Wall clock time and date at job start Tue Mar 31 2020 07:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42105 * 109.46988 * 2 1 4 4 C 1.76197 * 103.00066 * 250.94469 * 2 1 3 5 5 C 1.38312 * 119.96351 * 89.99952 * 4 2 1 6 6 C 1.38260 * 120.15342 * 179.97438 * 5 4 2 7 7 C 1.38129 * 120.07238 * 0.02562 * 6 5 4 8 8 C 1.38886 * 119.92287 * 0.02562 * 7 6 5 9 9 N 1.39680 * 120.07021 * 179.97438 * 8 7 6 10 10 C 1.46494 * 120.00220 * 359.97438 * 9 8 7 11 11 C 1.52996 * 109.47061 * 180.02562 * 10 9 8 12 12 C 1.53000 * 109.47503 * 300.00104 * 11 10 9 13 13 C 1.52999 * 109.47350 * 60.00401 * 11 10 9 14 14 C 1.53009 * 109.47091 * 180.02562 * 11 10 9 15 15 C 1.50698 * 109.47032 * 180.02562 * 14 11 10 16 16 H 1.08002 * 120.00493 * 0.02562 * 15 14 11 17 17 C 1.37881 * 119.99745 * 180.02562 * 15 14 11 18 18 N 1.31521 * 119.99612 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 120.00281 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.47126 * 89.99797 * 19 17 15 21 21 H 1.48490 * 109.47051 * 210.00004 * 19 17 15 22 22 H 1.48499 * 109.46692 * 330.00375 * 19 17 15 23 23 C 1.38077 * 119.96414 * 269.72960 * 4 2 1 24 24 H 1.09000 * 109.46905 * 49.05257 * 1 2 3 25 25 H 1.08994 * 109.47180 * 169.05162 * 1 2 3 26 26 H 1.09001 * 109.47115 * 289.05867 * 1 2 3 27 27 H 1.08007 * 119.92125 * 0.02562 * 5 4 2 28 28 H 1.07994 * 119.96575 * 180.02562 * 6 5 4 29 29 H 1.08000 * 120.03733 * 179.97438 * 7 6 5 30 30 H 0.97002 * 119.99572 * 179.97438 * 9 8 7 31 31 H 1.09000 * 109.47406 * 300.00317 * 10 9 8 32 32 H 1.09004 * 109.47212 * 60.00339 * 10 9 8 33 33 H 1.09001 * 109.46964 * 59.99869 * 12 11 10 34 34 H 1.08995 * 109.47659 * 180.02562 * 12 11 10 35 35 H 1.09004 * 109.47078 * 299.99851 * 12 11 10 36 36 H 1.08997 * 109.47280 * 59.99424 * 13 11 10 37 37 H 1.09003 * 109.47521 * 180.02562 * 13 11 10 38 38 H 1.09001 * 109.46738 * 299.99898 * 13 11 10 39 39 H 1.08997 * 109.46889 * 300.00178 * 14 11 10 40 40 H 1.08999 * 109.46775 * 60.00394 * 14 11 10 41 41 H 0.97003 * 119.99730 * 179.97438 * 18 17 15 42 42 H 1.08000 * 120.04077 * 359.97438 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2877 1.3398 0.0000 4 6 2.2104 -0.5605 -1.6227 5 6 2.3658 0.3523 -2.6502 6 6 2.6774 -0.0831 -3.9249 7 6 2.8340 -1.4322 -4.1765 8 6 2.6776 -2.3516 -3.1473 9 7 2.8347 -3.7167 -3.3984 10 6 3.1643 -4.1800 -4.7485 11 6 3.2784 -5.7057 -4.7504 12 6 4.3806 -6.1360 -3.7804 13 6 1.9462 -6.3173 -4.3125 14 6 3.6232 -6.1895 -6.1605 15 6 3.7350 -7.6923 -6.1625 16 1 3.5756 -8.2470 -5.2496 17 6 4.0408 -8.3593 -7.3299 18 7 4.1388 -9.6708 -7.3315 19 14 4.3158 -7.4001 -8.9090 20 1 5.7526 -7.0443 -9.0282 21 1 3.9142 -8.2334 -10.0706 22 1 3.4993 -6.1600 -8.8834 23 6 2.3711 -1.9101 -1.8661 24 1 -0.3633 0.6735 -0.7762 25 1 -0.3633 -1.0089 -0.1952 26 1 -0.3633 0.3356 0.9713 27 1 2.2443 1.4078 -2.4560 28 1 2.7984 0.6323 -4.7247 29 1 3.0769 -1.7718 -5.1725 30 1 2.7256 -4.3578 -2.6787 31 1 2.3789 -3.8738 -5.4395 32 1 4.1132 -3.7439 -5.0608 33 1 4.1353 -5.7913 -2.7758 34 1 4.4622 -7.2229 -3.7821 35 1 5.3297 -5.7003 -4.0925 36 1 1.1610 -6.0108 -5.0035 37 1 2.0276 -7.4043 -4.3134 38 1 1.7009 -5.9726 -3.3079 39 1 2.8384 -5.8829 -6.8518 40 1 4.5725 -5.7538 -6.4720 41 1 4.3536 -10.1401 -8.1529 42 1 2.2543 -2.6221 -1.0625 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121771811.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:16 Heat of formation + Delta-G solvation = -23.800565 kcal Electronic energy + Delta-G solvation = -21170.825345 eV Core-core repulsion = 18048.934134 eV Total energy + Delta-G solvation = -3121.891211 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.52716 -37.60894 -35.89298 -34.36676 -32.29727 -31.14750 -29.33995 -28.96820 -27.62888 -26.59812 -25.94500 -23.10661 -22.53999 -21.45203 -18.36165 -18.11407 -17.08787 -16.90249 -16.17169 -15.52428 -15.10832 -15.03232 -14.54328 -14.40090 -14.00563 -13.78462 -13.55619 -13.36838 -13.25415 -12.98512 -12.78089 -12.39599 -12.32119 -12.16415 -11.61509 -11.52078 -11.35863 -11.19813 -11.04820 -10.68517 -10.53845 -10.36612 -10.19848 -9.88811 -9.79390 -9.57452 -9.21860 -9.05300 -8.58916 -8.56814 -7.34467 -6.09288 -4.06798 0.87942 1.53984 1.76696 2.53198 3.25987 3.34503 3.36436 3.54348 3.66217 3.86599 4.40010 4.81873 4.92016 5.01561 5.10810 5.22809 5.23527 5.26411 5.43565 5.45326 5.55790 5.63946 5.70500 5.80826 5.99132 6.03888 6.09547 6.19737 6.26290 6.28834 6.47372 6.49759 6.54868 6.72821 6.84621 6.96493 6.99878 7.12480 7.29591 7.40445 7.73009 7.84419 8.47715 8.94919 9.53126 11.03517 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.034043 B = 0.002883 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.283291 B = 9709.480065 C =10168.240320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.497 4.497 2 S 1.328 4.672 3 O -0.862 6.862 4 C -0.411 4.411 5 C -0.125 4.125 6 C -0.086 4.086 7 C -0.166 4.166 8 C 0.211 3.789 9 N -0.737 5.737 10 C 0.128 3.872 11 C -0.061 4.061 12 C -0.128 4.128 13 C -0.127 4.127 14 C -0.002 4.002 15 C -0.512 4.512 16 H 0.078 0.922 17 C 0.067 3.933 18 N -0.903 5.903 19 Si 0.875 3.125 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.266 1.266 23 C -0.129 4.129 24 H 0.080 0.920 25 H 0.111 0.889 26 H 0.103 0.897 27 H 0.118 0.882 28 H 0.119 0.881 29 H 0.125 0.875 30 H 0.401 0.599 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.033 0.967 34 H 0.071 0.929 35 H 0.046 0.954 36 H 0.045 0.955 37 H 0.071 0.929 38 H 0.032 0.968 39 H 0.017 0.983 40 H 0.012 0.988 41 H 0.263 0.737 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.665 15.173 14.191 21.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.653 4.653 2 S 1.526 4.474 3 O -0.857 6.857 4 C -0.509 4.509 5 C -0.146 4.146 6 C -0.105 4.105 7 C -0.189 4.189 8 C 0.104 3.896 9 N -0.365 5.365 10 C 0.005 3.995 11 C -0.061 4.061 12 C -0.185 4.185 13 C -0.185 4.185 14 C -0.040 4.040 15 C -0.550 4.550 16 H 0.096 0.904 17 C -0.134 4.134 18 N -0.542 5.542 19 Si 0.703 3.297 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.191 1.191 23 C -0.153 4.153 24 H 0.099 0.901 25 H 0.130 0.870 26 H 0.122 0.878 27 H 0.136 0.864 28 H 0.137 0.863 29 H 0.142 0.858 30 H 0.237 0.763 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.052 0.948 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.090 0.910 38 H 0.051 0.949 39 H 0.035 0.965 40 H 0.031 0.969 41 H 0.072 0.928 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.979 15.220 14.599 21.669 hybrid contribution -0.713 1.372 -2.671 3.086 sum -5.692 16.592 11.928 21.212 Atomic orbital electron populations 1.27748 1.22584 1.07980 1.07032 1.69439 0.85914 0.99332 0.92718 1.93087 1.73119 1.37356 1.82172 1.27210 1.09504 0.98774 1.15385 1.20746 1.02254 0.98885 0.92718 1.20961 0.97822 0.95126 0.96641 1.20886 1.06289 0.92839 0.98874 1.17973 0.93358 0.84837 0.93383 1.44977 1.76867 1.02921 1.11741 1.21626 0.99287 0.96005 0.82631 1.20644 0.95964 0.90521 0.99008 1.21759 0.97552 1.02987 0.96208 1.21752 0.95916 1.02520 0.98271 1.19594 0.95954 0.97732 0.90679 1.21074 1.47540 0.89397 0.96951 0.90383 1.25008 0.94923 0.94695 0.98821 1.69903 1.49334 1.07040 1.27927 0.86852 0.78864 0.80420 0.83563 1.20374 1.21475 1.19117 1.20190 1.05714 0.93959 0.95471 0.90065 0.87047 0.87847 0.86397 0.86266 0.85755 0.76270 0.92675 0.92630 0.94840 0.90973 0.93517 0.93550 0.90970 0.94868 0.96512 0.96930 0.92752 0.85082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -3.36 10.70 101.05 1.08 -2.28 16 2 S 1.33 10.45 14.19 -107.50 -1.52 8.92 16 3 O -0.86 -12.38 16.89 -35.23 -0.60 -12.98 16 4 C -0.41 -4.43 5.61 -39.61 -0.22 -4.66 16 5 C -0.12 -1.60 9.44 -39.55 -0.37 -1.97 16 6 C -0.09 -1.06 10.04 -39.61 -0.40 -1.46 16 7 C -0.17 -2.13 9.31 -39.38 -0.37 -2.49 16 8 C 0.21 2.59 6.65 -83.78 -0.56 2.04 16 9 N -0.74 -9.11 5.14 -58.64 -0.30 -9.41 16 10 C 0.13 1.88 3.80 -4.05 -0.02 1.86 16 11 C -0.06 -1.04 0.54 -154.51 -0.08 -1.13 16 12 C -0.13 -2.11 8.05 37.16 0.30 -1.81 16 13 C -0.13 -2.10 8.05 37.16 0.30 -1.80 16 14 C 0.00 -0.04 3.11 -27.88 -0.09 -0.13 16 15 C -0.51 -13.33 8.20 -34.44 -0.28 -13.61 16 16 H 0.08 2.16 5.92 -52.49 -0.31 1.85 16 17 C 0.07 1.84 5.47 -17.82 -0.10 1.75 16 18 N -0.90 -26.76 13.96 55.43 0.77 -25.98 16 19 Si 0.88 20.95 27.47 -169.99 -4.67 16.28 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.27 -6.12 6.54 56.52 0.37 -5.75 16 23 C -0.13 -1.31 9.60 -39.38 -0.38 -1.69 16 24 H 0.08 0.71 8.14 -51.92 -0.42 0.29 16 25 H 0.11 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.10 0.56 8.14 -51.92 -0.42 0.13 16 27 H 0.12 1.59 7.45 -52.48 -0.39 1.19 16 28 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 29 H 0.12 1.55 6.73 -52.49 -0.35 1.20 16 30 H 0.40 4.44 6.18 -40.82 -0.25 4.19 16 31 H 0.06 0.82 7.95 -51.93 -0.41 0.41 16 32 H 0.06 0.83 7.95 -51.93 -0.41 0.41 16 33 H 0.03 0.45 6.86 -51.93 -0.36 0.09 16 34 H 0.07 1.36 6.62 -51.93 -0.34 1.02 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 1.36 6.62 -51.93 -0.34 1.02 16 38 H 0.03 0.44 6.86 -51.93 -0.36 0.09 16 39 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 40 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 41 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 42 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 346.01 15.07 5.21 5.21 Total: -1.00 -34.23 346.01 -8.71 -42.94 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -6.43 Total: 2.39 kcal Atomic # 6 Polarization: -26.19 SS G_CDS: -1.18 Total: -27.37 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: 0.47 Total: -35.39 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: -0.60 Total: -12.98 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.67 Total: 16.28 kcal Atomic # 16 Polarization: 10.45 SS G_CDS: -1.52 Total: 8.92 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.23 -8.71 -42.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121771811.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.142 kcal (2) G-P(sol) polarization free energy of solvation -34.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds