Wall clock time and date at job start Tue Mar 31 2020 06:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38427 * 122.53770 * 2 1 4 4 C 1.33388 * 114.92122 * 180.27702 * 3 2 1 5 5 S 1.75877 * 109.59399 * 359.76990 * 4 3 2 6 6 C 1.33384 * 122.54115 * 179.83429 * 2 1 3 7 7 C 1.50702 * 125.20460 * 0.02562 * 6 2 1 8 8 C 1.53005 * 109.46741 * 89.72326 * 7 6 2 9 9 C 1.52996 * 109.46677 * 180.02562 * 8 7 6 10 10 C 1.50701 * 109.46917 * 179.97438 * 9 8 7 11 11 O 1.21282 * 119.99805 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00024 * 179.97438 * 10 9 8 13 13 C 1.46499 * 119.99836 * 359.97438 * 12 10 9 14 14 C 1.46500 * 119.99763 * 179.97438 * 12 10 9 15 15 H 1.09000 * 109.47381 * 359.97438 * 14 12 10 16 16 C 1.53006 * 109.47249 * 239.99831 * 14 12 10 17 17 C 1.50699 * 109.46939 * 120.00179 * 14 12 10 18 18 H 1.08003 * 120.00271 * 359.97438 * 17 14 12 19 19 C 1.37879 * 120.00161 * 179.97438 * 17 14 12 20 20 N 1.31509 * 119.99895 * 0.02562 * 19 17 14 21 21 Si 1.86803 * 120.00268 * 179.97438 * 19 17 14 22 22 H 1.48500 * 109.46809 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46948 * 120.00386 * 21 19 17 24 24 H 1.48497 * 109.47378 * 240.00673 * 21 19 17 25 25 H 1.09004 * 109.46800 * 270.16444 * 1 2 3 26 26 H 1.08996 * 109.47530 * 30.16920 * 1 2 3 27 27 H 1.09003 * 109.47059 * 150.17049 * 1 2 3 28 28 H 1.08007 * 122.53672 * 0.04489 * 3 2 1 29 29 H 1.07998 * 125.19887 * 179.74811 * 4 3 2 30 30 H 1.08996 * 109.46923 * 329.72110 * 7 6 2 31 31 H 1.08995 * 109.47137 * 209.72069 * 7 6 2 32 32 H 1.08993 * 109.47376 * 59.99712 * 8 7 6 33 33 H 1.09001 * 109.46711 * 299.99934 * 8 7 6 34 34 H 1.09004 * 109.47272 * 60.00013 * 9 8 7 35 35 H 1.09001 * 109.47336 * 299.99356 * 9 8 7 36 36 H 1.08993 * 109.47066 * 269.99701 * 13 12 10 37 37 H 1.09004 * 109.47229 * 30.00092 * 13 12 10 38 38 H 1.09000 * 109.47083 * 149.99916 * 13 12 10 39 39 H 1.09001 * 109.47002 * 60.00085 * 16 14 12 40 40 H 1.08993 * 109.46955 * 180.02562 * 16 14 12 41 41 H 1.09000 * 109.47050 * 300.00351 * 16 14 12 42 42 H 0.97006 * 120.00358 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2516 1.1670 0.0000 4 6 3.5737 0.9902 -0.0058 5 16 3.9387 -0.7303 -0.0052 6 6 2.2245 -1.1244 0.0033 7 6 1.6538 -2.5192 0.0067 8 6 1.4548 -2.9923 -1.4347 9 6 0.8747 -4.4081 -1.4311 10 6 0.6781 -4.8739 -2.8508 11 8 0.9724 -4.1450 -3.7744 12 7 0.1752 -6.1004 -3.0940 13 6 -0.1798 -6.9810 -1.9783 14 6 -0.0165 -6.5530 -4.4741 15 1 0.3007 -5.7685 -5.1612 16 6 -1.4958 -6.8668 -4.7072 17 6 0.8041 -7.7939 -4.7144 18 1 1.4084 -8.2042 -3.9187 19 6 0.7836 -8.4055 -5.9499 20 7 0.0483 -7.9057 -6.9189 21 14 1.8014 -9.9433 -6.2479 22 1 2.5351 -10.2994 -5.0069 23 1 0.9051 -11.0635 -6.6313 24 1 2.7727 -9.6897 -7.3422 25 1 -0.3633 0.0029 1.0277 26 1 -0.3634 0.8884 -0.5164 27 1 -0.3633 -0.8915 -0.5112 28 1 1.7964 2.1465 0.0007 29 1 4.3076 1.7824 -0.0107 30 1 0.6947 -2.5180 0.5245 31 1 2.3419 -3.1921 0.5182 32 1 2.4139 -2.9935 -1.9524 33 1 0.7666 -2.3193 -1.9461 34 1 -0.0845 -4.4064 -0.9135 35 1 1.5626 -5.0813 -0.9195 36 1 0.6832 -7.5885 -1.7062 37 1 -0.4845 -6.3784 -1.1226 38 1 -1.0024 -7.6312 -2.2761 39 1 -2.0894 -5.9693 -4.5334 40 1 -1.6382 -7.2039 -5.7339 41 1 -1.8134 -7.6512 -4.0202 42 1 0.0341 -8.3358 -7.7883 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120521751.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:05 Heat of formation + Delta-G solvation = -40.979860 kcal Electronic energy + Delta-G solvation = -21177.133698 eV Core-core repulsion = 18054.497537 eV Total energy + Delta-G solvation = -3122.636161 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.75283 -39.41740 -37.21546 -35.66714 -34.76275 -32.20649 -31.23352 -29.73010 -27.56697 -27.29432 -26.61715 -24.06235 -23.05920 -22.05830 -19.84959 -19.22177 -18.52725 -18.16157 -17.65250 -17.00837 -16.80493 -16.19854 -15.93577 -15.36604 -14.96537 -14.73023 -14.40120 -14.20595 -13.84922 -13.74887 -13.49402 -13.27850 -13.17228 -13.05825 -12.94180 -12.73935 -12.70216 -12.62231 -12.46847 -12.41024 -12.17570 -12.12236 -12.08970 -11.71216 -11.44460 -11.16164 -10.64382 -10.45230 -9.45971 -9.28512 -9.21398 -8.15006 -6.31851 0.11601 0.77761 1.14343 1.39623 1.41390 1.52749 1.81345 1.88150 2.34720 2.54449 3.12612 3.76739 3.78889 4.04543 4.11467 4.27579 4.40194 4.43373 4.55144 4.64245 4.69245 4.71715 4.74824 4.77692 4.85832 4.88364 4.89096 4.92773 5.05897 5.10671 5.14716 5.15700 5.25540 5.39576 5.47280 5.58412 5.64930 5.69494 5.71994 6.05665 6.17179 6.77253 6.89913 7.33911 7.54052 8.89389 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.026245 B = 0.002920 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.597752 B = 9587.863484 C = 9960.907567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.120 4.120 3 C -0.139 4.139 4 C -0.218 4.218 5 S 0.062 5.938 6 C -0.186 4.186 7 C -0.040 4.040 8 C -0.089 4.089 9 C -0.123 4.123 10 C 0.487 3.513 11 O -0.611 6.611 12 N -0.604 5.604 13 C 0.082 3.918 14 C 0.259 3.741 15 H 0.004 0.996 16 C -0.132 4.132 17 C -0.537 4.537 18 H 0.060 0.940 19 C 0.012 3.988 20 N -0.919 5.919 21 Si 0.965 3.035 22 H -0.264 1.264 23 H -0.273 1.273 24 H -0.286 1.286 25 H 0.084 0.916 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.157 0.843 29 H 0.183 0.817 30 H 0.105 0.895 31 H 0.086 0.914 32 H 0.041 0.959 33 H 0.053 0.947 34 H 0.125 0.875 35 H 0.113 0.887 36 H 0.053 0.947 37 H 0.101 0.899 38 H 0.067 0.933 39 H 0.020 0.980 40 H 0.066 0.934 41 H 0.049 0.951 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.231 12.531 20.136 23.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.132 4.132 3 C -0.170 4.170 4 C -0.353 4.353 5 S 0.327 5.673 6 C -0.303 4.303 7 C -0.079 4.079 8 C -0.128 4.128 9 C -0.162 4.162 10 C 0.277 3.723 11 O -0.494 6.494 12 N -0.335 5.335 13 C -0.060 4.060 14 C 0.157 3.843 15 H 0.022 0.978 16 C -0.191 4.191 17 C -0.576 4.576 18 H 0.078 0.922 19 C -0.187 4.187 20 N -0.558 5.558 21 Si 0.790 3.210 22 H -0.188 1.188 23 H -0.199 1.199 24 H -0.212 1.212 25 H 0.102 0.898 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.175 0.825 29 H 0.200 0.800 30 H 0.124 0.876 31 H 0.104 0.896 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.143 0.857 35 H 0.131 0.869 36 H 0.072 0.928 37 H 0.120 0.880 38 H 0.086 0.914 39 H 0.039 0.961 40 H 0.084 0.916 41 H 0.068 0.932 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.695 12.002 19.485 23.043 hybrid contribution -0.544 0.140 -1.062 1.202 sum 2.151 12.141 18.423 22.169 Atomic orbital electron populations 1.20579 0.88560 1.03163 1.03082 1.19214 0.98589 0.91729 1.03649 1.20349 0.93017 1.00014 1.03588 1.25827 1.00332 0.98629 1.10502 1.84380 1.07046 1.02078 1.73797 1.24503 0.95344 0.99872 1.10600 1.20150 1.02328 0.89349 0.96025 1.21201 1.00550 0.94743 0.96290 1.21706 1.05125 0.97966 0.91429 1.21638 0.76500 0.81140 0.93006 1.90620 1.53803 1.56176 1.48809 1.48291 1.61465 1.15044 1.08681 1.21834 1.00940 0.94750 0.88468 1.18501 0.93584 0.93517 0.78721 0.97762 1.21873 0.96149 0.98215 1.02855 1.21633 1.27371 1.10771 0.97809 0.92181 1.25767 0.96587 1.00726 0.95599 1.70035 1.40799 1.41511 1.03461 0.85399 0.78427 0.78994 0.78146 1.18835 1.19875 1.21217 0.89789 0.90921 0.91629 0.82506 0.80012 0.87633 0.89564 0.94000 0.92769 0.85709 0.86895 0.92794 0.88046 0.91391 0.96100 0.91573 0.93200 0.92680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.51 9.60 71.24 0.68 -0.82 16 2 C -0.12 -2.42 5.80 -20.92 -0.12 -2.54 16 3 C -0.14 -2.57 9.98 21.22 0.21 -2.36 16 4 C -0.22 -4.01 11.23 66.72 0.75 -3.26 16 5 S 0.06 1.33 23.33 -56.49 -1.32 0.01 16 6 C -0.19 -4.03 5.76 24.59 0.14 -3.89 16 7 C -0.04 -0.75 5.07 29.85 0.15 -0.60 16 8 C -0.09 -2.36 4.49 30.59 0.14 -2.22 16 9 C -0.12 -3.15 4.25 29.85 0.13 -3.02 16 10 C 0.49 19.99 7.67 87.66 0.67 20.66 16 11 O -0.61 -31.84 15.31 -3.04 -0.05 -31.89 16 12 N -0.60 -25.52 2.75 -826.79 -2.28 -27.79 16 13 C 0.08 2.48 9.48 127.77 1.21 3.69 16 14 C 0.26 13.76 2.64 44.25 0.12 13.88 16 15 H 0.00 0.28 6.90 -2.39 -0.02 0.27 16 16 C -0.13 -6.47 8.95 71.98 0.64 -5.83 16 17 C -0.54 -29.75 8.37 25.60 0.21 -29.53 16 18 H 0.06 3.23 7.65 -2.91 -0.02 3.21 16 19 C 0.01 0.69 5.30 84.66 0.45 1.14 16 20 N -0.92 -53.94 11.32 21.45 0.24 -53.70 16 21 Si 0.97 43.62 29.54 68.60 2.03 45.65 16 22 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 23 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 24 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 25 H 0.08 1.04 8.14 -2.39 -0.02 1.03 16 26 H 0.07 1.04 8.13 -2.39 -0.02 1.02 16 27 H 0.06 1.11 6.95 -2.39 -0.02 1.09 16 28 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 29 H 0.18 2.40 8.06 -2.91 -0.02 2.37 16 30 H 0.11 1.52 7.33 -2.39 -0.02 1.51 16 31 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.04 1.34 8.10 -2.39 -0.02 1.32 16 33 H 0.05 1.62 7.79 -2.39 -0.02 1.60 16 34 H 0.12 2.30 7.40 -2.39 -0.02 2.28 16 35 H 0.11 2.38 8.11 -2.39 -0.02 2.36 16 36 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.10 2.05 6.44 -2.39 -0.02 2.04 16 38 H 0.07 2.10 6.43 -2.39 -0.02 2.09 16 39 H 0.02 0.92 8.14 -2.39 -0.02 0.91 16 40 H 0.07 3.60 6.07 -2.39 -0.01 3.59 16 41 H 0.05 2.18 6.66 -2.39 -0.02 2.17 16 42 H 0.26 14.62 8.31 -92.70 -0.77 13.85 16 Total: -1.00 -73.81 353.10 5.01 -68.79 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 1.00 Total: 13.63 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: 5.39 Total: -14.70 kcal Atomic # 7 Polarization: -79.46 SS G_CDS: -2.03 Total: -81.49 kcal Atomic # 8 Polarization: -31.84 SS G_CDS: -0.05 Total: -31.89 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: 1.33 SS G_CDS: -1.32 Total: 0.01 kcal Total: -73.81 5.01 -68.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120521751.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.813 kcal (2) G-P(sol) polarization free energy of solvation -73.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds