Wall clock time and date at job start Tue Mar 31 2020 07:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46870 * 2 1 4 4 C 1.53002 * 109.46803 * 240.00254 * 2 1 3 5 5 C 1.53000 * 109.47278 * 120.00048 * 2 1 3 6 6 C 1.50699 * 109.46797 * 59.99944 * 5 2 1 7 7 O 1.21294 * 120.00578 * 0.02562 * 6 5 2 8 8 N 1.34776 * 119.99644 * 179.97438 * 6 5 2 9 9 C 1.40086 * 120.00220 * 183.93266 * 8 6 5 10 10 C 1.38708 * 120.07424 * 334.49377 * 9 8 6 11 11 C 1.38193 * 120.02028 * 179.97438 * 10 9 8 12 12 C 1.38549 * 120.17945 * 0.02785 * 11 10 9 13 13 F 1.35096 * 119.92684 * 179.97438 * 12 11 10 14 14 C 1.38342 * 120.15218 * 359.97438 * 12 11 10 15 15 C 1.38744 * 119.97458 * 359.97438 * 14 12 11 16 16 O 1.35776 * 120.08608 * 180.29573 * 15 14 12 17 17 C 1.34808 * 117.00081 * 354.38526 * 16 15 14 18 18 H 1.08003 * 120.00262 * 354.62093 * 17 16 15 19 19 C 1.38637 * 120.00182 * 174.63017 * 17 16 15 20 20 N 1.31570 * 119.99919 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 119.99999 * 359.97438 * 19 17 16 22 22 H 1.48493 * 109.47210 * 90.00269 * 21 19 17 23 23 H 1.48496 * 109.46806 * 210.00362 * 21 19 17 24 24 H 1.48500 * 109.46887 * 330.00057 * 21 19 17 25 25 H 1.09001 * 109.46768 * 299.99442 * 1 2 3 26 26 H 1.08995 * 109.47626 * 59.99915 * 1 2 3 27 27 H 1.09005 * 109.47275 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47374 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.47224 * 300.00377 * 3 2 1 30 30 H 1.08999 * 109.47350 * 60.00323 * 3 2 1 31 31 H 1.08999 * 109.46984 * 300.00112 * 4 2 1 32 32 H 1.09005 * 109.47130 * 59.99722 * 4 2 1 33 33 H 1.08999 * 109.46858 * 179.97438 * 4 2 1 34 34 H 1.08999 * 109.47154 * 299.99807 * 5 2 1 35 35 H 1.08994 * 109.46484 * 179.97438 * 5 2 1 36 36 H 0.97006 * 119.99948 * 3.93393 * 8 6 5 37 37 H 1.08003 * 119.99189 * 359.97438 * 10 9 8 38 38 H 1.08004 * 119.90966 * 180.02562 * 11 10 9 39 39 H 1.08003 * 120.01243 * 180.02562 * 14 12 11 40 40 H 0.97003 * 119.99919 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7213 1.2492 6 6 1.5377 -2.1420 1.2492 7 8 0.8407 -2.5389 0.3393 8 7 1.8638 -2.9721 2.2597 9 6 1.4663 -4.3147 2.2194 10 6 0.3494 -4.6873 1.4860 11 6 -0.0414 -6.0122 1.4466 12 6 0.6793 -6.9719 2.1387 13 9 0.2924 -8.2656 2.0970 14 6 1.7944 -6.6084 2.8724 15 6 2.1931 -5.2802 2.9156 16 8 3.2906 -4.9219 3.6301 17 6 3.8809 -5.8830 4.3685 18 1 3.4292 -6.8612 4.4423 19 6 5.0677 -5.6157 5.0333 20 7 5.6435 -6.5536 5.7543 21 14 5.8494 -3.9239 4.9054 22 1 5.3331 -3.0565 5.9945 23 1 7.3238 -4.0493 5.0293 24 1 5.5126 -3.3211 3.5907 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 -1.7489 -1.2493 32 1 1.6765 -0.2073 -2.1393 33 1 3.1300 -0.7208 -1.2496 34 1 1.6768 -0.2074 2.1392 35 1 3.1300 -0.7216 1.2489 36 1 2.3737 -2.6397 3.0150 37 1 -0.2150 -3.9416 0.9457 38 1 -0.9112 -6.3003 0.8747 39 1 2.3549 -7.3585 3.4108 40 1 6.4741 -6.3666 6.2192 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120269499.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:58 Heat of formation + Delta-G solvation = -105.071125 kcal Electronic energy + Delta-G solvation = -23994.712777 eV Core-core repulsion = 20303.084234 eV Total energy + Delta-G solvation = -3691.628543 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.86652 -41.87941 -40.59753 -38.44493 -37.28704 -35.57009 -34.48032 -31.35091 -30.81029 -28.64560 -28.03675 -27.96695 -27.29028 -24.20606 -23.27420 -21.68875 -20.24597 -19.94621 -19.48269 -18.23734 -18.17687 -17.18057 -16.90039 -16.60240 -16.32757 -15.88494 -15.67244 -15.59971 -15.36830 -15.21780 -15.12641 -14.90823 -14.26581 -13.95611 -13.81340 -13.53603 -13.30863 -12.93479 -12.89229 -12.65821 -12.57955 -12.42362 -12.23297 -12.16031 -11.89000 -11.67144 -11.58648 -11.49041 -11.16899 -10.93748 -10.31682 -9.62680 -8.79340 -8.52486 -6.27066 0.13743 0.38990 1.33934 1.38902 1.52357 1.61221 2.10311 2.26330 2.62525 2.77940 2.99459 3.37084 3.65140 3.82841 3.93243 3.98373 4.13474 4.27574 4.30650 4.54677 4.65553 4.67194 4.69052 4.87927 4.90734 4.92889 5.04691 5.10586 5.15072 5.16903 5.23061 5.27291 5.33180 5.41172 5.46435 5.57151 5.60081 5.72783 5.82110 6.07734 6.49934 6.79064 7.17615 7.41925 8.58539 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.011940 B = 0.005657 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.456076 B = 4948.472471 C = 7057.626414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.049 4.049 3 C -0.138 4.138 4 C -0.154 4.154 5 C -0.130 4.130 6 C 0.510 3.490 7 O -0.537 6.537 8 N -0.656 5.656 9 C 0.077 3.923 10 C -0.066 4.066 11 C -0.193 4.193 12 C 0.112 3.888 13 F -0.148 7.148 14 C -0.257 4.257 15 C 0.134 3.866 16 O -0.220 6.220 17 C -0.402 4.402 18 H 0.077 0.923 19 C 0.013 3.987 20 N -0.920 5.920 21 Si 0.971 3.029 22 H -0.257 1.257 23 H -0.275 1.275 24 H -0.250 1.250 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.048 0.952 34 H 0.119 0.881 35 H 0.107 0.893 36 H 0.418 0.582 37 H 0.174 0.826 38 H 0.159 0.841 39 H 0.124 0.876 40 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.717 15.896 -9.351 19.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.050 4.050 3 C -0.195 4.195 4 C -0.211 4.211 5 C -0.169 4.169 6 C 0.300 3.700 7 O -0.416 6.416 8 N -0.300 5.300 9 C -0.019 4.019 10 C -0.086 4.086 11 C -0.213 4.213 12 C 0.093 3.907 13 F -0.127 7.127 14 C -0.278 4.278 15 C 0.082 3.918 16 O -0.127 6.127 17 C -0.478 4.478 18 H 0.094 0.906 19 C -0.187 4.187 20 N -0.559 5.559 21 Si 0.792 3.208 22 H -0.181 1.181 23 H -0.201 1.201 24 H -0.173 1.173 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.138 0.862 35 H 0.126 0.874 36 H 0.255 0.745 37 H 0.191 0.809 38 H 0.176 0.824 39 H 0.142 0.858 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.896 15.781 -9.841 20.205 hybrid contribution 0.869 -0.740 0.832 1.413 sum -7.027 15.041 -9.009 18.888 Atomic orbital electron populations 1.22067 0.94365 1.02884 1.01525 1.20282 0.96133 0.95457 0.93115 1.21854 1.01262 0.93765 1.02616 1.22087 1.00202 1.01647 0.97143 1.21913 1.03439 0.89567 1.01987 1.21451 0.79652 0.88829 0.80031 1.90463 1.37938 1.77148 1.36042 1.43446 1.55490 1.07016 1.24036 1.17179 0.96641 0.83473 1.04608 1.21346 0.93451 0.96501 0.97287 1.21016 1.03384 0.92011 1.04877 1.17556 0.95212 0.78451 0.99529 1.91425 1.90573 1.35460 1.95213 1.20973 1.01383 0.97011 1.08442 1.18825 0.88049 0.91545 0.93373 1.83455 1.37016 1.37760 1.54427 1.20622 1.07332 0.93716 1.26151 0.90564 1.25355 0.95341 1.03391 0.94575 1.69746 1.19675 1.35335 1.31187 0.85211 0.77397 0.77804 0.80390 1.18133 1.20057 1.17329 0.92492 0.92636 0.91909 0.92148 0.91999 0.91540 0.92192 0.92493 0.93300 0.86249 0.87437 0.74531 0.80863 0.82384 0.85794 0.90419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 8.18 71.98 0.59 -2.22 16 2 C -0.05 -0.87 0.77 -52.18 -0.04 -0.91 16 3 C -0.14 -1.80 8.47 71.98 0.61 -1.19 16 4 C -0.15 -3.19 8.18 71.98 0.59 -2.60 16 5 C -0.13 -2.35 4.77 29.85 0.14 -2.21 16 6 C 0.51 13.37 7.13 87.66 0.63 14.00 16 7 O -0.54 -16.00 8.27 -3.07 -0.03 -16.02 16 8 N -0.66 -19.87 5.28 -303.04 -1.60 -21.47 16 9 C 0.08 2.82 6.47 38.23 0.25 3.06 16 10 C -0.07 -2.20 8.79 22.37 0.20 -2.00 16 11 C -0.19 -6.39 10.02 22.33 0.22 -6.17 16 12 C 0.11 4.37 7.29 22.37 0.16 4.53 16 13 F -0.15 -5.63 17.26 44.97 0.78 -4.85 16 14 C -0.26 -11.48 9.11 22.42 0.20 -11.27 16 15 C 0.13 5.91 6.66 22.69 0.15 6.06 16 16 O -0.22 -10.70 8.01 -22.80 -0.18 -10.88 16 17 C -0.40 -22.24 9.90 67.92 0.67 -21.57 16 18 H 0.08 4.56 5.52 -2.91 -0.02 4.54 16 19 C 0.01 0.69 5.49 84.83 0.47 1.15 16 20 N -0.92 -52.77 13.96 21.61 0.30 -52.47 16 21 Si 0.97 40.86 28.62 68.60 1.96 42.82 16 22 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 23 H -0.28 -11.22 7.11 99.48 0.71 -10.52 16 24 H -0.25 -9.98 7.11 99.48 0.71 -9.27 16 25 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.06 1.48 5.51 -2.38 -0.01 1.46 16 28 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 30 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.06 1.58 5.51 -2.39 -0.01 1.57 16 32 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 33 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.42 11.67 8.37 -92.70 -0.78 10.90 16 37 H 0.17 5.37 5.52 -2.91 -0.02 5.35 16 38 H 0.16 4.19 8.06 -2.91 -0.02 4.17 16 39 H 0.12 6.09 5.71 -2.91 -0.02 6.08 16 40 H 0.29 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -62.13 329.75 6.37 -55.76 By element: Atomic # 1 Polarization: 28.15 SS G_CDS: 0.30 Total: 28.45 kcal Atomic # 6 Polarization: -26.17 SS G_CDS: 4.84 Total: -21.33 kcal Atomic # 7 Polarization: -72.64 SS G_CDS: -1.30 Total: -73.94 kcal Atomic # 8 Polarization: -26.69 SS G_CDS: -0.21 Total: -26.90 kcal Atomic # 9 Polarization: -5.63 SS G_CDS: 0.78 Total: -4.85 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 1.96 Total: 42.82 kcal Total: -62.13 6.37 -55.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120269499.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.313 kcal (2) G-P(sol) polarization free energy of solvation -62.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds