Wall clock time and date at job start Tue Mar 31 2020 06:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38427 * 122.53770 * 2 1 4 4 C 1.33388 * 114.92122 * 180.27702 * 3 2 1 5 5 S 1.75877 * 109.59399 * 359.76990 * 4 3 2 6 6 C 1.33384 * 122.54115 * 179.83429 * 2 1 3 7 7 C 1.50702 * 125.20460 * 0.02562 * 6 2 1 8 8 C 1.53005 * 109.46741 * 89.72326 * 7 6 2 9 9 C 1.52996 * 109.46677 * 180.02562 * 8 7 6 10 10 C 1.50701 * 109.46917 * 179.97438 * 9 8 7 11 11 O 1.21282 * 119.99805 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00024 * 179.97438 * 10 9 8 13 13 C 1.46499 * 119.99836 * 359.97438 * 12 10 9 14 14 C 1.46500 * 119.99763 * 179.97438 * 12 10 9 15 15 H 1.09000 * 109.47381 * 359.97438 * 14 12 10 16 16 C 1.53006 * 109.47249 * 239.99831 * 14 12 10 17 17 C 1.50699 * 109.46939 * 120.00179 * 14 12 10 18 18 H 1.08003 * 120.00271 * 359.97438 * 17 14 12 19 19 C 1.37879 * 120.00161 * 179.97438 * 17 14 12 20 20 N 1.31509 * 119.99895 * 0.02562 * 19 17 14 21 21 Si 1.86803 * 120.00268 * 179.97438 * 19 17 14 22 22 H 1.48500 * 109.46809 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46948 * 120.00386 * 21 19 17 24 24 H 1.48497 * 109.47378 * 240.00673 * 21 19 17 25 25 H 1.09004 * 109.46800 * 270.16444 * 1 2 3 26 26 H 1.08996 * 109.47530 * 30.16920 * 1 2 3 27 27 H 1.09003 * 109.47059 * 150.17049 * 1 2 3 28 28 H 1.08007 * 122.53672 * 0.04489 * 3 2 1 29 29 H 1.07998 * 125.19887 * 179.74811 * 4 3 2 30 30 H 1.08996 * 109.46923 * 329.72110 * 7 6 2 31 31 H 1.08995 * 109.47137 * 209.72069 * 7 6 2 32 32 H 1.08993 * 109.47376 * 59.99712 * 8 7 6 33 33 H 1.09001 * 109.46711 * 299.99934 * 8 7 6 34 34 H 1.09004 * 109.47272 * 60.00013 * 9 8 7 35 35 H 1.09001 * 109.47336 * 299.99356 * 9 8 7 36 36 H 1.08993 * 109.47066 * 269.99701 * 13 12 10 37 37 H 1.09004 * 109.47229 * 30.00092 * 13 12 10 38 38 H 1.09000 * 109.47083 * 149.99916 * 13 12 10 39 39 H 1.09001 * 109.47002 * 60.00085 * 16 14 12 40 40 H 1.08993 * 109.46955 * 180.02562 * 16 14 12 41 41 H 1.09000 * 109.47050 * 300.00351 * 16 14 12 42 42 H 0.97006 * 120.00358 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2516 1.1670 0.0000 4 6 3.5737 0.9902 -0.0058 5 16 3.9387 -0.7303 -0.0052 6 6 2.2245 -1.1244 0.0033 7 6 1.6538 -2.5192 0.0067 8 6 1.4548 -2.9923 -1.4347 9 6 0.8747 -4.4081 -1.4311 10 6 0.6781 -4.8739 -2.8508 11 8 0.9724 -4.1450 -3.7744 12 7 0.1752 -6.1004 -3.0940 13 6 -0.1798 -6.9810 -1.9783 14 6 -0.0165 -6.5530 -4.4741 15 1 0.3007 -5.7685 -5.1612 16 6 -1.4958 -6.8668 -4.7072 17 6 0.8041 -7.7939 -4.7144 18 1 1.4084 -8.2042 -3.9187 19 6 0.7836 -8.4055 -5.9499 20 7 0.0483 -7.9057 -6.9189 21 14 1.8014 -9.9433 -6.2479 22 1 2.5351 -10.2994 -5.0069 23 1 0.9051 -11.0635 -6.6313 24 1 2.7727 -9.6897 -7.3422 25 1 -0.3633 0.0029 1.0277 26 1 -0.3634 0.8884 -0.5164 27 1 -0.3633 -0.8915 -0.5112 28 1 1.7964 2.1465 0.0007 29 1 4.3076 1.7824 -0.0107 30 1 0.6947 -2.5180 0.5245 31 1 2.3419 -3.1921 0.5182 32 1 2.4139 -2.9935 -1.9524 33 1 0.7666 -2.3193 -1.9461 34 1 -0.0845 -4.4064 -0.9135 35 1 1.5626 -5.0813 -0.9195 36 1 0.6832 -7.5885 -1.7062 37 1 -0.4845 -6.3784 -1.1226 38 1 -1.0024 -7.6312 -2.2761 39 1 -2.0894 -5.9693 -4.5334 40 1 -1.6382 -7.2039 -5.7339 41 1 -1.8134 -7.6512 -4.0202 42 1 0.0341 -8.3358 -7.7883 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120521751.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:06 Heat of formation + Delta-G solvation = -23.265847 kcal Electronic energy + Delta-G solvation = -21176.365561 eV Core-core repulsion = 18054.497537 eV Total energy + Delta-G solvation = -3121.868024 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.18689 -38.56940 -35.49333 -34.52225 -32.83151 -31.11034 -29.74200 -28.62795 -26.13631 -25.63505 -25.16603 -23.05431 -21.93225 -20.53660 -18.52362 -18.17267 -17.26942 -16.52770 -16.04368 -15.63418 -15.32672 -15.08034 -14.27181 -14.17329 -14.12761 -13.24474 -13.17501 -12.88117 -12.63368 -12.54785 -12.30598 -12.10345 -11.99778 -11.74487 -11.63358 -11.50653 -11.45367 -11.05941 -11.03978 -10.83840 -10.77347 -10.65149 -10.51313 -10.21959 -10.15375 -9.14503 -8.88487 -8.64028 -8.41221 -8.40206 -7.54223 -6.05695 -4.13511 0.91227 1.56368 1.92838 2.58897 3.26549 3.34287 3.37082 3.46448 4.00289 4.41072 4.66248 4.80996 4.97379 5.05669 5.21586 5.25298 5.26519 5.34157 5.46113 5.51847 5.54668 5.65936 5.69767 5.72235 5.83498 5.91559 5.96107 6.08501 6.25358 6.31912 6.33647 6.44381 6.51631 6.78083 6.84195 7.08226 7.47291 7.55671 7.74193 8.04191 8.22485 8.58250 8.86405 9.11779 9.53270 10.99620 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.026245 B = 0.002920 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.597752 B = 9587.863484 C = 9960.907567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.113 4.113 3 C -0.128 4.128 4 C -0.220 4.220 5 S 0.092 5.908 6 C -0.165 4.165 7 C -0.050 4.050 8 C -0.097 4.097 9 C -0.139 4.139 10 C 0.501 3.499 11 O -0.554 6.554 12 N -0.596 5.596 13 C 0.087 3.913 14 C 0.256 3.744 15 H 0.063 0.937 16 C -0.147 4.147 17 C -0.524 4.524 18 H 0.059 0.941 19 C 0.063 3.937 20 N -0.888 5.888 21 Si 0.898 3.102 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.283 1.283 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.137 0.863 29 H 0.161 0.839 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.047 0.953 37 H 0.052 0.948 38 H 0.071 0.929 39 H 0.011 0.989 40 H 0.093 0.907 41 H 0.029 0.971 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.528 12.940 17.367 21.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.158 4.158 4 C -0.356 4.356 5 S 0.357 5.643 6 C -0.283 4.283 7 C -0.089 4.089 8 C -0.135 4.135 9 C -0.179 4.179 10 C 0.288 3.712 11 O -0.433 6.433 12 N -0.327 5.327 13 C -0.057 4.057 14 C 0.156 3.844 15 H 0.080 0.920 16 C -0.205 4.205 17 C -0.563 4.563 18 H 0.077 0.923 19 C -0.139 4.139 20 N -0.527 5.527 21 Si 0.726 3.274 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.209 1.209 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.154 0.846 29 H 0.179 0.821 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.090 0.910 39 H 0.030 0.970 40 H 0.112 0.888 41 H 0.049 0.951 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.004 12.426 16.666 21.004 hybrid contribution -0.637 -0.082 -0.177 0.666 sum 2.367 12.344 16.489 20.733 Atomic orbital electron populations 1.20527 0.89817 1.03056 1.01995 1.18843 0.97474 0.91585 1.04618 1.20039 0.92880 0.99206 1.03715 1.25510 0.99718 0.99026 1.11317 1.84322 1.06297 1.00483 1.73220 1.24338 0.95428 0.99216 1.09275 1.20222 1.00838 0.89576 0.98290 1.21321 1.02687 0.95057 0.94471 1.21696 1.02471 0.97790 0.95958 1.20430 0.78019 0.82038 0.90726 1.90648 1.51645 1.54705 1.46329 1.48251 1.61317 1.13900 1.09238 1.21542 1.00776 0.94572 0.88779 1.18923 0.92966 0.95823 0.76668 0.91951 1.22094 0.96993 0.97362 1.04091 1.21371 1.27053 1.10320 0.97509 0.92288 1.24903 0.95527 0.97607 0.95838 1.69891 1.39590 1.40120 1.03069 0.86446 0.80037 0.82684 0.78262 1.19831 1.20954 1.20909 0.91479 0.91609 0.91112 0.84554 0.82141 0.89932 0.90791 0.91007 0.90912 0.89569 0.89520 0.93407 0.92926 0.90993 0.97013 0.88840 0.95147 0.92772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.85 9.60 36.01 0.35 -0.51 16 2 C -0.11 -1.23 5.80 -106.25 -0.62 -1.85 16 3 C -0.13 -1.28 9.98 -41.21 -0.41 -1.69 16 4 C -0.22 -2.17 11.23 29.04 0.33 -1.85 16 5 S 0.09 1.00 23.33 -107.50 -2.51 -1.50 16 6 C -0.17 -1.89 5.76 -36.00 -0.21 -2.10 16 7 C -0.05 -0.53 5.07 -27.88 -0.14 -0.67 16 8 C -0.10 -1.32 4.49 -26.73 -0.12 -1.44 16 9 C -0.14 -1.96 4.25 -27.88 -0.12 -2.08 16 10 C 0.50 10.29 7.67 -10.98 -0.08 10.21 16 11 O -0.55 -13.78 15.31 5.56 0.09 -13.70 16 12 N -0.60 -12.73 2.75 -175.26 -0.48 -13.21 16 13 C 0.09 1.44 9.48 59.85 0.57 2.01 16 14 C 0.26 6.63 2.64 -69.08 -0.18 6.45 16 15 H 0.06 1.88 6.90 -51.93 -0.36 1.52 16 16 C -0.15 -3.54 8.95 37.16 0.33 -3.21 16 17 C -0.52 -14.33 8.37 -34.44 -0.29 -14.62 16 18 H 0.06 1.59 7.65 -52.48 -0.40 1.19 16 19 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 20 N -0.89 -25.40 11.32 55.43 0.63 -24.78 16 21 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 27 H 0.07 0.66 6.95 -51.93 -0.36 0.30 16 28 H 0.14 1.09 8.06 -52.48 -0.42 0.66 16 29 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 30 H 0.08 0.75 7.33 -51.93 -0.38 0.37 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 33 H 0.07 1.08 7.79 -51.93 -0.40 0.68 16 34 H 0.09 1.00 7.40 -51.93 -0.38 0.62 16 35 H 0.09 1.08 8.11 -51.93 -0.42 0.66 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.05 0.66 6.44 -51.93 -0.33 0.33 16 38 H 0.07 1.21 6.43 -51.93 -0.33 0.88 16 39 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 41 H 0.03 0.67 6.66 -51.93 -0.35 0.32 16 42 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 353.10 15.07 5.32 5.32 Total: -1.00 -32.00 353.10 -9.22 -41.23 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -6.55 Total: 0.14 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -0.69 Total: -9.70 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: 0.14 Total: -37.99 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: 0.09 Total: -13.70 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 1.00 SS G_CDS: -2.51 Total: -1.50 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.00 -9.22 -41.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120521751.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.963 kcal (2) G-P(sol) polarization free energy of solvation -32.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds