Wall clock time and date at job start Tue Mar 31 2020 06:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38429 * 122.53853 * 2 1 4 4 C 1.33381 * 114.91617 * 180.27362 * 3 2 1 5 5 S 1.75881 * 109.59874 * 359.76907 * 4 3 2 6 6 C 1.33383 * 122.53758 * 179.82597 * 2 1 3 7 7 C 1.50693 * 125.20608 * 0.02562 * 6 2 1 8 8 C 1.53001 * 109.47768 * 89.71326 * 7 6 2 9 9 C 1.52992 * 109.47364 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.47132 * 180.02562 * 9 8 7 11 11 O 1.21281 * 119.99822 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00362 * 180.02562 * 10 9 8 13 13 C 1.46503 * 119.99812 * 359.97438 * 12 10 9 14 14 C 1.46497 * 120.00371 * 179.97438 * 12 10 9 15 15 H 1.09003 * 109.46733 * 0.02562 * 14 12 10 16 16 C 1.53000 * 109.47145 * 119.99612 * 14 12 10 17 17 C 1.50694 * 109.47115 * 239.99685 * 14 12 10 18 18 H 1.08000 * 120.00563 * 359.97438 * 17 14 12 19 19 C 1.37885 * 119.99902 * 180.02562 * 17 14 12 20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 14 22 22 H 1.48506 * 109.46985 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47276 * 299.99832 * 21 19 17 24 24 H 1.48498 * 109.47150 * 60.00043 * 21 19 17 25 25 H 1.09004 * 109.46810 * 270.17170 * 1 2 3 26 26 H 1.08995 * 109.46983 * 30.16826 * 1 2 3 27 27 H 1.08997 * 109.47150 * 150.16867 * 1 2 3 28 28 H 1.08001 * 122.53924 * 0.03959 * 3 2 1 29 29 H 1.08001 * 125.20194 * 179.74653 * 4 3 2 30 30 H 1.09000 * 109.46922 * 329.71056 * 7 6 2 31 31 H 1.09000 * 109.47119 * 209.71781 * 7 6 2 32 32 H 1.08998 * 109.46601 * 59.99854 * 8 7 6 33 33 H 1.08996 * 109.46699 * 300.00503 * 8 7 6 34 34 H 1.09000 * 109.47369 * 59.99704 * 9 8 7 35 35 H 1.09000 * 109.47078 * 299.99394 * 9 8 7 36 36 H 1.08994 * 109.47665 * 270.01072 * 13 12 10 37 37 H 1.09008 * 109.46786 * 30.00680 * 13 12 10 38 38 H 1.08997 * 109.47360 * 150.00121 * 13 12 10 39 39 H 1.09000 * 109.47156 * 59.99824 * 16 14 12 40 40 H 1.08997 * 109.47359 * 180.02562 * 16 14 12 41 41 H 1.09007 * 109.47356 * 300.00099 * 16 14 12 42 42 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2516 1.1670 0.0000 4 6 3.5737 0.9901 -0.0058 5 16 3.9386 -0.7304 -0.0050 6 6 2.2245 -1.1245 0.0034 7 6 1.6537 -2.5191 0.0071 8 6 1.4544 -2.9926 -1.4341 9 6 0.8743 -4.4083 -1.4302 10 6 0.6786 -4.8748 -2.8498 11 8 0.9735 -4.1464 -3.7736 12 7 0.1748 -6.1010 -3.0928 13 6 -0.1820 -6.9807 -1.9769 14 6 -0.0161 -6.5543 -4.4727 15 1 0.3034 -5.7708 -5.1599 16 6 0.8163 -7.8150 -4.7151 17 6 -1.4730 -6.8623 -4.7033 18 1 -2.1857 -6.7337 -3.9021 19 6 -1.8963 -7.3094 -5.9371 20 7 -1.0285 -7.4664 -6.9128 21 14 -3.7023 -7.6918 -6.2227 22 1 -3.8957 -8.1512 -7.6216 23 1 -4.1363 -8.7593 -5.2862 24 1 -4.5105 -6.4684 -5.9878 25 1 -0.3633 0.0031 1.0277 26 1 -0.3633 0.8884 -0.5164 27 1 -0.3633 -0.8915 -0.5112 28 1 1.7965 2.1464 0.0006 29 1 4.3078 1.7822 -0.0106 30 1 0.6947 -2.5178 0.5251 31 1 2.3419 -3.1920 0.5187 32 1 2.4135 -2.9939 -1.9520 33 1 0.7662 -2.3197 -1.9456 34 1 -0.0848 -4.4066 -0.9124 35 1 1.5623 -5.0814 -0.9187 36 1 0.6802 -7.5886 -1.7033 37 1 -0.4871 -6.3773 -1.1218 38 1 -1.0049 -7.6303 -2.2751 39 1 0.4975 -8.5986 -4.0279 40 1 0.6747 -8.1520 -5.7420 41 1 1.8703 -7.5922 -4.5483 42 1 -1.3262 -7.7813 -7.7806 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120521588.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:02 Heat of formation + Delta-G solvation = -41.507470 kcal Electronic energy + Delta-G solvation = -21186.803367 eV Core-core repulsion = 18064.144327 eV Total energy + Delta-G solvation = -3122.659040 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.75070 -39.42010 -37.20882 -35.66833 -34.75443 -32.20739 -31.23904 -29.73837 -27.51882 -27.31254 -26.61919 -24.06550 -23.06373 -22.06549 -19.85205 -19.22714 -18.53485 -18.13449 -17.65853 -17.01664 -16.79113 -16.16648 -15.94866 -15.37981 -14.97116 -14.71198 -14.35866 -14.13852 -13.85004 -13.73243 -13.55769 -13.27741 -13.14520 -13.06678 -12.91327 -12.74583 -12.69647 -12.66911 -12.47721 -12.41944 -12.20345 -12.11388 -12.08439 -11.71588 -11.44729 -11.19425 -10.63332 -10.44157 -9.45892 -9.28344 -9.20989 -8.14209 -6.31277 0.11400 0.77738 1.13748 1.41386 1.44140 1.51490 1.81000 1.88308 2.35035 2.55054 3.13480 3.76867 3.78951 4.04455 4.11098 4.27668 4.40324 4.44358 4.54921 4.64172 4.70434 4.72887 4.74339 4.79725 4.82181 4.86870 4.89638 4.93091 5.07109 5.10025 5.14072 5.15590 5.25501 5.39301 5.48338 5.58094 5.62643 5.68849 5.71292 6.05970 6.17494 6.77484 6.89948 7.34205 7.54229 8.90059 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.026270 B = 0.002922 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.618355 B = 9579.309507 C = 9912.297133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.121 4.121 3 C -0.140 4.140 4 C -0.218 4.218 5 S 0.068 5.932 6 C -0.186 4.186 7 C -0.040 4.040 8 C -0.089 4.089 9 C -0.123 4.123 10 C 0.487 3.513 11 O -0.611 6.611 12 N -0.604 5.604 13 C 0.079 3.921 14 C 0.260 3.740 15 H 0.004 0.996 16 C -0.131 4.131 17 C -0.539 4.539 18 H 0.063 0.937 19 C 0.012 3.988 20 N -0.920 5.920 21 Si 0.966 3.034 22 H -0.285 1.285 23 H -0.261 1.261 24 H -0.276 1.276 25 H 0.083 0.917 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.156 0.844 29 H 0.183 0.817 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.045 0.955 33 H 0.049 0.951 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.064 0.936 37 H 0.096 0.904 38 H 0.065 0.935 39 H 0.047 0.953 40 H 0.065 0.935 41 H 0.017 0.983 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.989 10.949 20.132 23.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.133 4.133 3 C -0.170 4.170 4 C -0.353 4.353 5 S 0.333 5.667 6 C -0.303 4.303 7 C -0.079 4.079 8 C -0.128 4.128 9 C -0.162 4.162 10 C 0.277 3.723 11 O -0.494 6.494 12 N -0.335 5.335 13 C -0.063 4.063 14 C 0.158 3.842 15 H 0.022 0.978 16 C -0.190 4.190 17 C -0.578 4.578 18 H 0.081 0.919 19 C -0.187 4.187 20 N -0.559 5.559 21 Si 0.791 3.209 22 H -0.210 1.210 23 H -0.185 1.185 24 H -0.202 1.202 25 H 0.102 0.898 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.174 0.826 29 H 0.200 0.800 30 H 0.121 0.879 31 H 0.107 0.893 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.083 0.917 37 H 0.114 0.886 38 H 0.084 0.916 39 H 0.066 0.934 40 H 0.084 0.916 41 H 0.036 0.964 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.525 10.388 19.474 23.016 hybrid contribution -1.802 0.668 -1.045 2.187 sum 4.723 11.055 18.428 22.003 Atomic orbital electron populations 1.20575 0.88759 1.03067 1.03033 1.19204 0.98485 0.91845 1.03748 1.20336 0.93078 0.99957 1.03667 1.25830 1.00267 0.98748 1.10435 1.84310 1.06750 1.01912 1.73749 1.24502 0.95500 0.99821 1.10526 1.20147 1.02275 0.89413 0.96021 1.21199 1.00586 0.94706 0.96295 1.21700 1.05013 0.98060 0.91433 1.21639 0.76579 0.81079 0.93000 1.90620 1.54176 1.55845 1.48797 1.48293 1.60994 1.15489 1.08684 1.21870 1.01151 0.94873 0.88420 1.18482 0.94794 0.92232 0.78723 0.97822 1.21863 0.95717 0.98583 1.02830 1.21584 0.93410 1.45005 0.97768 0.91866 1.25786 1.02268 0.95099 0.95535 1.70032 1.35822 1.46734 1.03297 0.85490 0.79392 0.78699 0.77330 1.21035 1.18508 1.20172 0.89808 0.90997 0.91803 0.82614 0.79960 0.87927 0.89274 0.93613 0.93171 0.86260 0.86360 0.91723 0.88556 0.91588 0.93383 0.91583 0.96360 0.92680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.62 9.60 71.24 0.68 -0.93 16 2 C -0.12 -2.49 5.80 -20.92 -0.12 -2.62 16 3 C -0.14 -2.62 9.98 21.22 0.21 -2.41 16 4 C -0.22 -3.98 11.23 66.72 0.75 -3.23 16 5 S 0.07 1.42 23.33 -56.49 -1.32 0.10 16 6 C -0.19 -4.04 5.76 24.58 0.14 -3.90 16 7 C -0.04 -0.75 5.07 29.85 0.15 -0.60 16 8 C -0.09 -2.36 4.49 30.59 0.14 -2.23 16 9 C -0.12 -3.15 4.25 29.85 0.13 -3.03 16 10 C 0.49 20.02 7.67 87.66 0.67 20.69 16 11 O -0.61 -31.91 15.31 -3.03 -0.05 -31.96 16 12 N -0.60 -25.52 2.75 -826.80 -2.28 -27.80 16 13 C 0.08 2.37 9.24 127.77 1.18 3.56 16 14 C 0.26 13.83 2.64 44.24 0.12 13.95 16 15 H 0.00 0.24 6.90 -2.39 -0.02 0.23 16 16 C -0.13 -6.49 8.97 71.98 0.65 -5.84 16 17 C -0.54 -29.62 7.99 25.60 0.20 -29.42 16 18 H 0.06 3.33 7.33 -2.91 -0.02 3.30 16 19 C 0.01 0.69 5.30 84.66 0.45 1.14 16 20 N -0.92 -54.02 11.32 21.45 0.24 -53.78 16 21 Si 0.97 43.23 29.54 68.60 2.03 45.25 16 22 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 23 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 24 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 25 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 26 H 0.07 1.11 8.13 -2.39 -0.02 1.09 16 27 H 0.06 1.17 6.95 -2.39 -0.02 1.16 16 28 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 29 H 0.18 2.36 8.06 -2.91 -0.02 2.34 16 30 H 0.10 1.55 7.33 -2.39 -0.02 1.53 16 31 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.04 1.42 8.10 -2.39 -0.02 1.40 16 33 H 0.05 1.55 7.79 -2.39 -0.02 1.53 16 34 H 0.12 2.37 7.40 -2.39 -0.02 2.35 16 35 H 0.12 2.34 8.11 -2.39 -0.02 2.32 16 36 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.10 2.07 6.44 -2.38 -0.02 2.05 16 38 H 0.07 2.18 7.02 -2.39 -0.02 2.17 16 39 H 0.05 2.13 7.67 -2.39 -0.02 2.11 16 40 H 0.07 3.62 6.07 -2.39 -0.01 3.61 16 41 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 42 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -73.38 353.78 4.97 -68.40 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: 0.99 Total: 14.64 kcal Atomic # 6 Polarization: -20.22 SS G_CDS: 5.35 Total: -14.87 kcal Atomic # 7 Polarization: -79.54 SS G_CDS: -2.03 Total: -81.57 kcal Atomic # 8 Polarization: -31.91 SS G_CDS: -0.05 Total: -31.96 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: 1.42 SS G_CDS: -1.32 Total: 0.10 kcal Total: -73.38 4.97 -68.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120521588.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.897 kcal (2) G-P(sol) polarization free energy of solvation -73.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds