Wall clock time and date at job start Tue Mar 31 2020 07:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42103 * 109.47032 * 2 1 4 4 C 1.76199 * 102.99781 * 109.05714 * 2 1 3 5 5 C 1.38309 * 119.96301 * 90.00033 * 4 2 1 6 6 C 1.38264 * 120.15307 * 180.02562 * 5 4 2 7 7 C 1.38126 * 120.07351 * 0.25970 * 6 5 4 8 8 C 1.38898 * 119.91986 * 359.44369 * 7 6 5 9 9 N 1.39675 * 120.07050 * 180.27821 * 8 7 6 10 10 C 1.46500 * 120.00232 * 0.29683 * 9 8 7 11 11 C 1.52998 * 109.47206 * 179.97438 * 10 9 8 12 12 C 1.52999 * 109.47221 * 300.00092 * 11 10 9 13 13 C 1.52999 * 109.47007 * 59.99944 * 11 10 9 14 14 C 1.53002 * 109.47036 * 180.02562 * 11 10 9 15 15 C 1.50704 * 109.47045 * 180.02562 * 14 11 10 16 16 H 1.07997 * 120.00025 * 359.97438 * 15 14 11 17 17 C 1.37874 * 119.99925 * 179.97438 * 15 14 11 18 18 N 1.31513 * 119.99917 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 120.00071 * 0.02562 * 17 15 14 20 20 H 1.48494 * 109.47270 * 90.00009 * 19 17 15 21 21 H 1.48500 * 109.47021 * 210.00137 * 19 17 15 22 22 H 1.48499 * 109.47017 * 329.99785 * 19 17 15 23 23 C 1.38077 * 119.96557 * 270.02150 * 4 2 1 24 24 H 1.09004 * 109.47181 * 310.94219 * 1 2 3 25 25 H 1.09005 * 109.46992 * 70.93705 * 1 2 3 26 26 H 1.08995 * 109.47781 * 190.94135 * 1 2 3 27 27 H 1.08005 * 119.92449 * 0.02562 * 5 4 2 28 28 H 1.08002 * 119.96124 * 179.97438 * 6 5 4 29 29 H 1.07998 * 120.04085 * 179.72215 * 7 6 5 30 30 H 0.96998 * 120.00154 * 180.29669 * 9 8 7 31 31 H 1.09000 * 109.46951 * 300.00115 * 10 9 8 32 32 H 1.09005 * 109.47062 * 59.99936 * 10 9 8 33 33 H 1.08994 * 109.47197 * 59.99746 * 12 11 10 34 34 H 1.08999 * 109.47288 * 180.02562 * 12 11 10 35 35 H 1.09005 * 109.47065 * 299.99965 * 12 11 10 36 36 H 1.09001 * 109.47004 * 60.00401 * 13 11 10 37 37 H 1.09007 * 109.46762 * 179.97438 * 13 11 10 38 38 H 1.08994 * 109.47056 * 300.00037 * 13 11 10 39 39 H 1.09000 * 109.46961 * 300.00127 * 14 11 10 40 40 H 1.08997 * 109.47370 * 59.99769 * 14 11 10 41 41 H 0.97004 * 119.99831 * 180.02562 * 18 17 15 42 42 H 1.08007 * 120.03506 * 359.95661 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3398 0.0000 4 6 2.2103 -0.5606 1.6227 5 6 2.3657 -1.9129 1.8677 6 6 2.6761 -2.3572 3.1397 7 6 2.8269 -1.4514 4.1716 8 6 2.6776 -0.0922 3.9277 9 7 2.8351 0.8268 4.9677 10 6 3.1645 0.3580 6.3160 11 6 3.2803 1.5574 7.2589 12 6 4.3835 2.4931 6.7606 13 6 1.9490 2.3106 7.2918 14 6 3.6249 1.0678 8.6669 15 6 3.7384 2.2491 9.5957 16 1 3.5810 3.2490 9.2194 17 6 4.0433 2.0532 10.9260 18 7 4.1428 3.0842 11.7365 19 14 4.3163 0.3237 11.5769 20 1 5.7528 -0.0312 11.4520 21 1 3.9138 0.2629 13.0050 22 1 3.4993 -0.6356 10.7911 23 6 2.3650 0.3506 2.6486 24 1 -0.3634 0.6734 0.7763 25 1 -0.3633 0.3357 -0.9714 26 1 -0.3634 -1.0089 0.1950 27 1 2.2442 -2.6236 1.0635 28 1 2.7963 -3.4139 3.3276 29 1 3.0649 -1.7994 5.1659 30 1 2.7264 1.7755 4.7972 31 1 2.3787 -0.3090 6.6708 32 1 4.1132 -0.1782 6.2926 33 1 4.1385 2.8419 5.7575 34 1 4.4663 3.3473 7.4326 35 1 5.3320 1.9565 6.7371 36 1 1.1631 1.6440 7.6469 37 1 2.0314 3.1648 7.9639 38 1 1.7040 2.6594 6.2887 39 1 2.8393 0.4009 9.0220 40 1 4.5735 0.5314 8.6430 41 1 4.3577 2.9464 12.6723 42 1 2.2438 1.4066 2.4566 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121771976.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:19 Heat of formation + Delta-G solvation = -23.753249 kcal Electronic energy + Delta-G solvation = -21250.196177 eV Core-core repulsion = 18128.307018 eV Total energy + Delta-G solvation = -3121.889159 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.50667 -37.58810 -35.86345 -34.37111 -32.28610 -31.08976 -29.34762 -28.96421 -27.61579 -26.57577 -25.92609 -23.07341 -22.51659 -21.46953 -18.38070 -18.04748 -17.03123 -16.91267 -16.11907 -15.52136 -15.10075 -15.01282 -14.52689 -14.41243 -14.02120 -13.74240 -13.53388 -13.35085 -13.23497 -12.97423 -12.77672 -12.37805 -12.30897 -12.13579 -11.75610 -11.37290 -11.34200 -11.17721 -11.03147 -10.66845 -10.52357 -10.33434 -10.18088 -9.87468 -9.77912 -9.56402 -9.20451 -9.03744 -8.57705 -8.57259 -7.32645 -6.07718 -4.05298 0.89834 1.54915 1.78914 2.53557 3.26813 3.34950 3.37014 3.56939 3.68682 3.88408 4.41103 4.84838 4.92973 5.02074 5.09466 5.20209 5.24172 5.28130 5.45103 5.51533 5.56270 5.65518 5.71171 5.82464 5.99779 6.06181 6.12698 6.22092 6.29256 6.31615 6.43658 6.51710 6.56860 6.75107 6.86830 6.97943 7.01420 7.13766 7.30902 7.44746 7.74402 7.85217 8.49598 8.96565 9.54411 11.05173 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.030923 B = 0.003002 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.255158 B = 9326.137578 C = 9860.759667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.498 4.498 2 S 1.328 4.672 3 O -0.860 6.860 4 C -0.412 4.412 5 C -0.118 4.118 6 C -0.087 4.087 7 C -0.168 4.168 8 C 0.213 3.787 9 N -0.738 5.738 10 C 0.129 3.871 11 C -0.061 4.061 12 C -0.128 4.128 13 C -0.128 4.128 14 C -0.001 4.001 15 C -0.512 4.512 16 H 0.078 0.922 17 C 0.066 3.934 18 N -0.903 5.903 19 Si 0.876 3.124 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.266 1.266 23 C -0.136 4.136 24 H 0.081 0.919 25 H 0.102 0.898 26 H 0.110 0.890 27 H 0.128 0.872 28 H 0.124 0.876 29 H 0.124 0.876 30 H 0.400 0.600 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.031 0.969 34 H 0.072 0.928 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.072 0.928 38 H 0.031 0.969 39 H 0.017 0.983 40 H 0.013 0.987 41 H 0.263 0.737 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.646 -13.042 -23.854 27.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.654 4.654 2 S 1.525 4.475 3 O -0.856 6.856 4 C -0.509 4.509 5 C -0.140 4.140 6 C -0.107 4.107 7 C -0.192 4.192 8 C 0.106 3.894 9 N -0.366 5.366 10 C 0.005 3.995 11 C -0.062 4.062 12 C -0.186 4.186 13 C -0.185 4.185 14 C -0.038 4.038 15 C -0.550 4.550 16 H 0.096 0.904 17 C -0.135 4.135 18 N -0.542 5.542 19 Si 0.704 3.296 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.191 1.191 23 C -0.160 4.160 24 H 0.100 0.900 25 H 0.121 0.879 26 H 0.129 0.871 27 H 0.146 0.854 28 H 0.141 0.859 29 H 0.142 0.858 30 H 0.236 0.764 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.050 0.950 34 H 0.091 0.909 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.091 0.909 38 H 0.050 0.950 39 H 0.035 0.965 40 H 0.031 0.969 41 H 0.072 0.928 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.960 -12.768 -24.182 27.792 hybrid contribution -0.722 0.724 2.389 2.599 sum -5.683 -12.044 -21.793 25.540 Atomic orbital electron populations 1.27754 1.22689 1.07896 1.07063 1.69342 0.85906 0.99538 0.92693 1.93113 1.73023 1.37270 1.82146 1.27242 1.09529 0.99395 1.14774 1.20463 1.03166 0.93187 0.97164 1.20982 0.97907 0.99062 0.92723 1.20892 1.06594 0.91466 1.00207 1.18016 0.93215 0.90106 0.88105 1.45048 1.76637 1.07722 1.07152 1.21631 0.99262 0.97703 0.80875 1.20649 0.95930 0.93515 0.96075 1.21762 0.97556 1.00419 0.98818 1.21755 0.95962 1.01226 0.99557 1.19586 0.95946 0.97431 0.90884 1.21079 1.47555 0.93626 0.92728 0.90431 1.25010 0.94919 0.96525 0.97018 1.69904 1.49338 1.29919 1.05064 0.86837 0.78855 0.85797 0.78126 1.20357 1.21453 1.19106 1.20512 1.04791 0.99435 0.91287 0.90021 0.87888 0.87123 0.85368 0.85853 0.85784 0.76366 0.92615 0.92578 0.94964 0.90928 0.93466 0.93510 0.90916 0.95018 0.96481 0.96895 0.92752 0.86073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -3.38 10.70 101.05 1.08 -2.30 16 2 S 1.33 10.40 14.19 -107.50 -1.52 8.87 16 3 O -0.86 -12.81 16.90 -35.23 -0.60 -13.40 16 4 C -0.41 -4.44 5.61 -39.61 -0.22 -4.66 16 5 C -0.12 -1.04 9.75 -39.55 -0.39 -1.42 16 6 C -0.09 -0.89 10.04 -39.61 -0.40 -1.28 16 7 C -0.17 -2.16 9.31 -39.38 -0.37 -2.52 16 8 C 0.21 3.05 6.65 -83.78 -0.56 2.49 16 9 N -0.74 -10.99 5.14 -58.63 -0.30 -11.30 16 10 C 0.13 2.07 3.80 -4.04 -0.02 2.06 16 11 C -0.06 -1.14 0.54 -154.51 -0.08 -1.23 16 12 C -0.13 -2.36 8.05 37.16 0.30 -2.06 16 13 C -0.13 -2.33 8.05 37.16 0.30 -2.03 16 14 C 0.00 -0.02 3.11 -27.88 -0.09 -0.10 16 15 C -0.51 -13.81 8.20 -34.44 -0.28 -14.10 16 16 H 0.08 2.24 5.92 -52.49 -0.31 1.93 16 17 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 18 N -0.90 -27.35 13.96 55.43 0.77 -26.58 16 19 Si 0.88 21.32 27.47 -169.99 -4.67 16.65 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 23 C -0.14 -1.91 9.29 -39.39 -0.37 -2.28 16 24 H 0.08 0.76 8.14 -51.92 -0.42 0.34 16 25 H 0.10 0.56 8.14 -51.92 -0.42 0.13 16 26 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.13 0.56 8.06 -52.48 -0.42 0.13 16 28 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 29 H 0.12 1.54 6.73 -52.49 -0.35 1.19 16 30 H 0.40 5.90 6.18 -40.82 -0.25 5.64 16 31 H 0.06 0.89 7.94 -51.93 -0.41 0.47 16 32 H 0.06 0.89 7.96 -51.93 -0.41 0.48 16 33 H 0.03 0.52 6.86 -51.93 -0.36 0.16 16 34 H 0.07 1.49 6.62 -51.93 -0.34 1.15 16 35 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 1.48 6.62 -51.93 -0.34 1.14 16 38 H 0.03 0.50 6.86 -51.93 -0.36 0.14 16 39 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 40 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 41 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.12 1.85 7.45 -52.48 -0.39 1.46 16 LS Contribution 346.01 15.07 5.21 5.21 Total: -1.00 -35.32 346.01 -8.71 -44.03 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -6.43 Total: 4.15 kcal Atomic # 6 Polarization: -26.46 SS G_CDS: -1.18 Total: -27.64 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 0.47 Total: -37.87 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: -0.60 Total: -13.40 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.67 Total: 16.65 kcal Atomic # 16 Polarization: 10.40 SS G_CDS: -1.52 Total: 8.87 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.32 -8.71 -44.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121771976.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.276 kcal (2) G-P(sol) polarization free energy of solvation -35.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds