.12 16 27 H 0.06 0.42 6.43 -51.93 -0.33 0.09 16 28 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 29 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 30 H 0.06 0.73 7.45 -51.93 -0.39 0.34 16 31 H 0.07 0.63 6.43 -51.93 -0.33 0.30 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.56 6.43 -51.93 -0.33 0.22 16 35 H 0.06 0.60 7.70 -51.93 -0.40 0.20 16 36 H 0.41 6.48 7.42 -40.82 -0.30 6.17 16 37 H 0.14 2.35 6.48 -52.48 -0.34 2.01 16 38 H 0.13 1.91 8.06 -52.48 -0.42 1.49 16 39 H 0.15 3.37 5.71 -52.49 -0.30 3.07 16 40 H 0.28 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 330.80 15.07 4.99 4.99 Total: -1.00 -28.72 330.80 -5.36 -34.09 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -5.02 Total: 8.68 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: -1.30 Total: -10.80 kcal Atomic # 7 Polarization: -35.13 SS G_CDS: 0.73 Total: -34.40 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: 0.08 Total: -14.81 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.04 Total: -2.80 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -4.86 Total: 15.05 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.72 -5.36 -34.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120127460.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.589 kcal (2) G-P(sol) polarization free energy of solvation -28.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds