Wall clock time and date at job start Tue Mar 31 2020 06:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50698 * 109.47181 * 2 1 4 4 C 1.37973 * 120.07691 * 101.20980 * 3 2 1 5 5 C 1.38344 * 120.14951 * 180.02562 * 4 3 2 6 6 C 1.38383 * 120.29847 * 0.02562 * 5 4 3 7 7 C 1.37933 * 120.14562 * 359.97438 * 6 5 4 8 8 C 1.39587 * 120.07621 * 281.23158 * 3 2 1 9 9 C 1.47790 * 120.14794 * 359.97438 * 8 3 2 10 10 O 1.21566 * 119.99800 * 354.45659 * 9 8 3 11 11 N 1.34776 * 120.00200 * 174.45131 * 9 8 3 12 12 C 1.39131 * 119.99878 * 185.07105 * 11 9 8 13 13 C 1.39516 * 119.83528 * 324.16784 * 12 11 9 14 14 C 1.36363 * 120.16536 * 179.76408 * 13 12 11 15 15 C 1.40881 * 119.82500 * 0.53733 * 14 13 12 16 16 C 1.41140 * 120.15377 * 179.69961 * 15 14 13 17 17 H 1.08005 * 119.99524 * 213.09440 * 16 15 14 18 18 C 1.39912 * 120.00371 * 33.09484 * 16 15 14 19 19 N 1.30867 * 119.99649 * 6.52129 * 18 16 15 20 20 Si 1.86798 * 119.99839 * 186.52003 * 18 16 15 21 21 H 1.48496 * 109.46984 * 90.00393 * 20 18 16 22 22 H 1.48505 * 109.46890 * 209.99905 * 20 18 16 23 23 H 1.48501 * 109.47364 * 329.99686 * 20 18 16 24 24 C 1.40880 * 119.68353 * 359.71478 * 15 14 13 25 25 C 1.36359 * 119.82707 * 0.02562 * 24 15 14 26 26 H 1.08989 * 109.47178 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46680 * 300.00016 * 1 2 3 28 28 H 1.09002 * 109.47040 * 59.99675 * 1 2 3 29 29 H 1.09000 * 109.47055 * 240.00561 * 2 1 3 30 30 H 1.08994 * 109.47240 * 120.00087 * 2 1 3 31 31 H 1.08007 * 119.92296 * 0.02562 * 4 3 2 32 32 H 1.08002 * 119.84988 * 180.02562 * 5 4 3 33 33 H 1.07995 * 119.92553 * 180.27485 * 6 5 4 34 34 H 1.07997 * 120.06924 * 180.02562 * 7 6 5 35 35 H 0.96995 * 119.99650 * 5.06821 * 11 9 8 36 36 H 1.07993 * 119.91583 * 359.97438 * 13 12 11 37 37 H 1.07997 * 120.08081 * 180.23210 * 14 13 12 38 38 H 0.97002 * 119.99758 * 179.97438 * 19 18 16 39 39 H 1.08001 * 120.08528 * 179.97438 * 24 15 14 40 40 H 1.08000 * 119.91253 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.4817 1.9953 1.1712 5 6 2.9427 3.2997 1.1730 6 6 2.9561 4.0371 0.0021 7 6 2.5097 3.4749 -1.1757 8 6 2.0438 2.1587 -1.1848 9 6 1.5641 1.5499 -2.4431 10 8 1.2534 0.3749 -2.4700 11 7 1.4709 2.2973 -3.5608 12 6 0.9208 1.7537 -4.7173 13 6 1.1429 0.4116 -5.0271 14 6 0.6030 -0.1294 -6.1564 15 6 -0.1713 0.6735 -7.0169 16 6 -0.7281 0.1223 -8.1909 17 1 -0.8388 0.7335 -9.0745 18 6 -1.1368 -1.2157 -8.2100 19 7 -1.1222 -1.9200 -7.1071 20 14 -1.7031 -1.9965 -9.8097 21 1 -0.5385 -2.6011 -10.5048 22 1 -2.7073 -3.0508 -9.5175 23 1 -2.3140 -0.9583 -10.6782 24 6 -0.3869 2.0292 -6.7002 25 6 0.1550 2.5549 -5.5646 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 2.4735 1.4254 2.0886 32 1 3.2937 3.7445 2.0924 33 1 3.3214 5.0533 0.0095 34 1 2.5211 4.0513 -2.0889 35 1 1.7873 3.2142 -3.5587 36 1 1.7411 -0.2012 -4.3692 37 1 0.7728 -1.1694 -6.3930 38 1 -1.4059 -2.8475 -7.1203 39 1 -0.9791 2.6508 -7.3554 40 1 -0.0090 3.5941 -5.3207 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152978029.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:05 Heat of formation + Delta-G solvation = -7.668345 kcal Electronic energy + Delta-G solvation = -22605.523288 eV Core-core repulsion = 19348.887671 eV Total energy + Delta-G solvation = -3256.635617 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.67450 -39.92981 -38.70375 -36.39297 -35.10340 -34.41137 -32.38782 -31.41583 -30.66894 -30.27152 -27.01992 -25.18248 -24.30623 -23.26050 -22.96414 -21.75225 -21.12141 -19.23922 -18.91850 -17.88325 -17.10899 -16.74881 -16.30513 -16.16671 -16.00603 -15.73806 -15.02234 -14.85678 -14.64690 -14.48775 -14.16728 -13.96270 -13.88758 -13.61783 -13.33922 -13.12856 -12.84718 -12.70157 -12.65199 -12.49280 -12.28859 -12.02756 -11.79688 -11.69508 -11.62138 -11.15285 -10.61729 -10.33342 -9.93110 -9.67166 -9.46360 -8.77733 -8.54768 -6.31281 -0.11129 0.43153 0.87299 1.12097 1.38145 1.47110 1.52691 1.98311 2.22255 2.32017 2.78046 2.93043 3.67757 3.76775 3.81079 3.90377 4.15052 4.33990 4.41205 4.46941 4.50126 4.55105 4.57115 4.60678 4.91139 4.94009 4.96776 5.09546 5.11439 5.15755 5.24175 5.30164 5.36218 5.39635 5.44978 5.52490 5.66614 5.70069 5.86655 6.00325 6.07855 6.11319 6.34270 6.68293 6.71091 6.94524 7.00169 7.39229 8.41431 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.028785 B = 0.003439 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.504163 B = 8140.142267 C = 8882.996121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.093 4.093 3 C -0.040 4.040 4 C -0.132 4.132 5 C -0.086 4.086 6 C -0.131 4.131 7 C -0.088 4.088 8 C -0.155 4.155 9 C 0.535 3.465 10 O -0.553 6.553 11 N -0.641 5.641 12 C 0.018 3.982 13 C -0.103 4.103 14 C -0.166 4.166 15 C 0.073 3.927 16 C -0.498 4.498 17 H 0.081 0.919 18 C 0.025 3.975 19 N -0.843 5.843 20 Si 0.988 3.012 21 H -0.263 1.263 22 H -0.272 1.272 23 H -0.254 1.254 24 C -0.213 4.213 25 C -0.105 4.105 26 H 0.053 0.947 27 H 0.063 0.937 28 H 0.027 0.973 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.149 0.851 32 H 0.161 0.839 33 H 0.160 0.840 34 H 0.142 0.858 35 H 0.414 0.586 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.283 0.717 39 H 0.112 0.888 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.359 10.884 15.211 20.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.130 4.130 3 C -0.041 4.041 4 C -0.150 4.150 5 C -0.104 4.104 6 C -0.149 4.149 7 C -0.107 4.107 8 C -0.158 4.158 9 C 0.325 3.675 10 O -0.432 6.432 11 N -0.287 5.287 12 C -0.076 4.076 13 C -0.123 4.123 14 C -0.187 4.187 15 C 0.070 3.930 16 C -0.529 4.529 17 H 0.099 0.901 18 C -0.187 4.187 19 N -0.471 5.471 20 Si 0.809 3.191 21 H -0.188 1.188 22 H -0.197 1.197 23 H -0.178 1.178 24 C -0.233 4.233 25 C -0.125 4.125 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.046 0.954 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.167 0.833 32 H 0.178 0.822 33 H 0.178 0.822 34 H 0.160 0.840 35 H 0.252 0.748 36 H 0.116 0.884 37 H 0.113 0.887 38 H 0.094 0.906 39 H 0.130 0.870 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 7.076 9.855 15.303 19.529 hybrid contribution -0.334 -0.526 -0.930 1.119 sum 6.741 9.330 14.373 18.414 Atomic orbital electron populations 1.21521 0.95092 1.01382 1.00544 1.20729 0.96275 0.92859 1.03121 1.20186 0.95348 0.95994 0.92526 1.21336 0.99934 0.96565 0.97189 1.21781 0.95676 0.93363 0.99558 1.21477 1.00037 1.01656 0.91688 1.21574 0.96176 0.92568 1.00363 1.19777 1.07005 0.96583 0.92439 1.18965 0.78118 0.86288 0.84105 1.90722 1.49971 1.17154 1.85388 1.42798 1.60603 1.16529 1.08745 1.17296 1.05957 0.93615 0.90694 1.20618 1.00622 0.94798 0.96302 1.20914 1.00949 0.99732 0.97073 1.18023 0.89528 0.92105 0.93301 1.19784 1.37733 0.96574 0.98784 0.90132 1.26826 0.93673 0.97212 1.00990 1.69920 1.37618 1.09873 1.29665 0.85111 0.78598 0.78182 0.77203 1.18774 1.19713 1.17796 1.20918 1.06564 0.96243 0.99533 1.20439 0.97432 0.99309 0.95307 0.92826 0.91773 0.95415 0.91015 0.89747 0.83342 0.82170 0.82218 0.83984 0.74807 0.88429 0.88738 0.90638 0.86972 0.84789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.87 9.43 71.98 0.68 -3.19 16 2 C -0.09 -2.67 5.34 29.85 0.16 -2.51 16 3 C -0.04 -1.03 5.17 -19.60 -0.10 -1.13 16 4 C -0.13 -2.43 9.66 22.23 0.21 -2.21 16 5 C -0.09 -1.19 10.04 22.33 0.22 -0.97 16 6 C -0.13 -1.91 10.03 22.23 0.22 -1.68 16 7 C -0.09 -1.78 9.54 22.53 0.21 -1.56 16 8 C -0.15 -4.38 5.87 -20.09 -0.12 -4.50 16 9 C 0.53 19.80 7.18 86.77 0.62 20.43 16 10 O -0.55 -24.90 9.30 -3.92 -0.04 -24.93 16 11 N -0.64 -22.66 5.25 -305.74 -1.61 -24.27 16 12 C 0.02 0.80 6.30 38.60 0.24 1.04 16 13 C -0.10 -5.39 8.61 22.14 0.19 -5.20 16 14 C -0.17 -9.50 8.57 22.48 0.19 -9.31 16 15 C 0.07 4.07 5.52 -21.27 -0.12 3.95 16 16 C -0.50 -27.64 9.03 23.39 0.21 -27.42 16 17 H 0.08 4.22 7.85 -2.91 -0.02 4.19 16 18 C 0.03 1.33 5.30 85.24 0.45 1.79 16 19 N -0.84 -47.58 10.92 21.82 0.24 -47.34 16 20 Si 0.99 40.11 29.56 68.60 2.03 42.14 16 21 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 22 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 23 H -0.25 -9.84 7.11 99.48 0.71 -9.13 16 24 C -0.21 -10.35 9.74 22.48 0.22 -10.13 16 25 C -0.10 -4.48 9.90 22.14 0.22 -4.26 16 26 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 28 H 0.03 1.01 6.54 -2.39 -0.02 1.00 16 29 H 0.07 2.58 5.86 -2.39 -0.01 2.57 16 30 H 0.08 1.90 7.99 -2.39 -0.02 1.88 16 31 H 0.15 1.98 8.03 -2.91 -0.02 1.96 16 32 H 0.16 1.09 8.06 -2.91 -0.02 1.07 16 33 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 34 H 0.14 2.23 6.43 -2.91 -0.02 2.21 16 35 H 0.41 10.85 6.87 -92.71 -0.64 10.22 16 36 H 0.10 5.21 6.24 -2.91 -0.02 5.19 16 37 H 0.09 5.75 6.40 -2.91 -0.02 5.73 16 38 H 0.28 14.64 8.30 -92.71 -0.77 13.87 16 39 H 0.11 5.00 8.06 -2.91 -0.02 4.97 16 40 H 0.13 4.51 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -71.05 330.59 4.79 -66.26 By element: Atomic # 1 Polarization: 34.59 SS G_CDS: 0.43 Total: 35.02 kcal Atomic # 6 Polarization: -50.61 SS G_CDS: 3.73 Total: -46.88 kcal Atomic # 7 Polarization: -70.24 SS G_CDS: -1.37 Total: -71.61 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.04 Total: -24.93 kcal Atomic # 14 Polarization: 40.11 SS G_CDS: 2.03 Total: 42.14 kcal Total: -71.05 4.79 -66.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152978029.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.592 kcal (2) G-P(sol) polarization free energy of solvation -71.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds