Wall clock time and date at job start Tue Mar 31 2020 07:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47328 * 2 1 4 4 C 1.53000 * 109.47087 * 179.97438 * 3 2 1 5 5 H 1.08995 * 109.47202 * 305.00141 * 4 3 2 6 6 C 1.53001 * 109.46901 * 65.00199 * 4 3 2 7 7 C 1.50702 * 109.46898 * 184.99767 * 4 3 2 8 8 O 1.21294 * 120.00074 * 0.02562 * 7 4 3 9 9 N 1.34781 * 119.99519 * 179.72853 * 7 4 3 10 10 C 1.40093 * 119.99672 * 174.71439 * 9 7 4 11 11 C 1.38710 * 120.07731 * 335.19676 * 10 9 7 12 12 C 1.38188 * 120.01961 * 179.69958 * 11 10 9 13 13 C 1.38549 * 120.17395 * 0.59340 * 12 11 10 14 14 F 1.35100 * 119.92015 * 179.70388 * 13 12 11 15 15 C 1.38345 * 120.15683 * 359.68073 * 13 12 11 16 16 C 1.38735 * 119.97355 * 0.02562 * 15 13 12 17 17 O 1.35776 * 120.08661 * 180.02562 * 16 15 13 18 18 C 1.34811 * 116.99701 * 5.17017 * 17 16 15 19 19 H 1.07993 * 120.00081 * 354.97752 * 18 17 16 20 20 C 1.38634 * 119.99947 * 174.98448 * 18 17 16 21 21 N 1.31578 * 120.00189 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00201 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47362 * 89.99376 * 22 20 18 24 24 H 1.48498 * 109.47216 * 209.99796 * 22 20 18 25 25 H 1.48503 * 109.46662 * 329.99324 * 22 20 18 26 26 H 1.08999 * 109.46586 * 60.00279 * 1 2 3 27 27 H 1.08990 * 109.47128 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47028 * 300.00743 * 1 2 3 29 29 H 1.08995 * 109.47473 * 239.99493 * 2 1 3 30 30 H 1.09009 * 109.47092 * 119.99576 * 2 1 3 31 31 H 1.09002 * 109.46804 * 59.99851 * 3 2 1 32 32 H 1.08994 * 109.47122 * 299.99905 * 3 2 1 33 33 H 1.09008 * 109.47239 * 179.97438 * 6 4 3 34 34 H 1.09000 * 109.47149 * 299.99559 * 6 4 3 35 35 H 1.08996 * 109.47379 * 59.99430 * 6 4 3 36 36 H 0.96999 * 120.00576 * 354.71494 * 9 7 4 37 37 H 1.07998 * 119.98624 * 359.97438 * 11 10 9 38 38 H 1.08002 * 119.90728 * 180.29705 * 12 11 10 39 39 H 1.07999 * 120.00760 * 180.02562 * 15 13 12 40 40 H 0.96993 * 120.00076 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 1 3.9330 0.8532 0.8426 6 6 4.0805 0.8327 -1.3064 7 6 4.0723 2.8579 0.1244 8 8 3.2841 3.7763 0.2047 9 7 5.3975 3.1027 0.1519 10 6 5.8659 4.4230 0.1552 11 6 5.0827 5.4398 -0.3708 12 6 5.5433 6.7426 -0.3613 13 6 6.7924 7.0358 0.1616 14 9 7.2402 8.3105 0.1628 15 6 7.5820 6.0265 0.6829 16 6 7.1233 4.7172 0.6821 17 8 7.8961 3.7249 1.1936 18 6 9.0515 4.0915 1.7835 19 1 9.3648 5.1247 1.7618 20 6 9.8376 3.1420 2.4179 21 7 9.4558 1.8831 2.4447 22 14 11.4390 3.6498 3.2346 23 1 11.1782 4.0179 4.6495 24 1 12.3997 2.5184 3.1865 25 1 12.0123 4.8167 2.5171 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6767 1.9564 0.8900 32 1 1.6768 1.9564 -0.8899 33 1 5.1706 0.8330 -1.3062 34 1 3.7172 -0.1911 -1.3960 35 1 3.7175 1.4219 -2.1485 36 1 6.0268 2.3648 0.1694 37 1 4.1107 5.2138 -0.7838 38 1 4.9300 7.5336 -0.7670 39 1 8.5551 6.2578 1.0903 40 1 10.0060 1.2188 2.8883 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120584530.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:18 Heat of formation + Delta-G solvation = -119.571902 kcal Electronic energy + Delta-G solvation = -23548.907965 eV Core-core repulsion = 19856.650621 eV Total energy + Delta-G solvation = -3692.257344 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.84711 -41.78909 -40.39171 -38.16410 -36.87009 -35.64060 -34.32066 -32.93711 -31.11038 -29.88939 -27.49749 -27.43020 -25.31130 -24.01341 -23.12495 -21.87463 -20.75282 -20.17315 -19.51277 -18.27989 -18.13316 -17.11717 -16.96278 -16.58017 -16.41735 -15.99256 -15.84558 -15.63348 -15.45397 -15.23254 -14.84695 -14.72766 -14.15844 -13.97057 -13.77493 -13.51909 -13.41774 -13.10896 -13.06584 -12.73523 -12.62515 -12.36582 -12.15029 -12.10499 -11.79754 -11.74622 -11.66749 -11.40118 -11.25868 -10.84987 -10.62678 -9.58477 -8.73699 -8.52277 -6.18150 0.14671 0.42854 1.36871 1.43588 1.51896 1.58061 2.07745 2.15448 2.66048 3.00582 3.17287 3.43144 3.57590 3.81014 3.92323 3.97637 4.13507 4.30904 4.33048 4.38814 4.40244 4.60318 4.67466 4.82337 4.90966 4.91985 4.94925 4.99862 5.04899 5.14820 5.20098 5.23829 5.28737 5.32661 5.34168 5.45907 5.50964 5.55569 5.91930 6.01356 6.47255 6.92340 7.10527 7.59879 8.68370 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.012863 B = 0.004558 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.336911 B = 6141.760692 C = 8043.879614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.094 4.094 4 C -0.103 4.103 5 H 0.108 0.892 6 C -0.142 4.142 7 C 0.510 3.490 8 O -0.560 6.560 9 N -0.651 5.651 10 C 0.064 3.936 11 C -0.064 4.064 12 C -0.202 4.202 13 C 0.119 3.881 14 F -0.145 7.145 15 C -0.263 4.263 16 C 0.128 3.872 17 O -0.203 6.203 18 C -0.417 4.417 19 H 0.099 0.901 20 C -0.007 4.007 21 N -0.904 5.904 22 Si 1.011 2.989 23 H -0.267 1.267 24 H -0.268 1.268 25 H -0.257 1.257 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.048 0.952 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.095 0.905 35 H 0.060 0.940 36 H 0.418 0.582 37 H 0.158 0.842 38 H 0.157 0.843 39 H 0.136 0.864 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.546 -3.190 -6.034 12.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.132 4.132 4 C -0.124 4.124 5 H 0.126 0.874 6 C -0.199 4.199 7 C 0.300 3.700 8 O -0.439 6.439 9 N -0.294 5.294 10 C -0.031 4.031 11 C -0.085 4.085 12 C -0.222 4.222 13 C 0.099 3.901 14 F -0.123 7.123 15 C -0.284 4.284 16 C 0.074 3.926 17 O -0.109 6.109 18 C -0.493 4.493 19 H 0.116 0.884 20 C -0.207 4.207 21 N -0.540 5.540 22 Si 0.831 3.169 23 H -0.192 1.192 24 H -0.193 1.193 25 H -0.181 1.181 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.067 0.933 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.114 0.886 35 H 0.079 0.921 36 H 0.254 0.746 37 H 0.175 0.825 38 H 0.175 0.825 39 H 0.154 0.846 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.058 -3.017 -5.909 12.896 hybrid contribution 1.428 0.321 0.666 1.608 sum -9.630 -2.697 -5.244 11.292 Atomic orbital electron populations 1.21762 0.95341 1.02123 1.01732 1.21591 0.96328 0.95030 1.03002 1.21391 0.91303 0.98077 1.02435 1.21395 0.98337 0.90367 1.02340 0.87424 1.21845 1.01318 1.02463 0.94318 1.21546 0.80797 0.93140 0.74476 1.90585 1.55696 1.47404 1.50259 1.43415 1.08266 1.06278 1.71438 1.17266 0.92521 0.86684 1.06667 1.20982 0.99999 0.90487 0.96993 1.20895 0.95450 0.97928 1.07881 1.17457 0.93939 0.77952 1.00762 1.91426 1.89639 1.36565 1.94713 1.20932 1.03377 0.92100 1.11973 1.19075 0.90892 0.88315 0.94271 1.83873 1.31345 1.30393 1.65241 1.21734 0.96099 0.96707 1.34751 0.88414 1.26365 1.02861 0.94644 0.96843 1.70110 1.39811 1.02048 1.42066 0.84681 0.75269 0.78564 0.78389 1.19188 1.19272 1.18113 0.92650 0.91639 0.93294 0.90313 0.91609 0.92854 0.91744 0.92349 0.88646 0.92076 0.74561 0.82472 0.82499 0.84602 0.91548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.91 71.98 0.71 -1.54 16 2 C -0.12 -1.96 5.69 30.60 0.17 -1.78 16 3 C -0.09 -2.03 4.03 30.60 0.12 -1.91 16 4 C -0.10 -2.45 2.72 -11.54 -0.03 -2.48 16 5 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 6 C -0.14 -2.73 8.85 71.98 0.64 -2.10 16 7 C 0.51 16.82 6.96 87.66 0.61 17.43 16 8 O -0.56 -21.11 13.09 -3.07 -0.04 -21.15 16 9 N -0.65 -24.01 5.14 -303.03 -1.56 -25.57 16 10 C 0.06 2.67 6.45 38.23 0.25 2.91 16 11 C -0.06 -2.41 8.72 22.37 0.19 -2.22 16 12 C -0.20 -7.12 10.02 22.33 0.22 -6.90 16 13 C 0.12 4.65 7.29 22.37 0.16 4.81 16 14 F -0.14 -5.34 17.26 44.97 0.78 -4.56 16 15 C -0.26 -11.66 9.14 22.41 0.20 -11.45 16 16 C 0.13 6.04 6.66 22.69 0.15 6.19 16 17 O -0.20 -10.98 9.17 -22.83 -0.21 -11.18 16 18 C -0.42 -22.65 9.49 67.91 0.64 -22.00 16 19 H 0.10 5.00 5.20 -2.91 -0.02 4.99 16 20 C -0.01 -0.38 5.49 84.83 0.47 0.08 16 21 N -0.90 -50.40 13.67 21.61 0.30 -50.10 16 22 Si 1.01 40.56 29.55 68.60 2.03 42.59 16 23 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 24 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 25 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 26 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.06 0.80 8.14 -2.39 -0.02 0.79 16 28 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.08 1.06 6.57 -2.39 -0.02 1.04 16 30 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 31 H 0.05 1.34 7.95 -2.39 -0.02 1.32 16 32 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.06 1.20 7.71 -2.38 -0.02 1.19 16 34 H 0.09 1.36 6.57 -2.39 -0.02 1.35 16 35 H 0.06 1.17 8.14 -2.39 -0.02 1.16 16 36 H 0.42 15.22 7.95 -92.71 -0.74 14.48 16 37 H 0.16 5.65 5.79 -2.91 -0.02 5.63 16 38 H 0.16 4.47 8.06 -2.91 -0.02 4.45 16 39 H 0.14 6.10 5.63 -2.91 -0.02 6.08 16 40 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 Total: -1.00 -63.24 337.37 6.15 -57.09 By element: Atomic # 1 Polarization: 33.49 SS G_CDS: 0.34 Total: 33.83 kcal Atomic # 6 Polarization: -25.46 SS G_CDS: 4.52 Total: -20.94 kcal Atomic # 7 Polarization: -74.41 SS G_CDS: -1.26 Total: -75.67 kcal Atomic # 8 Polarization: -32.08 SS G_CDS: -0.25 Total: -32.33 kcal Atomic # 9 Polarization: -5.34 SS G_CDS: 0.78 Total: -4.56 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.59 kcal Total: -63.24 6.15 -57.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120584530.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.479 kcal (2) G-P(sol) polarization free energy of solvation -63.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds