Wall clock time and date at job start Tue Mar 31 2020 07:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42103 * 109.47032 * 2 1 4 4 C 1.76199 * 102.99781 * 109.05714 * 2 1 3 5 5 C 1.38309 * 119.96301 * 90.00033 * 4 2 1 6 6 C 1.38264 * 120.15307 * 180.02562 * 5 4 2 7 7 C 1.38126 * 120.07351 * 0.25970 * 6 5 4 8 8 C 1.38898 * 119.91986 * 359.44369 * 7 6 5 9 9 N 1.39675 * 120.07050 * 180.27821 * 8 7 6 10 10 C 1.46500 * 120.00232 * 0.29683 * 9 8 7 11 11 C 1.52998 * 109.47206 * 179.97438 * 10 9 8 12 12 C 1.52999 * 109.47221 * 300.00092 * 11 10 9 13 13 C 1.52999 * 109.47007 * 59.99944 * 11 10 9 14 14 C 1.53002 * 109.47036 * 180.02562 * 11 10 9 15 15 C 1.50704 * 109.47045 * 180.02562 * 14 11 10 16 16 H 1.07997 * 120.00025 * 359.97438 * 15 14 11 17 17 C 1.37874 * 119.99925 * 179.97438 * 15 14 11 18 18 N 1.31513 * 119.99917 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 120.00071 * 0.02562 * 17 15 14 20 20 H 1.48494 * 109.47270 * 90.00009 * 19 17 15 21 21 H 1.48500 * 109.47021 * 210.00137 * 19 17 15 22 22 H 1.48499 * 109.47017 * 329.99785 * 19 17 15 23 23 C 1.38077 * 119.96557 * 270.02150 * 4 2 1 24 24 H 1.09004 * 109.47181 * 310.94219 * 1 2 3 25 25 H 1.09005 * 109.46992 * 70.93705 * 1 2 3 26 26 H 1.08995 * 109.47781 * 190.94135 * 1 2 3 27 27 H 1.08005 * 119.92449 * 0.02562 * 5 4 2 28 28 H 1.08002 * 119.96124 * 179.97438 * 6 5 4 29 29 H 1.07998 * 120.04085 * 179.72215 * 7 6 5 30 30 H 0.96998 * 120.00154 * 180.29669 * 9 8 7 31 31 H 1.09000 * 109.46951 * 300.00115 * 10 9 8 32 32 H 1.09005 * 109.47062 * 59.99936 * 10 9 8 33 33 H 1.08994 * 109.47197 * 59.99746 * 12 11 10 34 34 H 1.08999 * 109.47288 * 180.02562 * 12 11 10 35 35 H 1.09005 * 109.47065 * 299.99965 * 12 11 10 36 36 H 1.09001 * 109.47004 * 60.00401 * 13 11 10 37 37 H 1.09007 * 109.46762 * 179.97438 * 13 11 10 38 38 H 1.08994 * 109.47056 * 300.00037 * 13 11 10 39 39 H 1.09000 * 109.46961 * 300.00127 * 14 11 10 40 40 H 1.08997 * 109.47370 * 59.99769 * 14 11 10 41 41 H 0.97004 * 119.99831 * 180.02562 * 18 17 15 42 42 H 1.08007 * 120.03506 * 359.95661 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3398 0.0000 4 6 2.2103 -0.5606 1.6227 5 6 2.3657 -1.9129 1.8677 6 6 2.6761 -2.3572 3.1397 7 6 2.8269 -1.4514 4.1716 8 6 2.6776 -0.0922 3.9277 9 7 2.8351 0.8268 4.9677 10 6 3.1645 0.3580 6.3160 11 6 3.2803 1.5574 7.2589 12 6 4.3835 2.4931 6.7606 13 6 1.9490 2.3106 7.2918 14 6 3.6249 1.0678 8.6669 15 6 3.7384 2.2491 9.5957 16 1 3.5810 3.2490 9.2194 17 6 4.0433 2.0532 10.9260 18 7 4.1428 3.0842 11.7365 19 14 4.3163 0.3237 11.5769 20 1 5.7528 -0.0312 11.4520 21 1 3.9138 0.2629 13.0050 22 1 3.4993 -0.6356 10.7911 23 6 2.3650 0.3506 2.6486 24 1 -0.3634 0.6734 0.7763 25 1 -0.3633 0.3357 -0.9714 26 1 -0.3634 -1.0089 0.1950 27 1 2.2442 -2.6236 1.0635 28 1 2.7963 -3.4139 3.3276 29 1 3.0649 -1.7994 5.1659 30 1 2.7264 1.7755 4.7972 31 1 2.3787 -0.3090 6.6708 32 1 4.1132 -0.1782 6.2926 33 1 4.1385 2.8419 5.7575 34 1 4.4663 3.3473 7.4326 35 1 5.3320 1.9565 6.7371 36 1 1.1631 1.6440 7.6469 37 1 2.0314 3.1648 7.9639 38 1 1.7040 2.6594 6.2887 39 1 2.8393 0.4009 9.0220 40 1 4.5735 0.5314 8.6430 41 1 4.3577 2.9464 12.6723 42 1 2.2438 1.4066 2.4566 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121771976.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:18 Heat of formation + Delta-G solvation = -48.162280 kcal Electronic energy + Delta-G solvation = -21251.254632 eV Core-core repulsion = 18128.307018 eV Total energy + Delta-G solvation = -3122.947614 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.51250 -38.94210 -36.82480 -35.67646 -34.25657 -31.94823 -30.59426 -29.59033 -29.27184 -28.12039 -27.21593 -24.55385 -23.64030 -22.57287 -19.77305 -19.06185 -18.94817 -17.84098 -17.16330 -16.57637 -16.22637 -16.00932 -15.93351 -15.70246 -15.19689 -15.02606 -14.58881 -14.58183 -14.36923 -14.22418 -14.19123 -13.69454 -13.47338 -13.01464 -12.98372 -12.89722 -12.74461 -12.54424 -12.37236 -12.27863 -12.12920 -11.78800 -11.63998 -11.31158 -11.15868 -10.98379 -10.96984 -10.74539 -10.07091 -9.33943 -8.34453 -8.25905 -6.27673 0.07187 0.69916 1.07914 1.34825 1.36328 1.47161 1.86101 2.36533 2.50391 2.83888 3.09171 3.10766 3.83469 3.97877 3.99222 4.07912 4.24302 4.34879 4.49881 4.52420 4.55376 4.57930 4.63612 4.67030 4.76789 4.84113 4.94008 4.97259 4.99261 5.20139 5.20943 5.29348 5.30969 5.35815 5.44872 5.45019 5.58294 5.61355 5.69865 5.94987 6.32072 6.43006 6.73325 6.79451 7.35196 8.90271 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.030923 B = 0.003002 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.255158 B = 9326.137578 C = 9860.759667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.496 4.496 2 S 1.400 4.600 3 O -0.934 6.934 4 C -0.423 4.423 5 C -0.099 4.099 6 C -0.087 4.087 7 C -0.183 4.183 8 C 0.188 3.812 9 N -0.745 5.745 10 C 0.146 3.854 11 C -0.059 4.059 12 C -0.122 4.122 13 C -0.121 4.121 14 C 0.001 3.999 15 C -0.509 4.509 16 H 0.043 0.957 17 C 0.001 3.999 18 N -0.955 5.955 19 Si 0.943 3.057 20 H -0.270 1.270 21 H -0.289 1.289 22 H -0.245 1.245 23 C -0.167 4.167 24 H 0.054 0.946 25 H 0.121 0.879 26 H 0.144 0.856 27 H 0.185 0.815 28 H 0.158 0.842 29 H 0.124 0.876 30 H 0.396 0.604 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.041 0.959 35 H 0.048 0.952 36 H 0.048 0.952 37 H 0.041 0.959 38 H 0.053 0.947 39 H 0.020 0.980 40 H 0.018 0.982 41 H 0.263 0.737 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.384 -17.343 -26.437 32.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.654 4.654 2 S 1.599 4.401 3 O -0.930 6.930 4 C -0.520 4.520 5 C -0.120 4.120 6 C -0.107 4.107 7 C -0.206 4.206 8 C 0.083 3.917 9 N -0.375 5.375 10 C 0.022 3.978 11 C -0.059 4.059 12 C -0.179 4.179 13 C -0.178 4.178 14 C -0.036 4.036 15 C -0.547 4.547 16 H 0.061 0.939 17 C -0.195 4.195 18 N -0.596 5.596 19 Si 0.767 3.233 20 H -0.195 1.195 21 H -0.215 1.215 22 H -0.168 1.168 23 C -0.191 4.191 24 H 0.074 0.926 25 H 0.139 0.861 26 H 0.162 0.838 27 H 0.203 0.797 28 H 0.175 0.825 29 H 0.142 0.858 30 H 0.232 0.768 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.072 0.928 39 H 0.039 0.961 40 H 0.037 0.963 41 H 0.072 0.928 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.688 -17.093 -26.797 32.290 hybrid contribution -0.589 2.053 3.032 3.708 sum -6.277 -15.041 -23.765 28.817 Atomic orbital electron populations 1.27750 1.20920 1.09440 1.07268 1.68403 0.85681 0.96257 0.89761 1.92983 1.75820 1.41071 1.83094 1.27649 1.09128 1.00183 1.15012 1.21149 0.99597 0.92991 0.98265 1.21480 0.96366 1.00343 0.92466 1.21133 1.06990 0.91175 1.01290 1.18190 0.94858 0.90737 0.87903 1.44885 1.77965 1.07729 1.06893 1.21306 0.99644 0.95943 0.80946 1.20535 0.95856 0.94717 0.94782 1.21665 0.97758 0.99277 0.99195 1.21658 0.96034 1.00052 1.00087 1.19529 0.96243 0.95635 0.92231 1.21380 1.45918 0.93869 0.93498 0.93900 1.25944 0.95085 1.00921 0.97504 1.70067 1.51513 1.32561 1.05474 0.85769 0.79347 0.80759 0.77440 1.19505 1.21510 1.16837 1.20494 1.07236 0.98894 0.92460 0.92630 0.86068 0.83804 0.79750 0.82486 0.85800 0.76804 0.92201 0.92280 0.92895 0.93997 0.93303 0.93253 0.94007 0.92845 0.96122 0.96331 0.92799 0.88820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -5.23 10.70 113.37 1.21 -4.02 16 2 S 1.40 18.86 14.19 -56.49 -0.80 18.06 16 3 O -0.93 -27.89 16.90 -148.98 -2.52 -30.40 16 4 C -0.42 -8.12 5.61 22.25 0.12 -7.99 16 5 C -0.10 -1.27 9.75 22.29 0.22 -1.05 16 6 C -0.09 -1.40 10.04 22.25 0.22 -1.18 16 7 C -0.18 -4.28 9.31 22.40 0.21 -4.07 16 8 C 0.19 5.26 6.65 38.21 0.25 5.52 16 9 N -0.75 -22.08 5.14 -339.41 -1.74 -23.83 16 10 C 0.15 4.55 3.80 86.38 0.33 4.87 16 11 C -0.06 -2.19 0.54 -52.18 -0.03 -2.22 16 12 C -0.12 -4.57 8.05 71.98 0.58 -3.99 16 13 C -0.12 -4.51 8.05 71.98 0.58 -3.93 16 14 C 0.00 0.07 3.11 29.85 0.09 0.16 16 15 C -0.51 -28.31 8.20 25.60 0.21 -28.10 16 16 H 0.04 2.63 5.92 -2.91 -0.02 2.61 16 17 C 0.00 0.08 5.47 84.65 0.46 0.54 16 18 N -0.95 -59.93 13.96 21.45 0.30 -59.63 16 19 Si 0.94 43.96 27.47 68.60 1.88 45.84 16 20 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 21 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 22 H -0.24 -10.48 6.54 99.48 0.65 -9.83 16 23 C -0.17 -4.65 9.29 22.40 0.21 -4.44 16 24 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.12 0.90 8.14 -2.39 -0.02 0.89 16 26 H 0.14 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.19 0.25 8.06 -2.91 -0.02 0.22 16 28 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 29 H 0.12 2.82 6.73 -2.91 -0.02 2.80 16 30 H 0.40 11.90 6.18 -92.71 -0.57 11.32 16 31 H 0.06 1.81 7.94 -2.39 -0.02 1.79 16 32 H 0.06 1.80 7.96 -2.38 -0.02 1.78 16 33 H 0.05 1.74 6.86 -2.39 -0.02 1.72 16 34 H 0.04 1.81 6.62 -2.39 -0.02 1.79 16 35 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 36 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.04 1.79 6.62 -2.38 -0.02 1.77 16 38 H 0.05 1.73 6.86 -2.39 -0.02 1.71 16 39 H 0.02 0.92 7.20 -2.39 -0.02 0.90 16 40 H 0.02 0.82 7.57 -2.39 -0.02 0.80 16 41 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 42 H 0.09 3.04 7.45 -2.91 -0.02 3.02 16 Total: -1.00 -81.66 346.01 2.18 -79.48 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: 0.38 Total: 20.36 kcal Atomic # 6 Polarization: -54.57 SS G_CDS: 4.67 Total: -49.89 kcal Atomic # 7 Polarization: -82.01 SS G_CDS: -1.44 Total: -83.45 kcal Atomic # 8 Polarization: -27.89 SS G_CDS: -2.52 Total: -30.40 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 1.88 Total: 45.84 kcal Atomic # 16 Polarization: 18.86 SS G_CDS: -0.80 Total: 18.06 kcal Total: -81.66 2.18 -79.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121771976.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.319 kcal (2) G-P(sol) polarization free energy of solvation -81.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds