Wall clock time and date at job start Tue Mar 31 2020 07:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46865 * 2 1 4 4 C 1.52996 * 109.47244 * 119.99957 * 2 1 3 5 5 N 1.46503 * 109.47019 * 174.99969 * 4 2 1 6 6 C 1.46504 * 119.99959 * 96.18981 * 5 4 2 7 7 C 1.50703 * 109.47089 * 70.62190 * 6 5 4 8 8 H 1.08001 * 119.99565 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00172 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99879 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00174 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.46921 * 0.02562 * 11 9 7 13 13 H 1.48491 * 109.46949 * 120.00412 * 11 9 7 14 14 H 1.48505 * 109.46709 * 240.00155 * 11 9 7 15 15 C 1.34779 * 120.00216 * 276.18832 * 5 4 2 16 16 O 1.21587 * 119.99860 * 1.78279 * 15 5 4 17 17 C 1.47541 * 120.00012 * 181.77439 * 15 5 4 18 18 C 1.39723 * 120.17595 * 32.51492 * 17 15 5 19 19 C 1.37983 * 119.87770 * 179.80844 * 18 17 15 20 20 F 1.35102 * 119.87712 * 180.20745 * 19 18 17 21 21 C 1.38731 * 120.25187 * 0.44685 * 19 18 17 22 22 C 1.38058 * 120.35784 * 359.78698 * 21 19 18 23 23 C 1.38685 * 120.11943 * 359.97438 * 22 21 19 24 24 O 1.35699 * 120.12442 * 179.97438 * 23 22 21 25 25 H 1.09001 * 109.46953 * 299.99469 * 1 2 3 26 26 H 1.08995 * 109.47234 * 59.99882 * 1 2 3 27 27 H 1.09005 * 109.46816 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46953 * 240.00531 * 2 1 3 29 29 H 1.09001 * 109.46902 * 60.00500 * 3 2 1 30 30 H 1.09007 * 109.46852 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.47291 * 300.00084 * 3 2 1 32 32 H 1.09002 * 109.47041 * 55.00777 * 4 2 1 33 33 H 1.08996 * 109.47127 * 294.99925 * 4 2 1 34 34 H 1.08991 * 109.47394 * 190.62473 * 6 5 4 35 35 H 1.09004 * 109.46944 * 310.62741 * 6 5 4 36 36 H 0.96997 * 120.00367 * 179.97438 * 10 9 7 37 37 H 1.08002 * 120.06121 * 0.02562 * 18 17 15 38 38 H 1.07995 * 119.82255 * 179.76198 * 21 19 18 39 39 H 1.08011 * 119.93719 * 179.97438 * 22 21 19 40 40 H 0.96696 * 113.99897 * 270.01870 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5001 -0.8263 1.1905 6 6 4.3340 0.1627 1.8781 7 6 4.2220 -0.0345 3.3679 8 1 3.5930 -0.8186 3.7630 9 6 4.9234 0.7851 4.2265 10 7 5.6897 1.7395 3.7453 11 14 4.7852 0.5401 6.0732 12 1 3.8669 -0.5924 6.3549 13 1 6.1269 0.2403 6.6345 14 1 4.2525 1.7774 6.6982 15 6 4.0762 -1.8329 0.5039 16 8 3.3849 -2.6351 -0.0936 17 6 5.5458 -1.9614 0.4773 18 6 6.3052 -1.5699 1.5829 19 6 7.6789 -1.6964 1.5528 20 9 8.4128 -1.3218 2.6234 21 6 8.3097 -2.2022 0.4254 22 6 7.5696 -2.5875 -0.6744 23 6 6.1877 -2.4716 -0.6587 24 8 5.4602 -2.8498 -1.7399 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6055 -1.7198 1.2950 33 1 1.7517 -0.1583 2.1369 34 1 5.3726 0.0380 1.5721 35 1 3.9965 1.1661 1.6181 36 1 6.1829 2.3164 4.3493 37 1 5.8176 -1.1723 2.4607 38 1 9.3855 -2.2946 0.4080 39 1 8.0678 -2.9801 -1.5487 40 1 5.3144 -2.1425 -2.3829 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128560662.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:34 Heat of formation + Delta-G solvation = -93.158730 kcal Electronic energy + Delta-G solvation = -24846.987666 eV Core-core repulsion = 21155.875683 eV Total energy + Delta-G solvation = -3691.111983 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -48.37607 -40.14266 -38.32413 -36.32315 -35.91431 -34.20627 -32.42673 -31.00125 -28.98677 -27.69934 -26.77344 -25.95400 -23.64755 -22.52735 -22.22444 -20.17938 -19.02810 -18.01349 -16.98081 -16.66281 -16.53580 -15.83797 -15.40627 -15.10562 -14.90858 -14.55280 -14.44747 -14.28498 -13.62860 -13.47146 -13.11208 -13.00223 -12.59468 -12.42793 -12.23993 -11.94641 -11.78464 -11.48724 -11.33122 -11.15234 -11.04962 -10.91566 -10.68132 -10.48599 -10.37765 -10.22485 -10.03597 -9.77741 -9.11697 -8.84146 -8.48173 -8.14048 -7.71335 -6.30155 -4.39470 1.08598 1.43046 3.16943 3.24970 3.27168 3.30916 3.78991 3.96062 4.25216 4.40729 4.62341 4.97519 5.00627 5.15048 5.27449 5.33117 5.38508 5.49118 5.66980 5.88608 5.94587 6.02336 6.05945 6.17285 6.19370 6.27692 6.31183 6.38167 6.43747 6.44790 6.57695 6.64222 6.76149 6.80117 7.11645 7.16568 7.45474 7.63431 7.86786 7.90569 8.29448 8.68247 8.93520 9.29553 10.75063 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.009419 B = 0.009102 C = 0.005099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2971.878778 B = 3075.348836 C = 5490.342327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 C -0.145 4.145 4 C 0.129 3.871 5 N -0.585 5.585 6 C 0.209 3.791 7 C -0.548 4.548 8 H 0.066 0.934 9 C 0.070 3.930 10 N -0.879 5.879 11 Si 0.894 3.106 12 H -0.270 1.270 13 H -0.280 1.280 14 H -0.281 1.281 15 C 0.552 3.448 16 O -0.547 6.547 17 C -0.131 4.131 18 C -0.099 4.099 19 C 0.076 3.924 20 F -0.135 7.135 21 C -0.123 4.123 22 C -0.143 4.143 23 C 0.141 3.859 24 O -0.478 6.478 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.043 0.957 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.058 0.942 35 H 0.039 0.961 36 H 0.268 0.732 37 H 0.197 0.803 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.405 -2.260 -7.683 8.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 C -0.202 4.202 4 C 0.006 3.994 5 N -0.314 5.314 6 C 0.090 3.910 7 C -0.586 4.586 8 H 0.084 0.916 9 C -0.135 4.135 10 N -0.515 5.515 11 Si 0.721 3.279 12 H -0.195 1.195 13 H -0.206 1.206 14 H -0.207 1.207 15 C 0.340 3.660 16 O -0.427 6.427 17 C -0.135 4.135 18 C -0.117 4.117 19 C 0.057 3.943 20 F -0.113 7.113 21 C -0.142 4.142 22 C -0.161 4.161 23 C 0.095 3.905 24 O -0.288 6.288 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.076 0.924 35 H 0.057 0.943 36 H 0.078 0.922 37 H 0.213 0.787 38 H 0.153 0.847 39 H 0.155 0.845 40 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 0.166 -3.023 -7.601 8.182 hybrid contribution 0.288 0.642 1.066 1.277 sum 0.454 -2.381 -6.535 6.970 Atomic orbital electron populations 1.21744 0.95326 1.01432 1.01381 1.21475 0.95282 0.96788 0.99462 1.21890 1.01966 0.95490 1.00857 1.21356 0.80116 1.00406 0.97548 1.48105 1.06823 1.27225 1.49255 1.20224 0.91498 0.87488 0.91785 1.21468 1.29126 1.17261 0.90726 0.91618 1.24967 0.94603 0.94519 0.99382 1.69919 1.27795 1.18235 1.35595 0.86482 0.78315 0.78376 0.84705 1.19471 1.20553 1.20689 1.17978 0.86730 0.81619 0.79693 1.90731 1.63913 1.42880 1.45222 1.20265 0.94712 1.03024 0.95473 1.22746 0.92374 0.94745 1.01848 1.17595 0.89593 1.02032 0.85110 1.91517 1.76770 1.89273 1.53778 1.21102 1.00705 1.00025 0.92399 1.21050 0.92482 1.03189 0.99391 1.18434 0.89050 0.95339 0.87706 1.84823 1.73552 1.38857 1.31534 0.92692 0.93047 0.92838 0.91270 0.92561 0.91945 0.93785 0.91492 0.89719 0.92446 0.94309 0.92249 0.78701 0.84653 0.84521 0.75784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.19 37.16 0.34 -1.51 16 2 C -0.11 -1.76 3.08 -90.62 -0.28 -2.04 16 3 C -0.14 -2.28 8.47 37.16 0.31 -1.96 16 4 C 0.13 2.38 4.65 -4.04 -0.02 2.36 16 5 N -0.58 -12.06 2.25 -176.29 -0.40 -12.46 16 6 C 0.21 4.73 4.20 -5.19 -0.02 4.71 16 7 C -0.55 -13.48 7.14 -34.44 -0.25 -13.72 16 8 H 0.07 1.65 7.81 -52.49 -0.41 1.24 16 9 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 10 N -0.88 -23.05 13.29 55.43 0.74 -22.31 16 11 Si 0.89 19.93 29.54 -169.99 -5.02 14.91 16 12 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 13 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 14 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 15 C 0.55 11.68 7.25 -12.47 -0.09 11.59 16 16 O -0.55 -12.49 15.52 -13.23 -0.21 -12.69 16 17 C -0.13 -2.57 5.42 -104.85 -0.57 -3.14 16 18 C -0.10 -2.00 7.33 -39.12 -0.29 -2.28 16 19 C 0.08 1.39 7.28 -39.49 -0.29 1.10 16 20 F -0.13 -2.62 17.26 2.25 0.04 -2.58 16 21 C -0.12 -1.81 10.01 -39.47 -0.39 -2.20 16 22 C -0.14 -2.02 9.97 -39.48 -0.39 -2.41 16 23 C 0.14 2.38 6.68 -38.72 -0.26 2.12 16 24 O -0.48 -7.61 12.07 -37.32 -0.45 -8.06 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.07 1.19 8.11 -51.93 -0.42 0.77 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 1.10 6.00 -51.93 -0.31 0.78 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 1.26 7.64 -51.93 -0.40 0.86 16 33 H 0.08 1.58 7.73 -51.93 -0.40 1.18 16 34 H 0.06 1.35 4.10 -51.93 -0.21 1.14 16 35 H 0.04 0.92 6.05 -51.93 -0.31 0.61 16 36 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 37 H 0.20 4.48 4.10 -52.49 -0.22 4.27 16 38 H 0.14 1.57 8.06 -52.49 -0.42 1.15 16 39 H 0.14 1.50 8.06 -52.48 -0.42 1.08 16 40 H 0.39 4.37 9.06 45.56 0.41 4.79 16 LS Contribution 333.12 15.07 5.02 5.02 Total: -1.00 -28.68 333.12 -6.93 -35.61 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -4.36 Total: 8.28 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: -2.29 Total: -5.71 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: 0.34 Total: -34.78 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -0.66 Total: -20.75 kcal Atomic # 9 Polarization: -2.62 SS G_CDS: 0.04 Total: -2.58 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.68 -6.93 -35.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128560662.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.544 kcal (2) G-P(sol) polarization free energy of solvation -28.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds