Wall clock time and date at job start Tue Mar 31 2020 07:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 O 1.42098 * 109.46902 * 2 1 4 4 C 1.76203 * 102.99776 * 250.94678 * 2 1 3 5 5 C 1.38283 * 119.92551 * 89.99888 * 4 2 1 6 6 C 1.38101 * 120.07597 * 179.97438 * 5 4 2 7 7 C 1.38912 * 119.92565 * 0.02562 * 6 5 4 8 8 N 1.39673 * 120.07315 * 179.97438 * 7 6 5 9 9 C 1.46506 * 119.99605 * 180.02562 * 8 7 6 10 10 C 1.53002 * 109.47035 * 180.02562 * 9 8 7 11 11 C 1.53000 * 109.46911 * 300.00027 * 10 9 8 12 12 C 1.53001 * 109.46963 * 59.99511 * 10 9 8 13 13 C 1.52996 * 109.46969 * 179.97438 * 10 9 8 14 14 C 1.50699 * 109.46861 * 179.97438 * 13 10 9 15 15 H 1.08003 * 119.99962 * 359.97438 * 14 13 10 16 16 C 1.37884 * 120.00200 * 180.02562 * 14 13 10 17 17 N 1.31516 * 119.99569 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00031 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47227 * 90.00066 * 18 16 14 20 20 H 1.48500 * 109.46628 * 209.99752 * 18 16 14 21 21 H 1.48493 * 109.47109 * 329.99411 * 18 16 14 22 22 C 1.38914 * 119.84917 * 0.25534 * 7 6 5 23 23 C 1.38106 * 119.92380 * 359.48549 * 22 7 6 24 24 H 1.08995 * 109.46748 * 169.05540 * 1 2 3 25 25 H 1.08999 * 109.46688 * 289.05055 * 1 2 3 26 26 H 1.08998 * 109.46771 * 49.05258 * 1 2 3 27 27 H 1.08009 * 119.96048 * 0.02562 * 5 4 2 28 28 H 1.08005 * 120.03673 * 179.97438 * 6 5 4 29 29 H 0.96999 * 120.00315 * 0.02562 * 8 7 6 30 30 H 1.09004 * 109.47073 * 299.99891 * 9 8 7 31 31 H 1.09000 * 109.47212 * 59.99974 * 9 8 7 32 32 H 1.09002 * 109.47398 * 60.00028 * 11 10 9 33 33 H 1.09001 * 109.47194 * 180.02562 * 11 10 9 34 34 H 1.09000 * 109.46968 * 300.00009 * 11 10 9 35 35 H 1.09004 * 109.47086 * 60.00354 * 12 10 9 36 36 H 1.09001 * 109.46652 * 180.02562 * 12 10 9 37 37 H 1.08992 * 109.47514 * 300.00067 * 12 10 9 38 38 H 1.08992 * 109.47534 * 299.99582 * 13 10 9 39 39 H 1.08996 * 109.47134 * 60.00388 * 13 10 9 40 40 H 0.97002 * 119.99797 * 180.02562 * 17 16 14 41 41 H 1.07998 * 120.03713 * 179.72784 * 22 7 6 42 42 H 1.07994 * 119.96460 * 180.25714 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2877 1.3397 0.0000 4 6 2.2104 -0.5605 -1.6228 5 6 2.3655 0.3529 -2.6494 6 6 2.6766 -0.0829 -3.9224 7 6 2.8332 -1.4406 -4.1711 8 7 3.1474 -1.8848 -5.4575 9 6 3.3116 -3.3171 -5.7181 10 6 3.6507 -3.5313 -7.1946 11 6 2.5173 -2.9815 -8.0631 12 6 4.9515 -2.7992 -7.5305 13 6 3.8228 -5.0270 -7.4666 14 6 4.1561 -5.2379 -8.9210 15 1 4.2367 -4.3900 -9.5851 16 6 4.3572 -6.5136 -9.4043 17 7 4.2586 -7.5461 -8.5957 18 14 4.7711 -6.7750 -11.2070 19 1 6.2449 -6.7422 -11.3863 20 1 4.2479 -8.0926 -11.6489 21 1 4.1496 -5.6980 -12.0187 22 6 2.6709 -2.3558 -3.1388 23 6 2.3651 -1.9128 -1.8670 24 1 -0.3633 -1.0090 -0.1951 25 1 -0.3633 0.3354 0.9714 26 1 -0.3633 0.6735 -0.7762 27 1 2.2440 1.4084 -2.4552 28 1 2.7972 0.6310 -4.7238 29 1 3.2568 -1.2450 -6.1784 30 1 4.1194 -3.7086 -5.0997 31 1 2.3850 -3.8386 -5.4784 32 1 2.3951 -1.9159 -7.8692 33 1 2.7586 -3.1345 -9.1150 34 1 1.5905 -3.5030 -7.8237 35 1 5.7590 -3.1908 -6.9118 36 1 5.1928 -2.9514 -8.5825 37 1 4.8293 -1.7337 -7.3367 38 1 4.6304 -5.4182 -6.8480 39 1 2.8963 -5.5488 -7.2272 40 1 4.4004 -8.4435 -8.9356 41 1 2.7876 -3.4124 -3.3298 42 1 2.2429 -2.6235 -1.0631 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121580476.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:09 Heat of formation + Delta-G solvation = -51.628935 kcal Electronic energy + Delta-G solvation = -21026.990214 eV Core-core repulsion = 17903.892274 eV Total energy + Delta-G solvation = -3123.097940 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.51463 -38.86780 -36.74452 -35.70050 -34.20878 -31.87931 -30.45415 -29.50097 -28.81322 -28.01333 -27.25716 -24.89300 -23.65611 -22.54327 -19.78839 -18.95173 -18.37617 -18.26690 -17.14185 -16.68522 -16.41609 -15.85419 -15.64530 -15.43046 -15.23387 -14.68477 -14.57469 -14.45497 -14.26855 -14.18042 -13.95361 -13.73929 -13.54001 -13.24121 -12.90382 -12.74883 -12.66530 -12.62327 -12.36617 -12.26543 -12.02345 -11.87168 -11.63262 -11.23018 -11.03354 -10.99589 -10.86274 -10.51428 -9.88614 -9.34472 -8.43464 -8.15495 -6.21941 0.25920 0.53017 1.17857 1.40576 1.41540 1.50984 1.96684 2.39668 2.50072 2.82666 3.14832 3.19284 3.89427 3.97716 4.08078 4.09560 4.21251 4.39233 4.48232 4.55060 4.63174 4.64829 4.72350 4.73625 4.82330 4.92945 5.07776 5.08364 5.11786 5.21537 5.23635 5.40216 5.41853 5.46791 5.47125 5.49101 5.54477 5.78995 5.88788 5.92948 6.28331 6.38424 6.75437 6.92591 7.45391 8.96621 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.043134 B = 0.002568 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.988925 B =10902.197862 C =11192.136648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.499 4.499 2 S 1.400 4.600 3 O -0.935 6.935 4 C -0.535 4.535 5 C -0.028 4.028 6 C -0.229 4.229 7 C 0.242 3.758 8 N -0.730 5.730 9 C 0.144 3.856 10 C -0.064 4.064 11 C -0.121 4.121 12 C -0.121 4.121 13 C 0.043 3.957 14 C -0.516 4.516 15 H 0.065 0.935 16 C 0.000 4.000 17 N -0.934 5.934 18 Si 0.952 3.048 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.265 1.265 22 C -0.231 4.231 23 C 0.016 3.984 24 H 0.136 0.864 25 H 0.118 0.882 26 H 0.056 0.944 27 H 0.106 0.894 28 H 0.123 0.877 29 H 0.403 0.597 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.050 0.950 34 H 0.040 0.960 35 H 0.040 0.960 36 H 0.050 0.950 37 H 0.058 0.942 38 H -0.008 1.008 39 H -0.008 1.008 40 H 0.260 0.740 41 H 0.132 0.868 42 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.274 10.813 16.853 20.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.657 4.657 2 S 1.599 4.401 3 O -0.931 6.931 4 C -0.635 4.635 5 C -0.048 4.048 6 C -0.253 4.253 7 C 0.135 3.865 8 N -0.357 5.357 9 C 0.020 3.980 10 C -0.065 4.065 11 C -0.178 4.178 12 C -0.179 4.179 13 C 0.005 3.995 14 C -0.554 4.554 15 H 0.083 0.917 16 C -0.198 4.198 17 N -0.575 5.575 18 Si 0.778 3.222 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.189 1.189 22 C -0.255 4.255 23 C -0.004 4.004 24 H 0.155 0.845 25 H 0.136 0.864 26 H 0.076 0.924 27 H 0.124 0.876 28 H 0.141 0.859 29 H 0.240 0.760 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.011 0.989 39 H 0.011 0.989 40 H 0.069 0.931 41 H 0.150 0.850 42 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -5.623 10.697 17.517 21.281 hybrid contribution -0.494 1.043 -3.357 3.550 sum -6.117 11.740 14.160 19.385 Atomic orbital electron populations 1.27794 1.21751 1.09036 1.07078 1.68323 0.85261 0.96132 0.90352 1.92944 1.75715 1.40968 1.83519 1.27416 1.19817 0.99912 1.16306 1.20803 0.92853 0.98694 0.92473 1.20711 1.12354 0.93939 0.98263 1.18273 0.89514 0.92968 0.85745 1.45027 1.75589 1.07470 1.07569 1.21335 1.00066 0.80677 0.95969 1.20675 0.95978 0.97037 0.92779 1.21672 0.97012 0.99229 0.99907 1.21677 0.96147 0.98546 1.01505 1.18945 0.94779 0.90252 0.95523 1.21582 1.45987 0.92204 0.95654 0.91680 1.25848 0.95915 0.96312 1.01700 1.70084 1.51610 0.98936 1.36874 0.85633 0.78414 0.77473 0.80656 1.20246 1.21311 1.18898 1.21110 1.11279 0.99470 0.93636 1.21062 0.89325 0.93547 0.96464 0.84503 0.86353 0.92449 0.87595 0.85924 0.76020 0.92591 0.92526 0.92259 0.93140 0.94042 0.94064 0.93088 0.92274 0.98950 0.98926 0.93089 0.85001 0.80022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -5.73 10.70 113.37 1.21 -4.52 16 2 S 1.40 19.94 14.18 -56.49 -0.80 19.14 16 3 O -0.94 -27.23 16.89 -148.98 -2.52 -29.75 16 4 C -0.54 -10.77 5.61 22.29 0.13 -10.65 16 5 C -0.03 -0.74 9.43 22.25 0.21 -0.53 16 6 C -0.23 -5.96 9.90 22.40 0.22 -5.74 16 7 C 0.24 6.32 6.65 38.22 0.25 6.57 16 8 N -0.73 -19.35 5.14 -339.39 -1.74 -21.10 16 9 C 0.14 4.41 3.80 86.38 0.33 4.74 16 10 C -0.06 -2.31 0.54 -52.18 -0.03 -2.34 16 11 C -0.12 -4.08 8.05 71.98 0.58 -3.50 16 12 C -0.12 -4.12 8.05 71.98 0.58 -3.54 16 13 C 0.04 2.05 4.04 29.85 0.12 2.17 16 14 C -0.52 -27.09 7.65 25.60 0.20 -26.89 16 15 H 0.07 3.28 5.68 -2.91 -0.02 3.26 16 16 C 0.00 -0.03 5.46 84.66 0.46 0.44 16 17 N -0.93 -54.88 13.29 21.45 0.28 -54.60 16 18 Si 0.95 43.01 29.54 68.60 2.03 45.03 16 19 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 20 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 21 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 22 C -0.23 -5.28 9.31 22.40 0.21 -5.07 16 23 C 0.02 0.26 9.74 22.25 0.22 0.48 16 24 H 0.14 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.12 0.99 8.14 -2.39 -0.02 0.98 16 26 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.11 3.00 7.45 -2.91 -0.02 2.97 16 28 H 0.12 2.92 8.06 -2.91 -0.02 2.90 16 29 H 0.40 9.94 6.18 -92.71 -0.57 9.37 16 30 H 0.06 1.76 7.96 -2.38 -0.02 1.74 16 31 H 0.06 1.77 7.94 -2.39 -0.02 1.75 16 32 H 0.06 1.63 6.86 -2.39 -0.02 1.62 16 33 H 0.05 1.86 6.62 -2.39 -0.02 1.85 16 34 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 36 H 0.05 1.88 6.62 -2.39 -0.02 1.87 16 37 H 0.06 1.64 6.86 -2.39 -0.02 1.62 16 38 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 39 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 40 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 41 H 0.13 2.91 6.73 -2.91 -0.02 2.89 16 42 H 0.18 1.12 8.06 -2.91 -0.02 1.10 16 Total: -1.00 -75.02 349.60 2.37 -72.64 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: 0.43 Total: 17.01 kcal Atomic # 6 Polarization: -53.07 SS G_CDS: 4.69 Total: -48.38 kcal Atomic # 7 Polarization: -74.23 SS G_CDS: -1.46 Total: -75.69 kcal Atomic # 8 Polarization: -27.23 SS G_CDS: -2.52 Total: -29.75 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Atomic # 16 Polarization: 19.94 SS G_CDS: -0.80 Total: 19.14 kcal Total: -75.02 2.37 -72.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121580476.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.014 kcal (2) G-P(sol) polarization free energy of solvation -75.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds