Wall clock time and date at job start Tue Mar 31 2020 07:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46863 * 2 1 4 4 C 1.52999 * 109.46974 * 60.00124 * 3 2 1 5 5 C 1.52995 * 109.47089 * 300.00143 * 3 2 1 6 6 C 1.50697 * 109.46776 * 179.97438 * 3 2 1 7 7 O 1.21293 * 120.00567 * 0.02562 * 6 3 2 8 8 N 1.34777 * 119.99756 * 179.97438 * 6 3 2 9 9 C 1.40095 * 120.00234 * 185.61096 * 8 6 3 10 10 C 1.38703 * 120.07135 * 34.06838 * 9 8 6 11 11 C 1.38190 * 120.01915 * 179.97438 * 10 9 8 12 12 C 1.38550 * 120.17660 * 0.02873 * 11 10 9 13 13 F 1.35098 * 119.92530 * 179.97438 * 12 11 10 14 14 C 1.38342 * 120.15339 * 359.97438 * 12 11 10 15 15 C 1.38746 * 119.97685 * 359.97438 * 14 12 11 16 16 O 1.35768 * 120.08648 * 180.29603 * 15 14 12 17 17 C 1.34804 * 117.00414 * 354.18978 * 16 15 14 18 18 H 1.08010 * 119.99890 * 354.52046 * 17 16 15 19 19 C 1.38631 * 120.00498 * 174.52045 * 17 16 15 20 20 N 1.31570 * 120.00438 * 180.02562 * 19 17 16 21 21 Si 1.86806 * 119.99884 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.47102 * 90.00303 * 21 19 17 23 23 H 1.48502 * 109.46967 * 210.00364 * 21 19 17 24 24 H 1.48500 * 109.46897 * 330.00083 * 21 19 17 25 25 H 1.08998 * 109.47051 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46985 * 299.99279 * 1 2 3 27 27 H 1.08993 * 109.47402 * 59.99878 * 1 2 3 28 28 H 1.09001 * 109.46653 * 240.00324 * 2 1 3 29 29 H 1.09002 * 109.47279 * 119.99911 * 2 1 3 30 30 H 1.08997 * 109.47134 * 179.97438 * 4 3 2 31 31 H 1.08994 * 109.47511 * 300.00010 * 4 3 2 32 32 H 1.09002 * 109.47291 * 60.00013 * 4 3 2 33 33 H 1.08998 * 109.47678 * 299.99842 * 5 3 2 34 34 H 1.09003 * 109.47502 * 60.00320 * 5 3 2 35 35 H 1.09000 * 109.47356 * 179.97438 * 5 3 2 36 36 H 0.97008 * 120.00325 * 5.61240 * 8 6 3 37 37 H 1.08003 * 119.99404 * 359.97401 * 10 9 8 38 38 H 1.08004 * 119.91352 * 180.02562 * 11 10 9 39 39 H 1.07998 * 120.01586 * 180.02562 * 14 12 11 40 40 H 0.96997 * 120.00470 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2493 5 6 1.5299 2.1637 -1.2492 6 6 3.5470 1.4425 0.0006 7 8 4.1535 0.3921 0.0006 8 7 4.2208 2.6097 0.0002 9 6 5.6168 2.6127 -0.1178 10 6 6.2507 1.6534 -0.8936 11 6 7.6277 1.6576 -1.0097 12 6 8.3791 2.6182 -0.3522 13 9 9.7251 2.6172 -0.4688 14 6 7.7544 3.5783 0.4236 15 6 6.3721 3.5806 0.5437 16 8 5.7562 4.5254 1.2996 17 6 6.5487 5.3584 2.0035 18 1 7.6172 5.2014 2.0205 19 6 5.9923 6.4164 2.7055 20 7 6.7657 7.2296 3.3921 21 14 4.1443 6.6883 2.6755 22 1 3.5157 5.9401 3.7937 23 1 3.8547 8.1372 2.8247 24 1 3.5937 6.2038 1.3843 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.8936 3.1912 1.2495 31 1 0.4400 2.1637 1.2493 32 1 1.8933 1.6499 2.1393 33 1 1.8932 1.6500 -2.1392 34 1 0.4399 2.1638 -1.2492 35 1 1.8928 3.1916 -1.2490 36 1 3.7393 3.4479 0.0817 37 1 5.6680 0.9030 -1.4071 38 1 8.1195 0.9102 -1.6146 39 1 8.3422 4.3262 0.9348 40 1 6.3765 7.9701 3.8830 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120127460.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:56 Heat of formation + Delta-G solvation = -113.138774 kcal Electronic energy + Delta-G solvation = -24213.613156 eV Core-core repulsion = 20521.634773 eV Total energy + Delta-G solvation = -3691.978383 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.89705 -41.94971 -40.63884 -38.40541 -37.23874 -35.70278 -34.50139 -31.50898 -31.20131 -29.74322 -28.29856 -27.37309 -25.87942 -24.39278 -23.42385 -22.28162 -20.25148 -20.05345 -19.58149 -18.39861 -17.94317 -17.28186 -16.98583 -16.62589 -16.16798 -16.10136 -15.90009 -15.66699 -15.32934 -15.18375 -15.01180 -14.93243 -14.27169 -14.00670 -13.64706 -13.61652 -13.50577 -13.13657 -12.95561 -12.81195 -12.65814 -12.46127 -12.38527 -12.17320 -12.15143 -11.69272 -11.54830 -11.51328 -11.22820 -10.96423 -10.68836 -9.67626 -8.88458 -8.53931 -6.28637 0.07855 0.35098 1.32264 1.37657 1.50073 1.55097 2.03897 2.24901 2.53823 2.80762 2.95285 3.32321 3.50785 3.72510 3.85187 3.88879 4.09636 4.18600 4.22982 4.46665 4.52525 4.57880 4.69807 4.75083 4.79330 4.87621 4.92370 5.07922 5.10220 5.12658 5.13796 5.15004 5.21369 5.26501 5.41640 5.42901 5.54968 5.58213 5.77679 6.02223 6.41460 6.77346 7.08718 7.39713 8.56967 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.011225 B = 0.006476 C = 0.004280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2493.870253 B = 4322.791528 C = 6541.175159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.096 4.096 3 C -0.074 4.074 4 C -0.149 4.149 5 C -0.142 4.142 6 C 0.516 3.484 7 O -0.560 6.560 8 N -0.654 5.654 9 C 0.071 3.929 10 C -0.050 4.050 11 C -0.193 4.193 12 C 0.120 3.880 13 F -0.145 7.145 14 C -0.257 4.257 15 C 0.139 3.861 16 O -0.219 6.219 17 C -0.403 4.403 18 H 0.077 0.923 19 C 0.014 3.986 20 N -0.918 5.918 21 Si 0.968 3.032 22 H -0.265 1.265 23 H -0.272 1.272 24 H -0.243 1.243 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.101 0.899 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.098 0.902 35 H 0.062 0.938 36 H 0.416 0.584 37 H 0.153 0.847 38 H 0.162 0.838 39 H 0.127 0.873 40 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.230 -10.082 -9.318 19.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.135 4.135 3 C -0.077 4.077 4 C -0.206 4.206 5 C -0.199 4.199 6 C 0.306 3.694 7 O -0.438 6.438 8 N -0.299 5.299 9 C -0.024 4.024 10 C -0.070 4.070 11 C -0.212 4.212 12 C 0.100 3.900 13 F -0.124 7.124 14 C -0.278 4.278 15 C 0.087 3.913 16 O -0.125 6.125 17 C -0.479 4.479 18 H 0.095 0.905 19 C -0.186 4.186 20 N -0.557 5.557 21 Si 0.789 3.211 22 H -0.190 1.190 23 H -0.196 1.196 24 H -0.166 1.166 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.120 0.880 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.116 0.884 35 H 0.081 0.919 36 H 0.253 0.747 37 H 0.171 0.829 38 H 0.179 0.821 39 H 0.145 0.855 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.019 -10.585 -9.157 19.809 hybrid contribution 0.626 1.008 0.658 1.357 sum -13.394 -9.576 -8.499 18.529 Atomic orbital electron populations 1.21895 0.93122 1.02596 1.03088 1.21332 0.97340 0.92601 1.02177 1.20871 0.87602 0.99657 0.99530 1.22020 1.03803 0.99695 0.95091 1.21968 1.03597 0.99809 0.94536 1.21510 0.91531 0.82318 0.74042 1.90650 1.71071 1.32062 1.50005 1.43369 1.04056 1.10508 1.71930 1.17086 0.83780 0.98788 1.02735 1.20721 0.93752 0.96998 0.95574 1.20924 0.93504 1.01244 1.05550 1.17493 0.76630 0.96909 0.98967 1.91435 1.30012 1.96236 1.94708 1.21004 0.94871 1.04035 1.07873 1.18875 0.90462 0.90794 0.91166 1.83464 1.35283 1.40195 1.53580 1.20626 0.91719 1.08548 1.26958 0.90497 1.25347 1.05276 0.93452 0.94516 1.69738 1.38255 1.16601 1.31156 0.85259 0.77299 0.78031 0.80531 1.18991 1.19649 1.16587 0.91980 0.91601 0.90935 0.92010 0.93035 0.92383 0.88032 0.93137 0.91965 0.88369 0.91932 0.74652 0.82925 0.82057 0.85545 0.90376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.21 71.98 0.66 -1.26 16 2 C -0.10 -1.88 4.28 30.60 0.13 -1.75 16 3 C -0.07 -1.54 0.65 -52.93 -0.03 -1.57 16 4 C -0.15 -2.90 8.01 71.98 0.58 -2.32 16 5 C -0.14 -2.24 8.02 71.98 0.58 -1.66 16 6 C 0.52 15.49 6.21 87.66 0.54 16.03 16 7 O -0.56 -20.04 13.74 -3.07 -0.04 -20.08 16 8 N -0.65 -21.28 4.98 -303.04 -1.51 -22.79 16 9 C 0.07 2.71 6.28 38.23 0.24 2.95 16 10 C -0.05 -1.72 8.65 22.37 0.19 -1.53 16 11 C -0.19 -6.40 10.02 22.33 0.22 -6.18 16 12 C 0.12 4.65 7.29 22.37 0.16 4.81 16 13 F -0.15 -5.47 17.26 44.97 0.78 -4.69 16 14 C -0.26 -11.51 9.11 22.42 0.20 -11.30 16 15 C 0.14 6.25 6.66 22.69 0.15 6.40 16 16 O -0.22 -10.82 8.13 -22.67 -0.18 -11.00 16 17 C -0.40 -22.44 9.90 67.91 0.67 -21.77 16 18 H 0.08 4.62 5.53 -2.91 -0.02 4.60 16 19 C 0.01 0.74 5.49 84.83 0.47 1.21 16 20 N -0.92 -52.81 13.96 21.61 0.30 -52.51 16 21 Si 0.97 41.03 28.62 68.60 1.96 43.00 16 22 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 23 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 24 H -0.24 -9.46 7.11 99.48 0.71 -8.75 16 25 H 0.06 0.73 8.14 -2.39 -0.02 0.72 16 26 H 0.07 0.76 6.43 -2.39 -0.02 0.75 16 27 H 0.07 0.74 6.43 -2.39 -0.02 0.72 16 28 H 0.06 1.28 8.10 -2.39 -0.02 1.27 16 29 H 0.05 1.18 8.10 -2.39 -0.02 1.16 16 30 H 0.06 1.19 7.45 -2.39 -0.02 1.18 16 31 H 0.10 1.38 6.43 -2.39 -0.02 1.36 16 32 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.10 1.06 6.43 -2.39 -0.02 1.04 16 35 H 0.06 1.00 7.70 -2.39 -0.02 0.98 16 36 H 0.42 12.52 7.42 -92.70 -0.69 11.83 16 37 H 0.15 4.83 6.48 -2.91 -0.02 4.82 16 38 H 0.16 4.24 8.06 -2.91 -0.02 4.22 16 39 H 0.13 6.20 5.71 -2.91 -0.02 6.18 16 40 H 0.29 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -64.48 330.80 6.47 -58.01 By element: Atomic # 1 Polarization: 27.62 SS G_CDS: 0.39 Total: 28.02 kcal Atomic # 6 Polarization: -22.72 SS G_CDS: 4.77 Total: -17.95 kcal Atomic # 7 Polarization: -74.10 SS G_CDS: -1.21 Total: -75.30 kcal Atomic # 8 Polarization: -30.85 SS G_CDS: -0.23 Total: -31.08 kcal Atomic # 9 Polarization: -5.47 SS G_CDS: 0.78 Total: -4.69 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 1.96 Total: 43.00 kcal Total: -64.48 6.47 -58.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120127460.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.127 kcal (2) G-P(sol) polarization free energy of solvation -64.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds