Wall clock time and date at job start Tue Mar 31 2020 06:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50698 * 109.47181 * 2 1 4 4 C 1.37973 * 120.07691 * 101.20980 * 3 2 1 5 5 C 1.38344 * 120.14951 * 180.02562 * 4 3 2 6 6 C 1.38383 * 120.29847 * 0.02562 * 5 4 3 7 7 C 1.37933 * 120.14562 * 359.97438 * 6 5 4 8 8 C 1.39587 * 120.07621 * 281.23158 * 3 2 1 9 9 C 1.47790 * 120.14794 * 359.97438 * 8 3 2 10 10 O 1.21566 * 119.99800 * 354.45659 * 9 8 3 11 11 N 1.34776 * 120.00200 * 174.45131 * 9 8 3 12 12 C 1.39131 * 119.99878 * 185.07105 * 11 9 8 13 13 C 1.39516 * 119.83528 * 324.16784 * 12 11 9 14 14 C 1.36363 * 120.16536 * 179.76408 * 13 12 11 15 15 C 1.40881 * 119.82500 * 0.53733 * 14 13 12 16 16 C 1.41140 * 120.15377 * 179.69961 * 15 14 13 17 17 H 1.08005 * 119.99524 * 213.09440 * 16 15 14 18 18 C 1.39912 * 120.00371 * 33.09484 * 16 15 14 19 19 N 1.30867 * 119.99649 * 6.52129 * 18 16 15 20 20 Si 1.86798 * 119.99839 * 186.52003 * 18 16 15 21 21 H 1.48496 * 109.46984 * 90.00393 * 20 18 16 22 22 H 1.48505 * 109.46890 * 209.99905 * 20 18 16 23 23 H 1.48501 * 109.47364 * 329.99686 * 20 18 16 24 24 C 1.40880 * 119.68353 * 359.71478 * 15 14 13 25 25 C 1.36359 * 119.82707 * 0.02562 * 24 15 14 26 26 H 1.08989 * 109.47178 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46680 * 300.00016 * 1 2 3 28 28 H 1.09002 * 109.47040 * 59.99675 * 1 2 3 29 29 H 1.09000 * 109.47055 * 240.00561 * 2 1 3 30 30 H 1.08994 * 109.47240 * 120.00087 * 2 1 3 31 31 H 1.08007 * 119.92296 * 0.02562 * 4 3 2 32 32 H 1.08002 * 119.84988 * 180.02562 * 5 4 3 33 33 H 1.07995 * 119.92553 * 180.27485 * 6 5 4 34 34 H 1.07997 * 120.06924 * 180.02562 * 7 6 5 35 35 H 0.96995 * 119.99650 * 5.06821 * 11 9 8 36 36 H 1.07993 * 119.91583 * 359.97438 * 13 12 11 37 37 H 1.07997 * 120.08081 * 180.23210 * 14 13 12 38 38 H 0.97002 * 119.99758 * 179.97438 * 19 18 16 39 39 H 1.08001 * 120.08528 * 179.97438 * 24 15 14 40 40 H 1.08000 * 119.91253 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.4817 1.9953 1.1712 5 6 2.9427 3.2997 1.1730 6 6 2.9561 4.0371 0.0021 7 6 2.5097 3.4749 -1.1757 8 6 2.0438 2.1587 -1.1848 9 6 1.5641 1.5499 -2.4431 10 8 1.2534 0.3749 -2.4700 11 7 1.4709 2.2973 -3.5608 12 6 0.9208 1.7537 -4.7173 13 6 1.1429 0.4116 -5.0271 14 6 0.6030 -0.1294 -6.1564 15 6 -0.1713 0.6735 -7.0169 16 6 -0.7281 0.1223 -8.1909 17 1 -0.8388 0.7335 -9.0745 18 6 -1.1368 -1.2157 -8.2100 19 7 -1.1222 -1.9200 -7.1071 20 14 -1.7031 -1.9965 -9.8097 21 1 -0.5385 -2.6011 -10.5048 22 1 -2.7073 -3.0508 -9.5175 23 1 -2.3140 -0.9583 -10.6782 24 6 -0.3869 2.0292 -6.7002 25 6 0.1550 2.5549 -5.5646 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 2.4735 1.4254 2.0886 32 1 3.2937 3.7445 2.0924 33 1 3.3214 5.0533 0.0095 34 1 2.5211 4.0513 -2.0889 35 1 1.7873 3.2142 -3.5587 36 1 1.7411 -0.2012 -4.3692 37 1 0.7728 -1.1694 -6.3930 38 1 -1.4059 -2.8475 -7.1203 39 1 -0.9791 2.6508 -7.3554 40 1 -0.0090 3.5941 -5.3207 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152978029.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:06 Heat of formation + Delta-G solvation = 7.856433 kcal Electronic energy + Delta-G solvation = -22604.850083 eV Core-core repulsion = 19348.887671 eV Total energy + Delta-G solvation = -3255.962412 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.38697 -38.59385 -37.08017 -34.83125 -33.66474 -32.89132 -31.26219 -29.52629 -29.42486 -28.74699 -25.31591 -23.89939 -23.30327 -21.59933 -21.32960 -20.50374 -19.62319 -17.65230 -17.27644 -16.35084 -15.87944 -15.34481 -15.11141 -14.89623 -14.62960 -13.95491 -13.80706 -13.66887 -13.23524 -13.03898 -12.79026 -12.59331 -12.21554 -12.07825 -11.77717 -11.62744 -11.61306 -11.44162 -11.16868 -11.01301 -10.80587 -10.65268 -10.50009 -9.89768 -9.81193 -9.34193 -9.04013 -8.98429 -8.73885 -8.67178 -7.52667 -6.91186 -6.64360 -4.30935 0.87193 1.27551 2.65565 3.03294 3.09692 3.11303 3.14163 3.30540 3.70509 3.95032 3.98910 4.68627 4.70969 4.76574 4.80401 4.99864 5.22507 5.39674 5.47321 5.63198 5.67623 5.69371 5.79775 5.98696 6.10098 6.13795 6.24805 6.31144 6.33116 6.39129 6.53907 6.68542 6.80893 6.86337 7.01489 7.04841 7.19160 7.29648 7.61461 7.68165 7.95947 8.08093 8.20541 8.32373 8.65125 8.77390 8.91978 9.01055 10.29955 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.028785 B = 0.003439 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.504163 B = 8140.142267 C = 8882.996121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.095 4.095 3 C -0.020 4.020 4 C -0.131 4.131 5 C -0.099 4.099 6 C -0.136 4.136 7 C -0.087 4.087 8 C -0.127 4.127 9 C 0.539 3.461 10 O -0.513 6.513 11 N -0.646 5.646 12 C 0.001 3.999 13 C -0.089 4.089 14 C -0.144 4.144 15 C 0.106 3.894 16 C -0.464 4.464 17 H 0.076 0.924 18 C 0.071 3.929 19 N -0.802 5.802 20 Si 0.912 3.088 21 H -0.269 1.269 22 H -0.278 1.278 23 H -0.264 1.264 24 C -0.207 4.207 25 C -0.109 4.109 26 H 0.056 0.944 27 H 0.041 0.959 28 H 0.063 0.937 29 H 0.108 0.892 30 H 0.058 0.942 31 H 0.126 0.874 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.393 0.607 36 H 0.108 0.892 37 H 0.120 0.880 38 H 0.279 0.721 39 H 0.096 0.904 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.598 7.917 13.232 16.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.132 4.132 3 C -0.021 4.021 4 C -0.149 4.149 5 C -0.117 4.117 6 C -0.154 4.154 7 C -0.106 4.106 8 C -0.130 4.130 9 C 0.327 3.673 10 O -0.391 6.391 11 N -0.289 5.289 12 C -0.091 4.091 13 C -0.109 4.109 14 C -0.164 4.164 15 C 0.104 3.896 16 C -0.495 4.495 17 H 0.094 0.906 18 C -0.145 4.145 19 N -0.428 5.428 20 Si 0.737 3.263 21 H -0.194 1.194 22 H -0.203 1.203 23 H -0.188 1.188 24 C -0.227 4.227 25 C -0.130 4.130 26 H 0.075 0.925 27 H 0.060 0.940 28 H 0.082 0.918 29 H 0.126 0.874 30 H 0.077 0.923 31 H 0.144 0.856 32 H 0.141 0.859 33 H 0.143 0.857 34 H 0.143 0.857 35 H 0.227 0.773 36 H 0.126 0.874 37 H 0.138 0.862 38 H 0.090 0.910 39 H 0.115 0.885 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.290 6.838 13.302 16.225 hybrid contribution -0.211 0.261 -0.571 0.662 sum 6.079 7.099 12.731 15.794 Atomic orbital electron populations 1.21593 0.94314 1.01822 1.01391 1.20840 0.96914 0.91761 1.03680 1.20114 0.94061 0.96438 0.91512 1.21056 1.00709 0.95552 0.97594 1.21285 0.98016 0.94286 0.98127 1.21035 1.01573 1.00196 0.92629 1.21328 0.96870 0.93907 0.98498 1.19976 1.04020 0.94829 0.94169 1.18236 0.79320 0.86756 0.82998 1.90721 1.48526 1.15226 1.84636 1.42900 1.60531 1.15506 1.10005 1.17219 1.07451 0.94627 0.89782 1.20598 1.00238 0.93212 0.96860 1.21045 0.99230 1.00521 0.95638 1.17696 0.88685 0.90630 0.92616 1.19503 1.36231 0.95331 0.98402 0.90559 1.25888 0.94089 0.97095 0.97439 1.69810 1.36287 1.09407 1.27328 0.86253 0.78971 0.79144 0.81931 1.19438 1.20344 1.18762 1.20648 1.06474 0.97077 0.98492 1.20083 0.98913 0.97357 0.96603 0.92516 0.94021 0.91781 0.87438 0.92316 0.85648 0.85894 0.85702 0.85709 0.77301 0.87398 0.86189 0.90974 0.88548 0.89199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.97 9.43 37.16 0.35 -1.62 16 2 C -0.10 -1.35 5.34 -27.88 -0.15 -1.50 16 3 C -0.02 -0.28 5.17 -104.22 -0.54 -0.82 16 4 C -0.13 -1.43 9.66 -39.64 -0.38 -1.82 16 5 C -0.10 -0.94 10.04 -39.49 -0.40 -1.34 16 6 C -0.14 -1.33 10.03 -39.64 -0.40 -1.73 16 7 C -0.09 -1.02 9.54 -39.18 -0.37 -1.39 16 8 C -0.13 -1.85 5.87 -104.97 -0.62 -2.47 16 9 C 0.54 9.78 7.18 -12.35 -0.09 9.69 16 10 O -0.51 -10.88 9.30 5.31 0.05 -10.83 16 11 N -0.65 -11.57 5.25 -10.61 -0.06 -11.63 16 12 C 0.00 0.03 6.30 -83.60 -0.53 -0.50 16 13 C -0.09 -2.20 8.61 -39.78 -0.34 -2.55 16 14 C -0.14 -3.85 8.57 -39.26 -0.34 -4.19 16 15 C 0.11 2.84 5.52 -106.80 -0.59 2.26 16 16 C -0.46 -12.38 9.03 -37.85 -0.34 -12.72 16 17 H 0.08 1.94 7.85 -52.48 -0.41 1.53 16 18 C 0.07 1.82 5.30 -17.34 -0.09 1.73 16 19 N -0.80 -21.41 10.92 55.55 0.61 -20.81 16 20 Si 0.91 19.05 29.56 -169.99 -5.03 14.03 16 21 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 22 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 23 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 24 C -0.21 -5.00 9.74 -39.26 -0.38 -5.39 16 25 C -0.11 -2.39 9.90 -39.78 -0.39 -2.79 16 26 H 0.06 0.80 8.14 -51.94 -0.42 0.37 16 27 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 1.13 6.54 -51.93 -0.34 0.79 16 29 H 0.11 1.80 5.86 -51.93 -0.30 1.50 16 30 H 0.06 0.69 7.99 -51.93 -0.41 0.27 16 31 H 0.13 1.10 8.03 -52.48 -0.42 0.68 16 32 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 33 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 34 H 0.13 1.20 6.43 -52.49 -0.34 0.86 16 35 H 0.39 5.55 6.87 -40.82 -0.28 5.27 16 36 H 0.11 2.66 6.24 -52.49 -0.33 2.34 16 37 H 0.12 3.34 6.40 -52.49 -0.34 3.01 16 38 H 0.28 6.84 8.30 -40.82 -0.34 6.51 16 39 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 40 H 0.09 1.67 8.06 -52.49 -0.42 1.24 16 LS Contribution 330.59 15.07 4.98 4.98 Total: -1.00 -29.86 330.59 -9.89 -39.75 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -4.84 Total: 11.62 kcal Atomic # 6 Polarization: -21.52 SS G_CDS: -5.60 Total: -27.11 kcal Atomic # 7 Polarization: -32.98 SS G_CDS: 0.55 Total: -32.43 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.05 Total: -10.83 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.03 Total: 14.03 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.86 -9.89 -39.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152978029.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.605 kcal (2) G-P(sol) polarization free energy of solvation -29.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds