Wall clock time and date at job start Tue Mar 31 2020 07:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 O 1.42098 * 109.46902 * 2 1 4 4 C 1.76203 * 102.99776 * 250.94678 * 2 1 3 5 5 C 1.38283 * 119.92551 * 89.99888 * 4 2 1 6 6 C 1.38101 * 120.07597 * 179.97438 * 5 4 2 7 7 C 1.38912 * 119.92565 * 0.02562 * 6 5 4 8 8 N 1.39673 * 120.07315 * 179.97438 * 7 6 5 9 9 C 1.46506 * 119.99605 * 180.02562 * 8 7 6 10 10 C 1.53002 * 109.47035 * 180.02562 * 9 8 7 11 11 C 1.53000 * 109.46911 * 300.00027 * 10 9 8 12 12 C 1.53001 * 109.46963 * 59.99511 * 10 9 8 13 13 C 1.52996 * 109.46969 * 179.97438 * 10 9 8 14 14 C 1.50699 * 109.46861 * 179.97438 * 13 10 9 15 15 H 1.08003 * 119.99962 * 359.97438 * 14 13 10 16 16 C 1.37884 * 120.00200 * 180.02562 * 14 13 10 17 17 N 1.31516 * 119.99569 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00031 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47227 * 90.00066 * 18 16 14 20 20 H 1.48500 * 109.46628 * 209.99752 * 18 16 14 21 21 H 1.48493 * 109.47109 * 329.99411 * 18 16 14 22 22 C 1.38914 * 119.84917 * 0.25534 * 7 6 5 23 23 C 1.38106 * 119.92380 * 359.48549 * 22 7 6 24 24 H 1.08995 * 109.46748 * 169.05540 * 1 2 3 25 25 H 1.08999 * 109.46688 * 289.05055 * 1 2 3 26 26 H 1.08998 * 109.46771 * 49.05258 * 1 2 3 27 27 H 1.08009 * 119.96048 * 0.02562 * 5 4 2 28 28 H 1.08005 * 120.03673 * 179.97438 * 6 5 4 29 29 H 0.96999 * 120.00315 * 0.02562 * 8 7 6 30 30 H 1.09004 * 109.47073 * 299.99891 * 9 8 7 31 31 H 1.09000 * 109.47212 * 59.99974 * 9 8 7 32 32 H 1.09002 * 109.47398 * 60.00028 * 11 10 9 33 33 H 1.09001 * 109.47194 * 180.02562 * 11 10 9 34 34 H 1.09000 * 109.46968 * 300.00009 * 11 10 9 35 35 H 1.09004 * 109.47086 * 60.00354 * 12 10 9 36 36 H 1.09001 * 109.46652 * 180.02562 * 12 10 9 37 37 H 1.08992 * 109.47514 * 300.00067 * 12 10 9 38 38 H 1.08992 * 109.47534 * 299.99582 * 13 10 9 39 39 H 1.08996 * 109.47134 * 60.00388 * 13 10 9 40 40 H 0.97002 * 119.99797 * 180.02562 * 17 16 14 41 41 H 1.07998 * 120.03713 * 179.72784 * 22 7 6 42 42 H 1.07994 * 119.96460 * 180.25714 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2877 1.3397 0.0000 4 6 2.2104 -0.5605 -1.6228 5 6 2.3655 0.3529 -2.6494 6 6 2.6766 -0.0829 -3.9224 7 6 2.8332 -1.4406 -4.1711 8 7 3.1474 -1.8848 -5.4575 9 6 3.3116 -3.3171 -5.7181 10 6 3.6507 -3.5313 -7.1946 11 6 2.5173 -2.9815 -8.0631 12 6 4.9515 -2.7992 -7.5305 13 6 3.8228 -5.0270 -7.4666 14 6 4.1561 -5.2379 -8.9210 15 1 4.2367 -4.3900 -9.5851 16 6 4.3572 -6.5136 -9.4043 17 7 4.2586 -7.5461 -8.5957 18 14 4.7711 -6.7750 -11.2070 19 1 6.2449 -6.7422 -11.3863 20 1 4.2479 -8.0926 -11.6489 21 1 4.1496 -5.6980 -12.0187 22 6 2.6709 -2.3558 -3.1388 23 6 2.3651 -1.9128 -1.8670 24 1 -0.3633 -1.0090 -0.1951 25 1 -0.3633 0.3354 0.9714 26 1 -0.3633 0.6735 -0.7762 27 1 2.2440 1.4084 -2.4552 28 1 2.7972 0.6310 -4.7238 29 1 3.2568 -1.2450 -6.1784 30 1 4.1194 -3.7086 -5.0997 31 1 2.3850 -3.8386 -5.4784 32 1 2.3951 -1.9159 -7.8692 33 1 2.7586 -3.1345 -9.1150 34 1 1.5905 -3.5030 -7.8237 35 1 5.7590 -3.1908 -6.9118 36 1 5.1928 -2.9514 -8.5825 37 1 4.8293 -1.7337 -7.3367 38 1 4.6304 -5.4182 -6.8480 39 1 2.8963 -5.5488 -7.2272 40 1 4.4004 -8.4435 -8.9356 41 1 2.7876 -3.4124 -3.3298 42 1 2.2429 -2.6235 -1.0631 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121580476.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:10 Heat of formation + Delta-G solvation = -29.909836 kcal Electronic energy + Delta-G solvation = -21026.048403 eV Core-core repulsion = 17903.892274 eV Total energy + Delta-G solvation = -3122.156129 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.47904 -37.52348 -35.75184 -34.37119 -32.34462 -30.94597 -29.37160 -28.77730 -27.05017 -26.58304 -25.96025 -23.18986 -22.67354 -21.41392 -18.39198 -18.07238 -17.21922 -16.46054 -16.18570 -15.50430 -14.90926 -14.66178 -14.48811 -14.34216 -14.17596 -13.63697 -13.36653 -13.28531 -13.13885 -12.96158 -12.82013 -12.36263 -12.23233 -12.12296 -11.83790 -11.31838 -11.08273 -11.04261 -10.90690 -10.72149 -10.45867 -10.31768 -10.30359 -10.16804 -9.82914 -9.28938 -9.01163 -8.95104 -8.53378 -8.42700 -7.41487 -6.07198 -4.08337 1.14103 1.47253 1.94643 2.69797 3.26327 3.33580 3.35321 3.57822 3.71709 3.95405 4.39709 4.83789 4.99083 5.01307 5.10628 5.28602 5.32660 5.35865 5.49373 5.57366 5.66663 5.73706 5.78645 5.99515 6.03082 6.08018 6.15245 6.20046 6.28785 6.34133 6.40018 6.55718 6.56626 6.85610 6.96252 6.98968 7.02836 7.41335 7.54028 7.66331 7.79914 7.91180 8.33368 8.96091 9.55254 11.04288 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.043134 B = 0.002568 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.988925 B =10902.197862 C =11192.136648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.500 4.500 2 S 1.330 4.670 3 O -0.870 6.870 4 C -0.530 4.530 5 C -0.004 4.004 6 C -0.220 4.220 7 C 0.260 3.740 8 N -0.730 5.730 9 C 0.127 3.873 10 C -0.071 4.071 11 C -0.127 4.127 12 C -0.127 4.127 13 C 0.037 3.963 14 C -0.512 4.512 15 H 0.059 0.941 16 C 0.057 3.943 17 N -0.895 5.895 18 Si 0.889 3.111 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.275 1.275 22 C -0.217 4.217 23 C 0.005 3.995 24 H 0.108 0.892 25 H 0.099 0.901 26 H 0.077 0.923 27 H 0.120 0.880 28 H 0.118 0.882 29 H 0.400 0.600 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.028 0.972 33 H 0.067 0.933 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.067 0.933 37 H 0.028 0.972 38 H 0.018 0.982 39 H 0.018 0.982 40 H 0.260 0.740 41 H 0.129 0.871 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.565 10.331 15.909 19.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.656 4.656 2 S 1.528 4.472 3 O -0.865 6.865 4 C -0.631 4.631 5 C -0.024 4.024 6 C -0.245 4.245 7 C 0.151 3.849 8 N -0.355 5.355 9 C 0.004 3.996 10 C -0.071 4.071 11 C -0.184 4.184 12 C -0.184 4.184 13 C -0.001 4.001 14 C -0.550 4.550 15 H 0.077 0.923 16 C -0.144 4.144 17 N -0.534 5.534 18 Si 0.717 3.283 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.241 4.241 23 C -0.015 4.015 24 H 0.127 0.873 25 H 0.118 0.882 26 H 0.096 0.904 27 H 0.138 0.862 28 H 0.136 0.864 29 H 0.236 0.764 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.047 0.953 33 H 0.086 0.914 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.086 0.914 37 H 0.047 0.953 38 H 0.036 0.964 39 H 0.036 0.964 40 H 0.070 0.930 41 H 0.147 0.853 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.929 10.184 16.580 20.072 hybrid contribution -0.623 1.174 -3.199 3.464 sum -5.552 11.358 13.381 18.409 Atomic orbital electron populations 1.27811 1.23531 1.07653 1.06654 1.69100 0.85441 0.99251 0.93362 1.93065 1.73119 1.37487 1.82868 1.26987 1.20927 0.99551 1.15646 1.20711 0.91425 0.98736 0.91570 1.20631 1.12126 0.93755 0.97944 1.18133 0.88482 0.92628 0.85664 1.45284 1.74523 1.08596 1.07083 1.21706 1.00403 0.79382 0.98105 1.20873 0.94925 1.00650 0.90674 1.21754 0.97888 0.97427 1.01344 1.21754 0.97017 0.96831 1.02824 1.19087 0.97221 0.86689 0.97068 1.21173 1.47381 0.92114 0.94376 0.92306 1.25006 0.95621 0.96297 0.97514 1.69954 1.49964 0.98561 1.34940 0.86643 0.78586 0.77544 0.85530 1.20720 1.21272 1.19957 1.20817 1.11104 0.99374 0.92805 1.20528 0.91711 0.93236 0.96019 0.87304 0.88219 0.90363 0.86245 0.86412 0.76366 0.92176 0.92224 0.95275 0.91433 0.93406 0.93357 0.91448 0.95261 0.96363 0.96388 0.92991 0.85313 0.85032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -3.64 10.70 101.05 1.08 -2.56 16 2 S 1.33 10.96 14.18 -107.50 -1.52 9.43 16 3 O -0.87 -12.94 16.89 -35.23 -0.60 -13.53 16 4 C -0.53 -5.87 5.61 -39.55 -0.22 -6.09 16 5 C 0.00 -0.06 9.43 -39.62 -0.37 -0.43 16 6 C -0.22 -2.94 9.90 -39.38 -0.39 -3.33 16 7 C 0.26 3.54 6.65 -83.79 -0.56 2.98 16 8 N -0.73 -10.12 5.14 -58.63 -0.30 -10.42 16 9 C 0.13 1.99 3.80 -4.04 -0.02 1.98 16 10 C -0.07 -1.28 0.54 -154.51 -0.08 -1.37 16 11 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 12 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 13 C 0.04 0.86 4.04 -27.89 -0.11 0.75 16 14 C -0.51 -13.28 7.65 -34.44 -0.26 -13.55 16 15 H 0.06 1.48 5.68 -52.48 -0.30 1.18 16 16 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 17 N -0.89 -25.72 13.29 55.43 0.74 -24.99 16 18 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 22 C -0.22 -2.69 9.31 -39.38 -0.37 -3.06 16 23 C 0.01 0.05 9.74 -39.61 -0.39 -0.33 16 24 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.10 0.59 8.14 -51.92 -0.42 0.17 16 26 H 0.08 0.74 8.14 -51.92 -0.42 0.31 16 27 H 0.12 1.65 7.45 -52.48 -0.39 1.26 16 28 H 0.12 1.42 8.06 -52.48 -0.42 0.99 16 29 H 0.40 5.28 6.18 -40.82 -0.25 5.02 16 30 H 0.06 0.95 7.96 -51.93 -0.41 0.54 16 31 H 0.06 0.94 7.94 -51.93 -0.41 0.53 16 32 H 0.03 0.43 6.86 -51.93 -0.36 0.07 16 33 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 37 H 0.03 0.43 6.86 -51.93 -0.36 0.07 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 41 H 0.13 1.53 6.73 -52.49 -0.35 1.18 16 42 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 LS Contribution 349.60 15.07 5.27 5.27 Total: -1.00 -33.73 349.60 -9.08 -42.81 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -6.46 Total: 2.94 kcal Atomic # 6 Polarization: -26.16 SS G_CDS: -1.19 Total: -27.35 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: 0.44 Total: -35.41 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: -0.60 Total: -13.53 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: 10.96 SS G_CDS: -1.52 Total: 9.43 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.73 -9.08 -42.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121580476.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.902 kcal (2) G-P(sol) polarization free energy of solvation -33.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds