Wall clock time and date at job start Tue Mar 31 2020 07:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42105 * 109.46988 * 2 1 4 4 C 1.76197 * 103.00066 * 250.94469 * 2 1 3 5 5 C 1.38312 * 119.96351 * 89.99952 * 4 2 1 6 6 C 1.38260 * 120.15342 * 179.97438 * 5 4 2 7 7 C 1.38129 * 120.07238 * 0.02562 * 6 5 4 8 8 C 1.38886 * 119.92287 * 0.02562 * 7 6 5 9 9 N 1.39680 * 120.07021 * 179.97438 * 8 7 6 10 10 C 1.46494 * 120.00220 * 359.97438 * 9 8 7 11 11 C 1.52996 * 109.47061 * 180.02562 * 10 9 8 12 12 C 1.53000 * 109.47503 * 300.00104 * 11 10 9 13 13 C 1.52999 * 109.47350 * 60.00401 * 11 10 9 14 14 C 1.53009 * 109.47091 * 180.02562 * 11 10 9 15 15 C 1.50698 * 109.47032 * 180.02562 * 14 11 10 16 16 H 1.08002 * 120.00493 * 0.02562 * 15 14 11 17 17 C 1.37881 * 119.99745 * 180.02562 * 15 14 11 18 18 N 1.31521 * 119.99612 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 120.00281 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.47126 * 89.99797 * 19 17 15 21 21 H 1.48490 * 109.47051 * 210.00004 * 19 17 15 22 22 H 1.48499 * 109.46692 * 330.00375 * 19 17 15 23 23 C 1.38077 * 119.96414 * 269.72960 * 4 2 1 24 24 H 1.09000 * 109.46905 * 49.05257 * 1 2 3 25 25 H 1.08994 * 109.47180 * 169.05162 * 1 2 3 26 26 H 1.09001 * 109.47115 * 289.05867 * 1 2 3 27 27 H 1.08007 * 119.92125 * 0.02562 * 5 4 2 28 28 H 1.07994 * 119.96575 * 180.02562 * 6 5 4 29 29 H 1.08000 * 120.03733 * 179.97438 * 7 6 5 30 30 H 0.97002 * 119.99572 * 179.97438 * 9 8 7 31 31 H 1.09000 * 109.47406 * 300.00317 * 10 9 8 32 32 H 1.09004 * 109.47212 * 60.00339 * 10 9 8 33 33 H 1.09001 * 109.46964 * 59.99869 * 12 11 10 34 34 H 1.08995 * 109.47659 * 180.02562 * 12 11 10 35 35 H 1.09004 * 109.47078 * 299.99851 * 12 11 10 36 36 H 1.08997 * 109.47280 * 59.99424 * 13 11 10 37 37 H 1.09003 * 109.47521 * 180.02562 * 13 11 10 38 38 H 1.09001 * 109.46738 * 299.99898 * 13 11 10 39 39 H 1.08997 * 109.46889 * 300.00178 * 14 11 10 40 40 H 1.08999 * 109.46775 * 60.00394 * 14 11 10 41 41 H 0.97003 * 119.99730 * 179.97438 * 18 17 15 42 42 H 1.08000 * 120.04077 * 359.97438 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2877 1.3398 0.0000 4 6 2.2104 -0.5605 -1.6227 5 6 2.3658 0.3523 -2.6502 6 6 2.6774 -0.0831 -3.9249 7 6 2.8340 -1.4322 -4.1765 8 6 2.6776 -2.3516 -3.1473 9 7 2.8347 -3.7167 -3.3984 10 6 3.1643 -4.1800 -4.7485 11 6 3.2784 -5.7057 -4.7504 12 6 4.3806 -6.1360 -3.7804 13 6 1.9462 -6.3173 -4.3125 14 6 3.6232 -6.1895 -6.1605 15 6 3.7350 -7.6923 -6.1625 16 1 3.5756 -8.2470 -5.2496 17 6 4.0408 -8.3593 -7.3299 18 7 4.1388 -9.6708 -7.3315 19 14 4.3158 -7.4001 -8.9090 20 1 5.7526 -7.0443 -9.0282 21 1 3.9142 -8.2334 -10.0706 22 1 3.4993 -6.1600 -8.8834 23 6 2.3711 -1.9101 -1.8661 24 1 -0.3633 0.6735 -0.7762 25 1 -0.3633 -1.0089 -0.1952 26 1 -0.3633 0.3356 0.9713 27 1 2.2443 1.4078 -2.4560 28 1 2.7984 0.6323 -4.7247 29 1 3.0769 -1.7718 -5.1725 30 1 2.7256 -4.3578 -2.6787 31 1 2.3789 -3.8738 -5.4395 32 1 4.1132 -3.7439 -5.0608 33 1 4.1353 -5.7913 -2.7758 34 1 4.4622 -7.2229 -3.7821 35 1 5.3297 -5.7003 -4.0925 36 1 1.1610 -6.0108 -5.0035 37 1 2.0276 -7.4043 -4.3134 38 1 1.7009 -5.9726 -3.3079 39 1 2.8384 -5.8829 -6.8518 40 1 4.5725 -5.7538 -6.4720 41 1 4.3536 -10.1401 -8.1529 42 1 2.2543 -2.6221 -1.0625 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121771811.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:15 Heat of formation + Delta-G solvation = -46.737622 kcal Electronic energy + Delta-G solvation = -21171.819971 eV Core-core repulsion = 18048.934134 eV Total energy + Delta-G solvation = -3122.885837 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.49123 -38.87870 -36.83257 -35.62152 -34.20070 -32.01423 -30.55355 -29.58161 -29.19253 -27.94672 -27.14447 -24.51459 -23.65742 -22.56012 -19.67702 -19.04407 -18.88615 -17.87875 -17.19613 -16.53689 -16.24310 -15.94992 -15.85260 -15.67981 -15.11379 -15.05481 -14.53765 -14.48219 -14.34920 -14.16840 -14.11418 -13.66860 -13.45785 -13.01098 -12.92198 -12.83041 -12.61015 -12.50087 -12.37401 -12.26905 -12.07920 -11.74544 -11.54223 -11.28886 -11.08433 -10.98412 -10.87478 -10.70034 -10.09412 -9.31052 -8.29390 -8.21879 -6.22051 0.06290 0.62692 1.04553 1.36166 1.38689 1.48102 1.85870 2.39234 2.57172 2.80924 3.08481 3.13831 3.95197 4.01148 4.11111 4.19754 4.24292 4.31068 4.37527 4.53033 4.61312 4.66439 4.71020 4.77274 4.78538 5.00184 5.00461 5.06462 5.13004 5.20770 5.28851 5.34466 5.40705 5.43027 5.43654 5.55464 5.57705 5.72757 5.77699 5.83595 6.36469 6.45108 6.85671 6.95658 7.40757 8.93966 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.034043 B = 0.002883 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.283291 B = 9709.480065 C =10168.240320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.495 4.495 2 S 1.396 4.604 3 O -0.928 6.928 4 C -0.418 4.418 5 C -0.149 4.149 6 C -0.095 4.095 7 C -0.183 4.183 8 C 0.200 3.800 9 N -0.730 5.730 10 C 0.142 3.858 11 C -0.057 4.057 12 C -0.123 4.123 13 C -0.122 4.122 14 C -0.003 4.003 15 C -0.502 4.502 16 H 0.050 0.950 17 C 0.003 3.997 18 N -0.953 5.953 19 Si 0.936 3.064 20 H -0.272 1.272 21 H -0.291 1.291 22 H -0.248 1.248 23 C -0.116 4.116 24 H 0.060 0.940 25 H 0.138 0.862 26 H 0.122 0.878 27 H 0.102 0.898 28 H 0.128 0.872 29 H 0.123 0.877 30 H 0.410 0.590 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.039 0.961 35 H 0.043 0.957 36 H 0.043 0.957 37 H 0.039 0.961 38 H 0.069 0.931 39 H 0.015 0.985 40 H 0.014 0.986 41 H 0.262 0.738 42 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.550 16.428 15.668 23.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.653 4.653 2 S 1.595 4.405 3 O -0.924 6.924 4 C -0.515 4.515 5 C -0.171 4.171 6 C -0.115 4.115 7 C -0.206 4.206 8 C 0.094 3.906 9 N -0.361 5.361 10 C 0.017 3.983 11 C -0.058 4.058 12 C -0.180 4.180 13 C -0.179 4.179 14 C -0.041 4.041 15 C -0.540 4.540 16 H 0.068 0.932 17 C -0.193 4.193 18 N -0.595 5.595 19 Si 0.761 3.239 20 H -0.198 1.198 21 H -0.217 1.217 22 H -0.172 1.172 23 C -0.140 4.140 24 H 0.080 0.920 25 H 0.157 0.843 26 H 0.140 0.860 27 H 0.120 0.880 28 H 0.146 0.854 29 H 0.141 0.859 30 H 0.248 0.752 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.088 0.912 39 H 0.034 0.966 40 H 0.032 0.968 41 H 0.071 0.929 42 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -5.852 16.502 16.084 23.775 hybrid contribution -0.526 0.967 -3.002 3.197 sum -6.377 17.469 13.083 22.737 Atomic orbital electron populations 1.27736 1.20750 1.09339 1.07507 1.68646 0.85852 0.96278 0.89746 1.92967 1.75731 1.40797 1.82869 1.27580 1.08855 0.98973 1.16085 1.20824 1.03774 0.98711 0.93763 1.21089 0.97968 0.95468 0.96938 1.20984 1.07208 0.93133 0.99297 1.18141 0.93820 0.84468 0.94177 1.44716 1.77258 1.03184 1.10898 1.21281 0.99364 0.93550 0.84057 1.20515 0.96442 0.92527 0.96276 1.21684 0.97308 1.00838 0.98154 1.21676 0.95454 1.00380 1.00411 1.19574 0.95926 0.94673 0.93955 1.21408 1.45248 0.91762 0.95606 0.93222 1.25873 0.95415 0.95481 1.02531 1.70054 1.51797 1.08902 1.28766 0.85871 0.79182 0.79559 0.79293 1.19769 1.21747 1.17178 1.20641 1.03244 0.94288 0.95791 0.92040 0.84317 0.85963 0.87989 0.85418 0.85919 0.75219 0.92782 0.92783 0.91212 0.94164 0.93824 0.93817 0.94167 0.91207 0.96632 0.96811 0.92928 0.80614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -5.06 10.70 113.37 1.21 -3.85 16 2 S 1.40 18.49 14.19 -56.49 -0.80 17.69 16 3 O -0.93 -25.97 16.89 -148.98 -2.52 -28.49 16 4 C -0.42 -8.02 5.61 22.25 0.12 -7.90 16 5 C -0.15 -3.73 9.44 22.29 0.21 -3.52 16 6 C -0.09 -2.29 10.04 22.25 0.22 -2.06 16 7 C -0.18 -4.39 9.31 22.40 0.21 -4.18 16 8 C 0.20 4.28 6.65 38.21 0.25 4.53 16 9 N -0.73 -15.36 5.14 -339.43 -1.74 -17.10 16 10 C 0.14 3.78 3.80 86.38 0.33 4.11 16 11 C -0.06 -1.86 0.54 -52.18 -0.03 -1.89 16 12 C -0.12 -3.84 8.05 71.98 0.58 -3.26 16 13 C -0.12 -3.80 8.05 71.98 0.58 -3.22 16 14 C 0.00 -0.14 3.11 29.85 0.09 -0.05 16 15 C -0.50 -26.57 8.20 25.60 0.21 -26.36 16 16 H 0.05 2.86 5.92 -2.91 -0.02 2.84 16 17 C 0.00 0.17 5.47 84.65 0.46 0.63 16 18 N -0.95 -58.17 13.96 21.45 0.30 -57.87 16 19 Si 0.94 43.20 27.47 68.60 1.88 45.09 16 20 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 21 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 22 H -0.25 -10.60 6.54 99.48 0.65 -9.95 16 23 C -0.12 -1.89 9.60 22.40 0.22 -1.68 16 24 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.14 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.10 2.82 7.45 -2.91 -0.02 2.79 16 28 H 0.13 2.67 8.06 -2.91 -0.02 2.65 16 29 H 0.12 2.90 6.73 -2.91 -0.02 2.88 16 30 H 0.41 7.10 6.18 -92.71 -0.57 6.53 16 31 H 0.05 1.47 7.95 -2.39 -0.02 1.45 16 32 H 0.05 1.47 7.95 -2.38 -0.02 1.45 16 33 H 0.07 1.66 6.86 -2.39 -0.02 1.64 16 34 H 0.04 1.51 6.62 -2.39 -0.02 1.49 16 35 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 36 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.04 1.50 6.62 -2.39 -0.02 1.49 16 38 H 0.07 1.64 6.86 -2.39 -0.02 1.62 16 39 H 0.02 0.66 7.20 -2.39 -0.02 0.65 16 40 H 0.01 0.58 7.57 -2.39 -0.02 0.56 16 41 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 42 H 0.18 1.19 8.06 -2.91 -0.02 1.17 16 Total: -1.00 -77.08 346.01 2.18 -74.90 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 0.38 Total: 14.48 kcal Atomic # 6 Polarization: -53.37 SS G_CDS: 4.67 Total: -48.70 kcal Atomic # 7 Polarization: -73.52 SS G_CDS: -1.44 Total: -74.97 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -2.52 Total: -28.49 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 1.88 Total: 45.09 kcal Atomic # 16 Polarization: 18.49 SS G_CDS: -0.80 Total: 17.69 kcal Total: -77.08 2.18 -74.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121771811.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.163 kcal (2) G-P(sol) polarization free energy of solvation -77.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds