Wall clock time and date at job start Tue Mar 31 2020 07:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46865 * 2 1 4 4 C 1.52996 * 109.47244 * 119.99957 * 2 1 3 5 5 N 1.46503 * 109.47019 * 174.99969 * 4 2 1 6 6 C 1.46504 * 119.99959 * 96.18981 * 5 4 2 7 7 C 1.50703 * 109.47089 * 70.62190 * 6 5 4 8 8 H 1.08001 * 119.99565 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00172 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99879 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00174 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.46921 * 0.02562 * 11 9 7 13 13 H 1.48491 * 109.46949 * 120.00412 * 11 9 7 14 14 H 1.48505 * 109.46709 * 240.00155 * 11 9 7 15 15 C 1.34779 * 120.00216 * 276.18832 * 5 4 2 16 16 O 1.21587 * 119.99860 * 1.78279 * 15 5 4 17 17 C 1.47541 * 120.00012 * 181.77439 * 15 5 4 18 18 C 1.39723 * 120.17595 * 32.51492 * 17 15 5 19 19 C 1.37983 * 119.87770 * 179.80844 * 18 17 15 20 20 F 1.35102 * 119.87712 * 180.20745 * 19 18 17 21 21 C 1.38731 * 120.25187 * 0.44685 * 19 18 17 22 22 C 1.38058 * 120.35784 * 359.78698 * 21 19 18 23 23 C 1.38685 * 120.11943 * 359.97438 * 22 21 19 24 24 O 1.35699 * 120.12442 * 179.97438 * 23 22 21 25 25 H 1.09001 * 109.46953 * 299.99469 * 1 2 3 26 26 H 1.08995 * 109.47234 * 59.99882 * 1 2 3 27 27 H 1.09005 * 109.46816 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46953 * 240.00531 * 2 1 3 29 29 H 1.09001 * 109.46902 * 60.00500 * 3 2 1 30 30 H 1.09007 * 109.46852 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.47291 * 300.00084 * 3 2 1 32 32 H 1.09002 * 109.47041 * 55.00777 * 4 2 1 33 33 H 1.08996 * 109.47127 * 294.99925 * 4 2 1 34 34 H 1.08991 * 109.47394 * 190.62473 * 6 5 4 35 35 H 1.09004 * 109.46944 * 310.62741 * 6 5 4 36 36 H 0.96997 * 120.00367 * 179.97438 * 10 9 7 37 37 H 1.08002 * 120.06121 * 0.02562 * 18 17 15 38 38 H 1.07995 * 119.82255 * 179.76198 * 21 19 18 39 39 H 1.08011 * 119.93719 * 179.97438 * 22 21 19 40 40 H 0.96696 * 113.99897 * 270.01870 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5001 -0.8263 1.1905 6 6 4.3340 0.1627 1.8781 7 6 4.2220 -0.0345 3.3679 8 1 3.5930 -0.8186 3.7630 9 6 4.9234 0.7851 4.2265 10 7 5.6897 1.7395 3.7453 11 14 4.7852 0.5401 6.0732 12 1 3.8669 -0.5924 6.3549 13 1 6.1269 0.2403 6.6345 14 1 4.2525 1.7774 6.6982 15 6 4.0762 -1.8329 0.5039 16 8 3.3849 -2.6351 -0.0936 17 6 5.5458 -1.9614 0.4773 18 6 6.3052 -1.5699 1.5829 19 6 7.6789 -1.6964 1.5528 20 9 8.4128 -1.3218 2.6234 21 6 8.3097 -2.2022 0.4254 22 6 7.5696 -2.5875 -0.6744 23 6 6.1877 -2.4716 -0.6587 24 8 5.4602 -2.8498 -1.7399 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6055 -1.7198 1.2950 33 1 1.7517 -0.1583 2.1369 34 1 5.3726 0.0380 1.5721 35 1 3.9965 1.1661 1.6181 36 1 6.1829 2.3164 4.3493 37 1 5.8176 -1.1723 2.4607 38 1 9.3855 -2.2946 0.4080 39 1 8.0678 -2.9801 -1.5487 40 1 5.3144 -2.1425 -2.3829 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128560662.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:33 Heat of formation + Delta-G solvation = -109.336058 kcal Electronic energy + Delta-G solvation = -24847.689167 eV Core-core repulsion = 21155.875683 eV Total energy + Delta-G solvation = -3691.813485 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.82812 -41.63924 -39.75607 -37.75647 -37.34306 -35.79797 -34.24841 -32.35903 -30.35527 -29.48369 -28.01482 -27.42953 -25.29882 -24.12250 -23.57937 -21.55932 -20.49933 -19.31464 -18.70901 -18.39603 -18.02143 -17.26989 -16.94655 -16.57430 -16.37302 -16.22745 -16.00921 -15.67617 -15.03405 -14.85324 -14.54959 -14.46273 -14.21166 -13.86216 -13.67856 -13.38294 -13.03956 -13.00597 -12.86054 -12.78588 -12.61301 -12.35974 -12.13522 -12.11922 -11.81487 -11.69055 -11.58912 -11.52192 -10.76347 -10.62574 -9.99680 -9.53675 -9.37870 -8.24829 -6.39210 -0.27130 0.09864 1.36966 1.41551 1.50467 1.76251 2.22253 2.38167 2.54895 3.03974 3.16702 3.27081 3.58284 3.86246 3.98297 4.04005 4.11182 4.19509 4.30844 4.58565 4.67638 4.70941 4.78596 4.89635 4.91088 4.96143 5.01887 5.02677 5.05290 5.10575 5.16414 5.26411 5.28584 5.41892 5.47847 5.64348 5.74961 5.79605 6.00113 6.54625 6.75790 6.78049 7.23269 7.35378 8.79743 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.009419 B = 0.009102 C = 0.005099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2971.878778 B = 3075.348836 C = 5490.342327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.102 4.102 3 C -0.138 4.138 4 C 0.125 3.875 5 N -0.586 5.586 6 C 0.226 3.774 7 C -0.550 4.550 8 H 0.053 0.947 9 C 0.032 3.968 10 N -0.905 5.905 11 Si 0.947 3.053 12 H -0.271 1.271 13 H -0.280 1.280 14 H -0.275 1.275 15 C 0.549 3.451 16 O -0.570 6.570 17 C -0.159 4.159 18 C -0.119 4.119 19 C 0.055 3.945 20 F -0.147 7.147 21 C -0.099 4.099 22 C -0.122 4.122 23 C 0.146 3.854 24 O -0.488 6.488 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.037 0.963 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.053 0.947 35 H 0.025 0.975 36 H 0.269 0.731 37 H 0.162 0.838 38 H 0.177 0.823 39 H 0.183 0.817 40 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.182 -2.795 -9.089 9.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.122 4.122 3 C -0.196 4.196 4 C 0.002 3.998 5 N -0.315 5.315 6 C 0.106 3.894 7 C -0.588 4.588 8 H 0.072 0.928 9 C -0.170 4.170 10 N -0.543 5.543 11 Si 0.773 3.227 12 H -0.195 1.195 13 H -0.206 1.206 14 H -0.200 1.200 15 C 0.338 3.662 16 O -0.452 6.452 17 C -0.163 4.163 18 C -0.138 4.138 19 C 0.036 3.964 20 F -0.126 7.126 21 C -0.118 4.118 22 C -0.140 4.140 23 C 0.099 3.901 24 O -0.300 6.300 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.056 0.944 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.070 0.930 35 H 0.043 0.957 36 H 0.078 0.922 37 H 0.179 0.821 38 H 0.195 0.805 39 H 0.200 0.800 40 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 0.923 -3.544 -9.016 9.732 hybrid contribution 0.066 0.750 1.417 1.604 sum 0.989 -2.794 -7.600 8.157 Atomic orbital electron populations 1.21701 0.92745 1.02075 1.02723 1.21391 0.97338 0.96234 0.97232 1.21817 1.00327 0.95559 1.01865 1.21496 0.79139 1.00328 0.98832 1.48112 1.07532 1.26869 1.48940 1.19901 0.91517 0.87098 0.90896 1.21569 1.28625 1.16687 0.91937 0.92828 1.25555 0.94394 0.94376 1.02709 1.69993 1.28630 1.19019 1.36677 0.85659 0.78051 0.78320 0.80678 1.19507 1.20565 1.20009 1.18299 0.87677 0.81103 0.79145 1.90695 1.64692 1.43509 1.46333 1.20254 0.93673 1.05498 0.96882 1.22364 0.93617 0.96574 1.01247 1.17844 0.88954 1.03426 0.86190 1.91479 1.76785 1.89650 1.54709 1.21509 1.02691 0.97109 0.90441 1.21481 0.91004 1.01065 1.00406 1.18630 0.90239 0.94136 0.87060 1.84761 1.73710 1.39982 1.31539 0.91999 0.91035 0.92586 0.92511 0.92936 0.94393 0.91293 0.92128 0.90392 0.92978 0.95727 0.92170 0.82105 0.80545 0.79953 0.73427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.36 9.19 71.98 0.66 -2.70 16 2 C -0.10 -3.26 3.08 -10.79 -0.03 -3.30 16 3 C -0.14 -4.34 8.47 71.98 0.61 -3.73 16 4 C 0.12 4.75 4.65 86.38 0.40 5.16 16 5 N -0.59 -25.19 2.25 -829.91 -1.87 -27.06 16 6 C 0.23 10.71 4.20 85.63 0.36 11.07 16 7 C -0.55 -28.16 7.14 25.60 0.18 -27.98 16 8 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 9 C 0.03 1.65 5.46 84.65 0.46 2.12 16 10 N -0.91 -48.70 13.29 21.45 0.28 -48.41 16 11 Si 0.95 41.62 29.54 68.60 2.03 43.65 16 12 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 13 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 14 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 15 C 0.55 23.88 7.25 86.70 0.63 24.51 16 16 O -0.57 -26.46 15.52 13.72 0.21 -26.25 16 17 C -0.16 -6.31 5.42 -20.01 -0.11 -6.42 16 18 C -0.12 -4.95 7.33 22.57 0.17 -4.78 16 19 C 0.06 1.98 7.28 22.33 0.16 2.14 16 20 F -0.15 -5.74 17.26 44.97 0.78 -4.97 16 21 C -0.10 -2.57 10.01 22.35 0.22 -2.34 16 22 C -0.12 -2.94 9.97 22.33 0.22 -2.72 16 23 C 0.15 4.65 6.68 22.83 0.15 4.80 16 24 O -0.49 -14.48 12.07 -72.48 -0.87 -15.35 16 25 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 28 H 0.06 1.96 8.11 -2.39 -0.02 1.94 16 29 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.04 1.36 6.00 -2.38 -0.01 1.34 16 31 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.06 2.36 7.64 -2.39 -0.02 2.34 16 33 H 0.08 3.03 7.73 -2.39 -0.02 3.01 16 34 H 0.05 2.58 4.10 -2.39 -0.01 2.57 16 35 H 0.02 1.23 6.05 -2.38 -0.01 1.22 16 36 H 0.27 13.77 8.31 -92.71 -0.77 13.00 16 37 H 0.16 7.81 4.10 -2.91 -0.01 7.80 16 38 H 0.18 3.16 8.06 -2.91 -0.02 3.14 16 39 H 0.18 2.84 8.06 -2.90 -0.02 2.82 16 40 H 0.41 8.32 9.06 -74.06 -0.67 7.65 16 Total: -1.00 -63.94 333.12 5.05 -58.89 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: 0.41 Total: 23.68 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: 4.09 Total: -4.18 kcal Atomic # 7 Polarization: -73.88 SS G_CDS: -1.58 Total: -75.47 kcal Atomic # 8 Polarization: -40.94 SS G_CDS: -0.66 Total: -41.60 kcal Atomic # 9 Polarization: -5.74 SS G_CDS: 0.78 Total: -4.97 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Total: -63.94 5.05 -58.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128560662.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.449 kcal (2) G-P(sol) polarization free energy of solvation -63.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds