Wall clock time and date at job start Tue Mar 31 2020 07:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47328 * 2 1 4 4 C 1.53000 * 109.47087 * 179.97438 * 3 2 1 5 5 H 1.08995 * 109.47202 * 305.00141 * 4 3 2 6 6 C 1.53001 * 109.46901 * 65.00199 * 4 3 2 7 7 C 1.50702 * 109.46898 * 184.99767 * 4 3 2 8 8 O 1.21294 * 120.00074 * 0.02562 * 7 4 3 9 9 N 1.34781 * 119.99519 * 179.72853 * 7 4 3 10 10 C 1.40093 * 119.99672 * 174.71439 * 9 7 4 11 11 C 1.38710 * 120.07731 * 335.19676 * 10 9 7 12 12 C 1.38188 * 120.01961 * 179.69958 * 11 10 9 13 13 C 1.38549 * 120.17395 * 0.59340 * 12 11 10 14 14 F 1.35100 * 119.92015 * 179.70388 * 13 12 11 15 15 C 1.38345 * 120.15683 * 359.68073 * 13 12 11 16 16 C 1.38735 * 119.97355 * 0.02562 * 15 13 12 17 17 O 1.35776 * 120.08661 * 180.02562 * 16 15 13 18 18 C 1.34811 * 116.99701 * 5.17017 * 17 16 15 19 19 H 1.07993 * 120.00081 * 354.97752 * 18 17 16 20 20 C 1.38634 * 119.99947 * 174.98448 * 18 17 16 21 21 N 1.31578 * 120.00189 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00201 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47362 * 89.99376 * 22 20 18 24 24 H 1.48498 * 109.47216 * 209.99796 * 22 20 18 25 25 H 1.48503 * 109.46662 * 329.99324 * 22 20 18 26 26 H 1.08999 * 109.46586 * 60.00279 * 1 2 3 27 27 H 1.08990 * 109.47128 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47028 * 300.00743 * 1 2 3 29 29 H 1.08995 * 109.47473 * 239.99493 * 2 1 3 30 30 H 1.09009 * 109.47092 * 119.99576 * 2 1 3 31 31 H 1.09002 * 109.46804 * 59.99851 * 3 2 1 32 32 H 1.08994 * 109.47122 * 299.99905 * 3 2 1 33 33 H 1.09008 * 109.47239 * 179.97438 * 6 4 3 34 34 H 1.09000 * 109.47149 * 299.99559 * 6 4 3 35 35 H 1.08996 * 109.47379 * 59.99430 * 6 4 3 36 36 H 0.96999 * 120.00576 * 354.71494 * 9 7 4 37 37 H 1.07998 * 119.98624 * 359.97438 * 11 10 9 38 38 H 1.08002 * 119.90728 * 180.29705 * 12 11 10 39 39 H 1.07999 * 120.00760 * 180.02562 * 15 13 12 40 40 H 0.96993 * 120.00076 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 1 3.9330 0.8532 0.8426 6 6 4.0805 0.8327 -1.3064 7 6 4.0723 2.8579 0.1244 8 8 3.2841 3.7763 0.2047 9 7 5.3975 3.1027 0.1519 10 6 5.8659 4.4230 0.1552 11 6 5.0827 5.4398 -0.3708 12 6 5.5433 6.7426 -0.3613 13 6 6.7924 7.0358 0.1616 14 9 7.2402 8.3105 0.1628 15 6 7.5820 6.0265 0.6829 16 6 7.1233 4.7172 0.6821 17 8 7.8961 3.7249 1.1936 18 6 9.0515 4.0915 1.7835 19 1 9.3648 5.1247 1.7618 20 6 9.8376 3.1420 2.4179 21 7 9.4558 1.8831 2.4447 22 14 11.4390 3.6498 3.2346 23 1 11.1782 4.0179 4.6495 24 1 12.3997 2.5184 3.1865 25 1 12.0123 4.8167 2.5171 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6767 1.9564 0.8900 32 1 1.6768 1.9564 -0.8899 33 1 5.1706 0.8330 -1.3062 34 1 3.7172 -0.1911 -1.3960 35 1 3.7175 1.4219 -2.1485 36 1 6.0268 2.3648 0.1694 37 1 4.1107 5.2138 -0.7838 38 1 4.9300 7.5336 -0.7670 39 1 8.5551 6.2578 1.0903 40 1 10.0060 1.2188 2.8883 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120584530.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:19 Heat of formation + Delta-G solvation = -103.707817 kcal Electronic energy + Delta-G solvation = -23548.220046 eV Core-core repulsion = 19856.650621 eV Total energy + Delta-G solvation = -3691.569426 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.25276 -40.29587 -38.78155 -36.58087 -35.76401 -34.13589 -32.42733 -32.03066 -29.43525 -28.31040 -26.65032 -25.54889 -24.14812 -22.45529 -21.66067 -20.77256 -19.48787 -18.36729 -17.85983 -16.79428 -16.66467 -15.72249 -15.25137 -15.23408 -14.95950 -14.61336 -14.35096 -14.25305 -13.97941 -13.66749 -13.52998 -13.27873 -13.04142 -12.61379 -12.29683 -12.28562 -12.18342 -11.92041 -11.68546 -11.44152 -11.24676 -11.04484 -10.96564 -10.84098 -10.71438 -10.56478 -10.53730 -9.81860 -9.75092 -9.21625 -8.97268 -7.89240 -7.07559 -6.62006 -4.19684 1.78464 2.10320 2.97224 3.05558 3.07162 3.11238 3.48123 3.83760 4.34210 4.71350 4.74288 4.83532 4.86709 4.95964 5.10781 5.11663 5.18293 5.27038 5.47282 5.60520 5.61103 5.72360 5.73754 5.79799 5.80715 5.92361 6.00164 6.04969 6.06979 6.23220 6.28600 6.35624 6.54634 6.71952 6.89881 6.93754 7.04356 7.17821 7.63468 7.81392 7.92634 8.52782 8.84068 9.44387 10.55171 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.012863 B = 0.004558 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.336911 B = 6141.760692 C = 8043.879614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.099 4.099 4 C -0.110 4.110 5 H 0.099 0.901 6 C -0.146 4.146 7 C 0.512 3.488 8 O -0.536 6.536 9 N -0.647 5.647 10 C 0.064 3.936 11 C -0.062 4.062 12 C -0.226 4.226 13 C 0.126 3.874 14 F -0.152 7.152 15 C -0.257 4.257 16 C 0.155 3.845 17 O -0.171 6.171 18 C -0.392 4.392 19 H 0.094 0.906 20 C 0.043 3.957 21 N -0.860 5.860 22 Si 0.942 3.058 23 H -0.272 1.272 24 H -0.276 1.276 25 H -0.266 1.266 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.417 0.583 37 H 0.147 0.853 38 H 0.122 0.878 39 H 0.143 0.857 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.737 -3.274 -5.377 11.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.137 4.137 4 C -0.131 4.131 5 H 0.117 0.883 6 C -0.204 4.204 7 C 0.300 3.700 8 O -0.414 6.414 9 N -0.290 5.290 10 C -0.030 4.030 11 C -0.083 4.083 12 C -0.246 4.246 13 C 0.106 3.894 14 F -0.131 7.131 15 C -0.278 4.278 16 C 0.099 3.901 17 O -0.074 6.074 18 C -0.468 4.468 19 H 0.112 0.888 20 C -0.162 4.162 21 N -0.494 5.494 22 Si 0.767 3.233 23 H -0.197 1.197 24 H -0.201 1.201 25 H -0.190 1.190 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.253 0.747 37 H 0.165 0.835 38 H 0.140 0.860 39 H 0.160 0.840 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.214 -3.118 -5.229 11.891 hybrid contribution 1.387 0.217 0.567 1.514 sum -8.827 -2.901 -4.662 10.396 Atomic orbital electron populations 1.21756 0.95924 1.01310 1.01916 1.21610 0.95836 0.96827 1.02143 1.21419 0.92272 0.96490 1.03505 1.21320 0.97684 0.93304 1.00830 0.88270 1.21838 1.01667 1.01157 0.95693 1.20710 0.81816 0.91500 0.75987 1.90614 1.55383 1.46090 1.49303 1.43256 1.07452 1.07123 1.71216 1.16965 0.93140 0.85105 1.07839 1.20773 0.99838 0.90492 0.97149 1.20498 0.96208 0.97356 1.10541 1.17463 0.93565 0.78007 1.00378 1.91409 1.89631 1.37265 1.94748 1.20845 1.03241 0.91798 1.11920 1.18724 0.89960 0.88065 0.93354 1.83894 1.30750 1.29303 1.63436 1.21340 0.95408 0.96126 1.33930 0.88823 1.25277 0.99567 0.94753 0.96564 1.70006 1.38073 1.00919 1.40402 0.85680 0.79622 0.78543 0.79485 1.19750 1.20139 1.19048 0.92781 0.92952 0.92720 0.91736 0.91949 0.91076 0.91333 0.91775 0.91248 0.92133 0.74684 0.83544 0.85957 0.83960 0.91815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.91 37.16 0.37 -0.90 16 2 C -0.13 -1.15 5.69 -26.73 -0.15 -1.31 16 3 C -0.10 -1.13 4.03 -26.73 -0.11 -1.24 16 4 C -0.11 -1.37 2.72 -91.77 -0.25 -1.62 16 5 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 6 C -0.15 -1.54 8.85 37.16 0.33 -1.21 16 7 C 0.51 8.53 6.96 -10.98 -0.08 8.46 16 8 O -0.54 -10.25 13.09 5.55 0.07 -10.18 16 9 N -0.65 -11.84 5.14 -9.71 -0.05 -11.89 16 10 C 0.06 1.33 6.45 -83.45 -0.54 0.80 16 11 C -0.06 -1.21 8.72 -39.43 -0.34 -1.55 16 12 C -0.23 -4.25 10.02 -39.48 -0.40 -4.64 16 13 C 0.13 2.54 7.29 -39.43 -0.29 2.25 16 14 F -0.15 -2.93 17.26 2.25 0.04 -2.89 16 15 C -0.26 -5.65 9.14 -39.36 -0.36 -6.01 16 16 C 0.15 3.57 6.66 -38.94 -0.26 3.31 16 17 O -0.17 -4.44 9.17 0.02 0.00 -4.44 16 18 C -0.39 -10.31 9.49 30.88 0.29 -10.02 16 19 H 0.09 2.32 5.20 -52.49 -0.27 2.05 16 20 C 0.04 1.12 5.49 -17.51 -0.10 1.02 16 21 N -0.86 -23.31 13.67 55.48 0.76 -22.55 16 22 Si 0.94 19.63 29.55 -169.99 -5.02 14.61 16 23 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 24 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 25 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.53 6.57 -51.93 -0.34 0.19 16 30 H 0.06 0.56 8.14 -51.92 -0.42 0.13 16 31 H 0.07 0.91 7.95 -51.93 -0.41 0.50 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.06 0.70 7.71 -51.92 -0.40 0.30 16 34 H 0.07 0.60 6.57 -51.93 -0.34 0.26 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.42 7.39 7.95 -40.82 -0.32 7.06 16 37 H 0.15 2.76 5.79 -52.49 -0.30 2.45 16 38 H 0.12 1.99 8.06 -52.49 -0.42 1.56 16 39 H 0.14 3.12 5.63 -52.49 -0.30 2.82 16 40 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 337.37 15.07 5.08 5.08 Total: -1.00 -28.94 337.37 -6.20 -35.14 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -5.21 Total: 9.76 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: -1.88 Total: -12.65 kcal Atomic # 7 Polarization: -35.15 SS G_CDS: 0.71 Total: -34.44 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: 0.07 Total: -14.62 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.04 Total: -2.89 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.61 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.94 -6.20 -35.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120584530.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.564 kcal (2) G-P(sol) polarization free energy of solvation -28.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds