Wall clock time and date at job start Tue Mar 31 2020 06:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 109.47173 * 2 1 4 4 C 1.34777 * 119.99932 * 304.44893 * 3 2 1 5 5 O 1.21691 * 120.00357 * 354.51148 * 4 3 2 6 6 C 1.46382 * 120.00100 * 174.52033 * 4 3 2 7 7 H 1.07993 * 119.99440 * 5.10421 * 6 4 3 8 8 C 1.40048 * 119.99829 * 185.10836 * 6 4 3 9 9 N 1.30669 * 120.00247 * 5.11076 * 8 6 4 10 10 Si 1.86796 * 119.99549 * 185.11354 * 8 6 4 11 11 H 1.48493 * 109.47564 * 94.99904 * 10 8 6 12 12 H 1.48502 * 109.46753 * 214.99796 * 10 8 6 13 13 H 1.48503 * 109.47463 * 334.99285 * 10 8 6 14 14 C 1.50693 * 109.47093 * 120.00110 * 2 1 3 15 15 C 1.38237 * 120.00047 * 84.68333 * 14 2 1 16 16 C 1.38239 * 119.99943 * 180.32139 * 15 14 2 17 17 C 1.38234 * 120.00133 * 359.95674 * 16 15 14 18 18 C 1.38240 * 119.99689 * 0.02562 * 17 16 15 19 19 C 1.38233 * 120.00194 * 359.97438 * 18 17 16 20 20 C 1.50700 * 109.47011 * 240.00194 * 2 1 3 21 21 C 1.38234 * 120.00054 * 154.20590 * 20 2 1 22 22 C 1.38241 * 119.99849 * 179.76756 * 21 20 2 23 23 C 1.38237 * 119.99898 * 0.49803 * 22 21 20 24 24 C 1.38230 * 120.00033 * 359.75275 * 23 22 21 25 25 C 1.38237 * 119.99828 * 334.47150 * 20 2 1 26 26 H 1.08994 * 109.47132 * 300.00051 * 1 2 3 27 27 H 1.08999 * 109.47368 * 59.99842 * 1 2 3 28 28 H 1.09003 * 109.47010 * 179.97438 * 1 2 3 29 29 H 0.97001 * 120.00236 * 124.44556 * 3 2 1 30 30 H 0.96996 * 120.00105 * 180.02562 * 9 8 6 31 31 H 1.07999 * 119.99917 * 0.28402 * 15 14 2 32 32 H 1.07995 * 119.99842 * 179.97438 * 16 15 14 33 33 H 1.07994 * 120.00316 * 179.97438 * 17 16 15 34 34 H 1.08002 * 119.99284 * 179.97438 * 18 17 16 35 35 H 1.08000 * 119.99904 * 179.97438 * 19 18 17 36 36 H 1.07998 * 119.99648 * 359.97438 * 21 20 2 37 37 H 1.07993 * 119.99705 * 180.22650 * 22 21 20 38 38 H 1.08001 * 119.99528 * 179.72712 * 23 22 21 39 39 H 1.07999 * 119.99901 * 179.97438 * 24 23 22 40 40 H 1.07996 * 120.00238 * 0.02562 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.6205 2.2366 -0.9625 5 8 0.9367 1.8375 -1.8866 6 6 2.0111 3.6458 -0.8965 7 1 2.6850 3.9836 -0.1232 8 6 1.5107 4.5559 -1.8360 9 7 0.6189 4.1694 -2.7094 10 14 2.1183 6.3223 -1.8406 11 1 3.2251 6.4626 -2.8206 12 1 1.0040 7.2279 -2.2194 13 1 2.6086 6.6807 -0.4855 14 6 2.0323 -0.7104 1.2304 15 6 2.1581 -2.0870 1.2307 16 6 2.6126 -2.7393 2.3617 17 6 2.9421 -2.0148 3.4919 18 6 2.8167 -0.6381 3.4914 19 6 2.3622 0.0141 2.3605 20 6 2.0323 -0.7104 -1.2305 21 6 3.2789 -0.4054 -1.7442 22 6 3.7417 -1.0605 -2.8701 23 6 2.9535 -2.0132 -3.4883 24 6 1.7048 -2.3144 -2.9777 25 6 1.2442 -1.6630 -1.8487 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 2.6280 1.6801 0.6927 30 1 0.2727 4.7996 -3.3603 31 1 1.9008 -2.6530 0.3477 32 1 2.7105 -3.8148 2.3621 33 1 3.2968 -2.5244 4.3756 34 1 3.0737 -0.0723 4.3747 35 1 2.2638 1.0896 2.3603 36 1 3.8927 0.3422 -1.2638 37 1 4.7171 -0.8249 -3.2693 38 1 3.3133 -2.5218 -4.3706 39 1 1.0889 -3.0584 -3.4610 40 1 0.2683 -1.8979 -1.4502 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153761314.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:50 Heat of formation + Delta-G solvation = 21.538710 kcal Electronic energy + Delta-G solvation = -23718.368691 eV Core-core repulsion = 20462.999587 eV Total energy + Delta-G solvation = -3255.369104 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.16414 -38.29476 -37.12155 -34.57719 -32.41831 -31.39833 -30.48598 -30.18652 -29.91109 -28.18975 -26.11604 -23.85941 -22.57898 -21.76050 -21.66899 -20.37359 -18.71335 -17.75117 -16.58916 -16.36263 -15.32400 -15.18779 -14.90404 -14.44459 -14.27462 -14.11233 -13.51522 -13.37857 -13.25148 -12.93255 -12.82250 -12.65433 -12.06185 -12.02236 -11.79512 -11.41899 -11.29415 -11.15449 -11.02833 -10.94682 -10.75323 -10.46347 -10.37947 -10.20121 -10.11477 -8.85487 -8.76263 -8.58038 -8.33079 -8.17913 -7.56510 -7.42745 -6.18847 -4.62767 1.51638 1.56030 1.94110 1.98776 3.13501 3.21185 3.23818 3.94676 4.10113 4.32021 4.58451 4.73804 4.99590 5.07633 5.13586 5.30417 5.33923 5.42025 5.48180 5.61417 5.67577 5.76061 5.77927 6.01168 6.02187 6.11167 6.15163 6.18502 6.29614 6.43692 6.54675 6.59182 6.63422 6.64836 6.81305 7.00749 7.05158 7.07486 7.16763 7.24682 7.43700 7.56770 7.89434 8.09673 8.32669 9.03516 9.52772 10.60646 10.80073 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.013908 B = 0.005941 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.698471 B = 4711.604163 C = 5991.046488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.261 3.739 3 N -0.758 5.758 4 C 0.560 3.440 5 O -0.563 6.563 6 C -0.547 4.547 7 H 0.065 0.935 8 C 0.091 3.909 9 N -0.767 5.767 10 Si 0.904 3.096 11 H -0.273 1.273 12 H -0.280 1.280 13 H -0.265 1.265 14 C -0.066 4.066 15 C -0.109 4.109 16 C -0.122 4.122 17 C -0.130 4.130 18 C -0.120 4.120 19 C -0.113 4.113 20 C -0.047 4.047 21 C -0.089 4.089 22 C -0.124 4.124 23 C -0.132 4.132 24 C -0.126 4.126 25 C -0.115 4.115 26 H 0.051 0.949 27 H 0.095 0.905 28 H 0.048 0.952 29 H 0.380 0.620 30 H 0.268 0.732 31 H 0.123 0.877 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.128 0.872 36 H 0.117 0.883 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.189 -11.639 7.574 14.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.173 3.827 3 N -0.415 5.415 4 C 0.363 3.637 5 O -0.445 6.445 6 C -0.584 4.584 7 H 0.084 0.916 8 C -0.129 4.129 9 N -0.395 5.395 10 Si 0.729 3.271 11 H -0.199 1.199 12 H -0.205 1.205 13 H -0.190 1.190 14 C -0.067 4.067 15 C -0.128 4.128 16 C -0.140 4.140 17 C -0.148 4.148 18 C -0.138 4.138 19 C -0.131 4.131 20 C -0.048 4.048 21 C -0.107 4.107 22 C -0.142 4.142 23 C -0.150 4.150 24 C -0.145 4.145 25 C -0.134 4.134 26 H 0.070 0.930 27 H 0.114 0.886 28 H 0.067 0.933 29 H 0.214 0.786 30 H 0.078 0.922 31 H 0.141 0.859 32 H 0.136 0.864 33 H 0.134 0.866 34 H 0.137 0.863 35 H 0.146 0.854 36 H 0.135 0.865 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.527 -11.850 6.736 14.079 hybrid contribution 0.626 1.151 0.250 1.334 sum 4.154 -10.699 6.985 13.435 Atomic orbital electron populations 1.22279 0.93678 1.00811 1.04419 1.17574 0.93717 0.83451 0.87944 1.46496 1.53303 1.08452 1.33237 1.18128 0.79753 0.85563 0.80208 1.90580 1.41638 1.78052 1.34231 1.20865 1.30712 0.91653 1.15166 0.91644 1.25637 0.93347 0.99742 0.94149 1.69990 1.21330 1.34944 1.13253 0.86424 0.78928 0.82614 0.79182 1.19867 1.20516 1.18959 1.20001 0.97918 0.93835 0.94939 1.21085 0.99342 0.93940 0.98391 1.21074 0.99979 0.99557 0.93376 1.21081 1.01220 0.94323 0.98173 1.21101 1.00041 0.94557 0.98082 1.21091 0.98978 1.00466 0.92592 1.19978 0.93796 0.94653 0.96419 1.20896 0.95876 0.98015 0.95921 1.21023 0.99694 0.97102 0.96367 1.20955 0.95152 0.99078 0.99851 1.20961 0.96167 1.00540 0.96786 1.21014 0.99170 0.96975 0.96209 0.93014 0.88588 0.93269 0.78638 0.92173 0.85865 0.86408 0.86560 0.86253 0.85425 0.86485 0.86903 0.87036 0.86866 0.86341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 7.48 37.16 0.28 -2.73 16 2 C 0.26 4.97 0.74 -134.13 -0.10 4.87 16 3 N -0.76 -16.33 3.93 -51.17 -0.20 -16.53 16 4 C 0.56 15.08 6.83 -12.98 -0.09 14.99 16 5 O -0.56 -17.03 12.27 5.20 0.06 -16.97 16 6 C -0.55 -15.03 9.54 -35.63 -0.34 -15.37 16 7 H 0.07 1.66 7.85 -52.49 -0.41 1.25 16 8 C 0.09 2.50 5.49 -17.37 -0.10 2.40 16 9 N -0.77 -22.56 11.87 55.55 0.66 -21.90 16 10 Si 0.90 20.03 29.56 -169.99 -5.03 15.00 16 11 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 12 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 13 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 14 C -0.07 -1.07 4.79 -104.63 -0.50 -1.57 16 15 C -0.11 -1.58 9.15 -39.58 -0.36 -1.94 16 16 C -0.12 -1.51 10.05 -39.58 -0.40 -1.90 16 17 C -0.13 -1.52 10.05 -39.58 -0.40 -1.92 16 18 C -0.12 -1.50 10.05 -39.58 -0.40 -1.89 16 19 C -0.11 -1.67 9.00 -39.58 -0.36 -2.02 16 20 C -0.05 -0.91 2.73 -104.62 -0.29 -1.20 16 21 C -0.09 -1.75 9.02 -39.58 -0.36 -2.11 16 22 C -0.12 -2.17 10.05 -39.58 -0.40 -2.57 16 23 C -0.13 -2.13 10.05 -39.58 -0.40 -2.53 16 24 C -0.13 -2.05 10.05 -39.58 -0.40 -2.45 16 25 C -0.12 -2.05 7.89 -39.58 -0.31 -2.36 16 26 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.10 2.26 6.04 -51.93 -0.31 1.95 16 28 H 0.05 0.81 6.56 -51.93 -0.34 0.47 16 29 H 0.38 7.38 6.50 -40.82 -0.27 7.11 16 30 H 0.27 7.21 8.29 -40.82 -0.34 6.87 16 31 H 0.12 1.75 6.24 -52.49 -0.33 1.43 16 32 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 33 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 35 H 0.13 1.88 6.48 -52.49 -0.34 1.53 16 36 H 0.12 2.36 7.53 -52.49 -0.40 1.96 16 37 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 38 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 39 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 40 H 0.12 1.92 6.06 -52.49 -0.32 1.60 16 LS Contribution 329.96 15.07 4.97 4.97 Total: -1.00 -32.68 329.96 -9.24 -41.92 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: -4.81 Total: 13.80 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: -4.91 Total: -20.31 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: 0.46 Total: -38.43 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: 0.06 Total: -16.97 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.03 Total: 15.00 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.68 -9.24 -41.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153761314.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.461 kcal (2) G-P(sol) polarization free energy of solvation -32.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds