Wall clock time and date at job start Tue Mar 31 2020 06:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38429 * 122.53853 * 2 1 4 4 C 1.33381 * 114.91617 * 180.27362 * 3 2 1 5 5 S 1.75881 * 109.59874 * 359.76907 * 4 3 2 6 6 C 1.33383 * 122.53758 * 179.82597 * 2 1 3 7 7 C 1.50693 * 125.20608 * 0.02562 * 6 2 1 8 8 C 1.53001 * 109.47768 * 89.71326 * 7 6 2 9 9 C 1.52992 * 109.47364 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.47132 * 180.02562 * 9 8 7 11 11 O 1.21281 * 119.99822 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00362 * 180.02562 * 10 9 8 13 13 C 1.46503 * 119.99812 * 359.97438 * 12 10 9 14 14 C 1.46497 * 120.00371 * 179.97438 * 12 10 9 15 15 H 1.09003 * 109.46733 * 0.02562 * 14 12 10 16 16 C 1.53000 * 109.47145 * 119.99612 * 14 12 10 17 17 C 1.50694 * 109.47115 * 239.99685 * 14 12 10 18 18 H 1.08000 * 120.00563 * 359.97438 * 17 14 12 19 19 C 1.37885 * 119.99902 * 180.02562 * 17 14 12 20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 14 22 22 H 1.48506 * 109.46985 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47276 * 299.99832 * 21 19 17 24 24 H 1.48498 * 109.47150 * 60.00043 * 21 19 17 25 25 H 1.09004 * 109.46810 * 270.17170 * 1 2 3 26 26 H 1.08995 * 109.46983 * 30.16826 * 1 2 3 27 27 H 1.08997 * 109.47150 * 150.16867 * 1 2 3 28 28 H 1.08001 * 122.53924 * 0.03959 * 3 2 1 29 29 H 1.08001 * 125.20194 * 179.74653 * 4 3 2 30 30 H 1.09000 * 109.46922 * 329.71056 * 7 6 2 31 31 H 1.09000 * 109.47119 * 209.71781 * 7 6 2 32 32 H 1.08998 * 109.46601 * 59.99854 * 8 7 6 33 33 H 1.08996 * 109.46699 * 300.00503 * 8 7 6 34 34 H 1.09000 * 109.47369 * 59.99704 * 9 8 7 35 35 H 1.09000 * 109.47078 * 299.99394 * 9 8 7 36 36 H 1.08994 * 109.47665 * 270.01072 * 13 12 10 37 37 H 1.09008 * 109.46786 * 30.00680 * 13 12 10 38 38 H 1.08997 * 109.47360 * 150.00121 * 13 12 10 39 39 H 1.09000 * 109.47156 * 59.99824 * 16 14 12 40 40 H 1.08997 * 109.47359 * 180.02562 * 16 14 12 41 41 H 1.09007 * 109.47356 * 300.00099 * 16 14 12 42 42 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2516 1.1670 0.0000 4 6 3.5737 0.9901 -0.0058 5 16 3.9386 -0.7304 -0.0050 6 6 2.2245 -1.1245 0.0034 7 6 1.6537 -2.5191 0.0071 8 6 1.4544 -2.9926 -1.4341 9 6 0.8743 -4.4083 -1.4302 10 6 0.6786 -4.8748 -2.8498 11 8 0.9735 -4.1464 -3.7736 12 7 0.1748 -6.1010 -3.0928 13 6 -0.1820 -6.9807 -1.9769 14 6 -0.0161 -6.5543 -4.4727 15 1 0.3034 -5.7708 -5.1599 16 6 0.8163 -7.8150 -4.7151 17 6 -1.4730 -6.8623 -4.7033 18 1 -2.1857 -6.7337 -3.9021 19 6 -1.8963 -7.3094 -5.9371 20 7 -1.0285 -7.4664 -6.9128 21 14 -3.7023 -7.6918 -6.2227 22 1 -3.8957 -8.1512 -7.6216 23 1 -4.1363 -8.7593 -5.2862 24 1 -4.5105 -6.4684 -5.9878 25 1 -0.3633 0.0031 1.0277 26 1 -0.3633 0.8884 -0.5164 27 1 -0.3633 -0.8915 -0.5112 28 1 1.7965 2.1464 0.0006 29 1 4.3078 1.7822 -0.0106 30 1 0.6947 -2.5178 0.5251 31 1 2.3419 -3.1920 0.5187 32 1 2.4135 -2.9939 -1.9520 33 1 0.7662 -2.3197 -1.9456 34 1 -0.0848 -4.4066 -0.9124 35 1 1.5623 -5.0814 -0.9187 36 1 0.6802 -7.5886 -1.7033 37 1 -0.4871 -6.3773 -1.1218 38 1 -1.0049 -7.6303 -2.2751 39 1 0.4975 -8.5986 -4.0279 40 1 0.6747 -8.1520 -5.7420 41 1 1.8703 -7.5922 -4.5483 42 1 -1.3262 -7.7813 -7.7806 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120521588.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:03 Heat of formation + Delta-G solvation = -23.995269 kcal Electronic energy + Delta-G solvation = -21186.043981 eV Core-core repulsion = 18064.144327 eV Total energy + Delta-G solvation = -3121.899654 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.18369 -38.56654 -35.48579 -34.52123 -32.83106 -31.10586 -29.73729 -28.62610 -26.11209 -25.61199 -25.18129 -23.05088 -21.93248 -20.54390 -18.51831 -18.18215 -17.26910 -16.50828 -16.07958 -15.63486 -15.24514 -15.12727 -14.28990 -14.17370 -14.09969 -13.24775 -13.17162 -12.85617 -12.60435 -12.45228 -12.32317 -12.08905 -12.00185 -11.74714 -11.62837 -11.52408 -11.44102 -11.09532 -11.01297 -10.84681 -10.80202 -10.65058 -10.51191 -10.24206 -10.15015 -9.17267 -8.87875 -8.64085 -8.40868 -8.40059 -7.54569 -6.05897 -4.14043 0.91153 1.56046 1.92273 2.59303 3.28051 3.33353 3.34431 3.46412 4.00349 4.40559 4.66504 4.81495 4.97375 5.06013 5.22159 5.24987 5.27689 5.35019 5.46750 5.53714 5.55797 5.66826 5.70319 5.72064 5.85667 5.92977 5.96121 6.05612 6.25279 6.34303 6.38958 6.44311 6.52198 6.77749 6.86052 7.09469 7.46463 7.56709 7.73861 8.04142 8.22570 8.58197 8.85287 9.11847 9.52486 10.99386 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.026270 B = 0.002922 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.618355 B = 9579.309507 C = 9912.297133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.113 4.113 3 C -0.127 4.127 4 C -0.220 4.220 5 S 0.089 5.911 6 C -0.165 4.165 7 C -0.050 4.050 8 C -0.097 4.097 9 C -0.139 4.139 10 C 0.501 3.499 11 O -0.554 6.554 12 N -0.595 5.595 13 C 0.084 3.916 14 C 0.257 3.743 15 H 0.062 0.938 16 C -0.146 4.146 17 C -0.527 4.527 18 H 0.058 0.942 19 C 0.064 3.936 20 N -0.888 5.888 21 Si 0.898 3.102 22 H -0.286 1.286 23 H -0.277 1.277 24 H -0.277 1.277 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.137 0.863 29 H 0.161 0.839 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.041 0.959 37 H 0.053 0.947 38 H 0.079 0.921 39 H 0.029 0.971 40 H 0.092 0.908 41 H 0.010 0.990 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.054 11.049 17.294 21.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.124 4.124 3 C -0.158 4.158 4 C -0.355 4.355 5 S 0.355 5.645 6 C -0.283 4.283 7 C -0.089 4.089 8 C -0.135 4.135 9 C -0.179 4.179 10 C 0.288 3.712 11 O -0.433 6.433 12 N -0.327 5.327 13 C -0.060 4.060 14 C 0.157 3.843 15 H 0.080 0.920 16 C -0.204 4.204 17 C -0.565 4.565 18 H 0.077 0.923 19 C -0.138 4.138 20 N -0.526 5.526 21 Si 0.726 3.274 22 H -0.212 1.212 23 H -0.202 1.202 24 H -0.202 1.202 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.155 0.845 29 H 0.179 0.821 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.098 0.902 39 H 0.048 0.952 40 H 0.111 0.889 41 H 0.029 0.971 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.591 10.509 16.582 21.048 hybrid contribution -2.183 0.564 -0.142 2.259 sum 5.408 11.073 16.440 20.546 Atomic orbital electron populations 1.20535 0.89770 1.03136 1.02020 1.18854 0.97508 0.91583 1.04488 1.20045 0.92882 0.99229 1.03637 1.25501 0.99711 0.98976 1.11356 1.84281 1.06350 1.00553 1.73360 1.24330 0.95383 0.99220 1.09320 1.20220 1.00852 0.89556 0.98289 1.21320 1.02606 0.95137 0.94475 1.21692 1.02538 0.97712 0.95968 1.20435 0.78040 0.82018 0.90723 1.90648 1.51971 1.54392 1.46313 1.48254 1.60861 1.14318 1.09239 1.21586 1.00586 0.94802 0.89012 1.18906 0.95099 0.93615 0.76677 0.91987 1.22079 0.95480 0.98810 1.04063 1.21294 0.92662 1.45170 0.97395 0.92333 1.24901 0.97823 0.95277 0.95798 1.69875 1.33760 1.46040 1.02928 0.86557 0.84931 0.78676 0.77227 1.21166 1.20247 1.20238 0.91460 0.91584 0.91051 0.84536 0.82141 0.89896 0.90833 0.91097 0.90826 0.89439 0.89658 0.94011 0.92790 0.90224 0.95218 0.88906 0.97089 0.92639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.89 9.60 36.01 0.35 -0.55 16 2 C -0.11 -1.24 5.80 -106.24 -0.62 -1.86 16 3 C -0.13 -1.29 9.98 -41.21 -0.41 -1.70 16 4 C -0.22 -2.16 11.23 29.04 0.33 -1.84 16 5 S 0.09 0.97 23.33 -107.50 -2.51 -1.54 16 6 C -0.17 -1.89 5.76 -36.01 -0.21 -2.10 16 7 C -0.05 -0.53 5.07 -27.89 -0.14 -0.67 16 8 C -0.10 -1.32 4.49 -26.73 -0.12 -1.44 16 9 C -0.14 -1.96 4.25 -27.89 -0.12 -2.08 16 10 C 0.50 10.31 7.67 -10.99 -0.08 10.22 16 11 O -0.55 -13.80 15.31 5.56 0.09 -13.71 16 12 N -0.60 -12.73 2.75 -175.26 -0.48 -13.22 16 13 C 0.08 1.39 9.24 59.85 0.55 1.95 16 14 C 0.26 6.66 2.64 -69.09 -0.18 6.48 16 15 H 0.06 1.87 6.90 -51.93 -0.36 1.51 16 16 C -0.15 -3.54 8.97 37.16 0.33 -3.21 16 17 C -0.53 -14.32 7.99 -34.44 -0.28 -14.59 16 18 H 0.06 1.55 7.33 -52.49 -0.38 1.17 16 19 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 20 N -0.89 -25.37 11.32 55.43 0.63 -24.74 16 21 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 22 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 27 H 0.07 0.71 6.95 -51.93 -0.36 0.34 16 28 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 29 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 30 H 0.08 0.77 7.33 -51.93 -0.38 0.39 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 33 H 0.07 1.12 7.79 -51.93 -0.40 0.72 16 34 H 0.09 1.07 7.40 -51.93 -0.38 0.68 16 35 H 0.09 1.03 8.11 -51.93 -0.42 0.60 16 36 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.05 0.71 6.44 -51.92 -0.33 0.37 16 38 H 0.08 1.41 7.02 -51.93 -0.36 1.05 16 39 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 40 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 41 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 42 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 353.78 15.07 5.33 5.33 Total: -1.00 -31.82 353.78 -9.28 -41.10 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -6.62 Total: 0.44 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: -0.69 Total: -9.73 kcal Atomic # 7 Polarization: -38.10 SS G_CDS: 0.14 Total: -37.95 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: 0.09 Total: -13.71 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 0.97 SS G_CDS: -2.51 Total: -1.54 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.82 -9.28 -41.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120521588.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.106 kcal (2) G-P(sol) polarization free energy of solvation -31.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds