Wall clock time and date at job start Tue Mar 31 2020 07:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46870 * 2 1 4 4 C 1.53002 * 109.46803 * 240.00254 * 2 1 3 5 5 C 1.53000 * 109.47278 * 120.00048 * 2 1 3 6 6 C 1.50699 * 109.46797 * 59.99944 * 5 2 1 7 7 O 1.21294 * 120.00578 * 0.02562 * 6 5 2 8 8 N 1.34776 * 119.99644 * 179.97438 * 6 5 2 9 9 C 1.40086 * 120.00220 * 183.93266 * 8 6 5 10 10 C 1.38708 * 120.07424 * 334.49377 * 9 8 6 11 11 C 1.38193 * 120.02028 * 179.97438 * 10 9 8 12 12 C 1.38549 * 120.17945 * 0.02785 * 11 10 9 13 13 F 1.35096 * 119.92684 * 179.97438 * 12 11 10 14 14 C 1.38342 * 120.15218 * 359.97438 * 12 11 10 15 15 C 1.38744 * 119.97458 * 359.97438 * 14 12 11 16 16 O 1.35776 * 120.08608 * 180.29573 * 15 14 12 17 17 C 1.34808 * 117.00081 * 354.38526 * 16 15 14 18 18 H 1.08003 * 120.00262 * 354.62093 * 17 16 15 19 19 C 1.38637 * 120.00182 * 174.63017 * 17 16 15 20 20 N 1.31570 * 119.99919 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 119.99999 * 359.97438 * 19 17 16 22 22 H 1.48493 * 109.47210 * 90.00269 * 21 19 17 23 23 H 1.48496 * 109.46806 * 210.00362 * 21 19 17 24 24 H 1.48500 * 109.46887 * 330.00057 * 21 19 17 25 25 H 1.09001 * 109.46768 * 299.99442 * 1 2 3 26 26 H 1.08995 * 109.47626 * 59.99915 * 1 2 3 27 27 H 1.09005 * 109.47275 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47374 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.47224 * 300.00377 * 3 2 1 30 30 H 1.08999 * 109.47350 * 60.00323 * 3 2 1 31 31 H 1.08999 * 109.46984 * 300.00112 * 4 2 1 32 32 H 1.09005 * 109.47130 * 59.99722 * 4 2 1 33 33 H 1.08999 * 109.46858 * 179.97438 * 4 2 1 34 34 H 1.08999 * 109.47154 * 299.99807 * 5 2 1 35 35 H 1.08994 * 109.46484 * 179.97438 * 5 2 1 36 36 H 0.97006 * 119.99948 * 3.93393 * 8 6 5 37 37 H 1.08003 * 119.99189 * 359.97438 * 10 9 8 38 38 H 1.08004 * 119.90966 * 180.02562 * 11 10 9 39 39 H 1.08003 * 120.01243 * 180.02562 * 14 12 11 40 40 H 0.97003 * 119.99919 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7213 1.2492 6 6 1.5377 -2.1420 1.2492 7 8 0.8407 -2.5389 0.3393 8 7 1.8638 -2.9721 2.2597 9 6 1.4663 -4.3147 2.2194 10 6 0.3494 -4.6873 1.4860 11 6 -0.0414 -6.0122 1.4466 12 6 0.6793 -6.9719 2.1387 13 9 0.2924 -8.2656 2.0970 14 6 1.7944 -6.6084 2.8724 15 6 2.1931 -5.2802 2.9156 16 8 3.2906 -4.9219 3.6301 17 6 3.8809 -5.8830 4.3685 18 1 3.4292 -6.8612 4.4423 19 6 5.0677 -5.6157 5.0333 20 7 5.6435 -6.5536 5.7543 21 14 5.8494 -3.9239 4.9054 22 1 5.3331 -3.0565 5.9945 23 1 7.3238 -4.0493 5.0293 24 1 5.5126 -3.3211 3.5907 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 -1.7489 -1.2493 32 1 1.6765 -0.2073 -2.1393 33 1 3.1300 -0.7208 -1.2496 34 1 1.6768 -0.2074 2.1392 35 1 3.1300 -0.7216 1.2489 36 1 2.3737 -2.6397 3.0150 37 1 -0.2150 -3.9416 0.9457 38 1 -0.9112 -6.3003 0.8747 39 1 2.3549 -7.3585 3.4108 40 1 6.4741 -6.3666 6.2192 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120269499.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:59 Heat of formation + Delta-G solvation = -89.782049 kcal Electronic energy + Delta-G solvation = -23994.049793 eV Core-core repulsion = 20303.084234 eV Total energy + Delta-G solvation = -3690.965559 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.29793 -40.57288 -39.10923 -37.07505 -36.07373 -34.24915 -32.53809 -29.87624 -29.38101 -27.44633 -27.22912 -27.17894 -25.44563 -22.69328 -21.69655 -20.40899 -19.06193 -18.29196 -17.96176 -16.96454 -16.76100 -15.61265 -15.42404 -15.07671 -15.01972 -14.59849 -14.43354 -14.29213 -14.14409 -13.87893 -13.57492 -13.30896 -12.86172 -12.53155 -12.47234 -12.22017 -12.17323 -11.92507 -11.79561 -11.64245 -11.24037 -11.11372 -10.91499 -10.82119 -10.75040 -10.69071 -10.49827 -9.81109 -9.75738 -9.12406 -9.02918 -7.99940 -7.24405 -6.57357 -4.24890 1.68460 1.99391 2.79731 3.08083 3.10960 3.21283 3.33861 4.06079 4.23452 4.47467 4.58117 4.75788 4.76774 4.91781 4.96677 5.14737 5.39075 5.42358 5.48306 5.52486 5.56803 5.67650 5.71575 5.82144 5.86240 5.88500 6.01654 6.07411 6.08836 6.18838 6.36636 6.47149 6.57772 6.70305 6.79700 6.86509 6.97566 7.43199 7.60027 7.74580 7.84306 8.38119 8.75495 9.30037 10.49814 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.011940 B = 0.005657 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.456076 B = 4948.472471 C = 7057.626414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.050 4.050 3 C -0.142 4.142 4 C -0.155 4.155 5 C -0.134 4.134 6 C 0.510 3.490 7 O -0.524 6.524 8 N -0.652 5.652 9 C 0.061 3.939 10 C -0.065 4.065 11 C -0.221 4.221 12 C 0.126 3.874 13 F -0.149 7.149 14 C -0.245 4.245 15 C 0.161 3.839 16 O -0.210 6.210 17 C -0.391 4.391 18 H 0.109 0.891 19 C 0.066 3.934 20 N -0.871 5.871 21 Si 0.904 3.096 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.259 1.259 25 H 0.045 0.955 26 H 0.049 0.951 27 H 0.085 0.915 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.086 0.914 32 H 0.048 0.952 33 H 0.045 0.955 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.412 0.588 37 H 0.158 0.842 38 H 0.124 0.876 39 H 0.149 0.851 40 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.826 12.630 -8.031 16.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.050 4.050 3 C -0.200 4.200 4 C -0.212 4.212 5 C -0.174 4.174 6 C 0.299 3.701 7 O -0.402 6.402 8 N -0.294 5.294 9 C -0.033 4.033 10 C -0.085 4.085 11 C -0.241 4.241 12 C 0.106 3.894 13 F -0.128 7.128 14 C -0.266 4.266 15 C 0.107 3.893 16 O -0.115 6.115 17 C -0.467 4.467 18 H 0.126 0.874 19 C -0.138 4.138 20 N -0.508 5.508 21 Si 0.729 3.271 22 H -0.197 1.197 23 H -0.206 1.206 24 H -0.183 1.183 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.104 0.896 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.105 0.895 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.248 0.752 37 H 0.175 0.825 38 H 0.142 0.858 39 H 0.166 0.834 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.965 12.499 -8.492 16.639 hybrid contribution 0.849 0.318 0.616 1.096 sum -6.116 12.818 -7.875 16.239 Atomic orbital electron populations 1.22113 0.94086 1.04205 1.00634 1.20250 0.96375 0.94342 0.94047 1.21901 1.00917 0.95396 1.01739 1.22123 1.00069 1.03035 0.95936 1.21804 1.02696 0.92281 1.00581 1.20714 0.80459 0.87807 0.81089 1.90462 1.37393 1.76620 1.35727 1.43270 1.55044 1.08125 1.23011 1.16997 0.97466 0.82356 1.06521 1.21061 0.93812 0.96059 0.97607 1.20611 1.03699 0.92700 1.07083 1.17503 0.95193 0.77841 0.98833 1.91425 1.90688 1.35512 1.95178 1.20973 1.00535 0.97103 1.07956 1.18486 0.87907 0.90766 0.92160 1.83510 1.35820 1.38881 1.53241 1.20756 1.06790 0.94144 1.24972 0.87417 1.24474 0.95013 0.99203 0.95132 1.69644 1.18725 1.32979 1.29450 0.86214 0.78389 0.82790 0.79715 1.19658 1.20584 1.18328 0.93612 0.93219 0.89605 0.92692 0.92477 0.92730 0.89512 0.93242 0.93562 0.88828 0.88718 0.75240 0.82502 0.85784 0.83379 0.90785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 8.18 37.16 0.30 -1.34 16 2 C -0.05 -0.52 0.77 -154.51 -0.12 -0.64 16 3 C -0.14 -1.21 8.47 37.16 0.31 -0.89 16 4 C -0.15 -1.78 8.18 37.16 0.30 -1.47 16 5 C -0.13 -1.45 4.77 -27.88 -0.13 -1.58 16 6 C 0.51 7.34 7.13 -10.99 -0.08 7.26 16 7 O -0.52 -8.36 8.27 5.55 0.05 -8.31 16 8 N -0.65 -10.51 5.28 -9.72 -0.05 -10.56 16 9 C 0.06 1.16 6.47 -83.45 -0.54 0.62 16 10 C -0.07 -1.16 8.79 -39.42 -0.35 -1.51 16 11 C -0.22 -3.91 10.02 -39.48 -0.40 -4.31 16 12 C 0.13 2.47 7.29 -39.43 -0.29 2.18 16 13 F -0.15 -2.86 17.26 2.25 0.04 -2.82 16 14 C -0.24 -5.27 9.11 -39.36 -0.36 -5.63 16 15 C 0.16 3.50 6.66 -38.94 -0.26 3.24 16 16 O -0.21 -4.99 8.01 0.03 0.00 -4.99 16 17 C -0.39 -10.33 9.90 30.88 0.31 -10.02 16 18 H 0.11 2.97 5.52 -52.48 -0.29 2.68 16 19 C 0.07 1.75 5.49 -17.52 -0.10 1.65 16 20 N -0.87 -24.01 13.96 55.48 0.77 -23.23 16 21 Si 0.90 19.83 28.62 -169.99 -4.86 14.96 16 22 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 23 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 24 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 25 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.09 1.10 5.51 -51.93 -0.29 0.82 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.09 1.21 5.51 -51.93 -0.29 0.92 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.41 6.17 8.37 -40.82 -0.34 5.83 16 37 H 0.16 2.66 5.52 -52.48 -0.29 2.37 16 38 H 0.12 1.89 8.06 -52.48 -0.42 1.47 16 39 H 0.15 3.35 5.71 -52.48 -0.30 3.05 16 40 H 0.28 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 329.75 15.07 4.97 4.97 Total: -1.00 -27.73 329.75 -5.63 -33.36 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -5.16 Total: 9.06 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: -1.39 Total: -12.44 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: 0.72 Total: -33.80 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.05 Total: -13.30 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.04 Total: -2.82 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -4.86 Total: 14.96 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.73 -5.63 -33.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120269499.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.425 kcal (2) G-P(sol) polarization free energy of solvation -27.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds