Wall clock time and date at job start Tue Mar 31 2020 06:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 109.47173 * 2 1 4 4 C 1.34777 * 119.99932 * 304.44893 * 3 2 1 5 5 O 1.21691 * 120.00357 * 354.51148 * 4 3 2 6 6 C 1.46382 * 120.00100 * 174.52033 * 4 3 2 7 7 H 1.07993 * 119.99440 * 5.10421 * 6 4 3 8 8 C 1.40048 * 119.99829 * 185.10836 * 6 4 3 9 9 N 1.30669 * 120.00247 * 5.11076 * 8 6 4 10 10 Si 1.86796 * 119.99549 * 185.11354 * 8 6 4 11 11 H 1.48493 * 109.47564 * 94.99904 * 10 8 6 12 12 H 1.48502 * 109.46753 * 214.99796 * 10 8 6 13 13 H 1.48503 * 109.47463 * 334.99285 * 10 8 6 14 14 C 1.50693 * 109.47093 * 120.00110 * 2 1 3 15 15 C 1.38237 * 120.00047 * 84.68333 * 14 2 1 16 16 C 1.38239 * 119.99943 * 180.32139 * 15 14 2 17 17 C 1.38234 * 120.00133 * 359.95674 * 16 15 14 18 18 C 1.38240 * 119.99689 * 0.02562 * 17 16 15 19 19 C 1.38233 * 120.00194 * 359.97438 * 18 17 16 20 20 C 1.50700 * 109.47011 * 240.00194 * 2 1 3 21 21 C 1.38234 * 120.00054 * 154.20590 * 20 2 1 22 22 C 1.38241 * 119.99849 * 179.76756 * 21 20 2 23 23 C 1.38237 * 119.99898 * 0.49803 * 22 21 20 24 24 C 1.38230 * 120.00033 * 359.75275 * 23 22 21 25 25 C 1.38237 * 119.99828 * 334.47150 * 20 2 1 26 26 H 1.08994 * 109.47132 * 300.00051 * 1 2 3 27 27 H 1.08999 * 109.47368 * 59.99842 * 1 2 3 28 28 H 1.09003 * 109.47010 * 179.97438 * 1 2 3 29 29 H 0.97001 * 120.00236 * 124.44556 * 3 2 1 30 30 H 0.96996 * 120.00105 * 180.02562 * 9 8 6 31 31 H 1.07999 * 119.99917 * 0.28402 * 15 14 2 32 32 H 1.07995 * 119.99842 * 179.97438 * 16 15 14 33 33 H 1.07994 * 120.00316 * 179.97438 * 17 16 15 34 34 H 1.08002 * 119.99284 * 179.97438 * 18 17 16 35 35 H 1.08000 * 119.99904 * 179.97438 * 19 18 17 36 36 H 1.07998 * 119.99648 * 359.97438 * 21 20 2 37 37 H 1.07993 * 119.99705 * 180.22650 * 22 21 20 38 38 H 1.08001 * 119.99528 * 179.72712 * 23 22 21 39 39 H 1.07999 * 119.99901 * 179.97438 * 24 23 22 40 40 H 1.07996 * 120.00238 * 0.02562 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.6205 2.2366 -0.9625 5 8 0.9367 1.8375 -1.8866 6 6 2.0111 3.6458 -0.8965 7 1 2.6850 3.9836 -0.1232 8 6 1.5107 4.5559 -1.8360 9 7 0.6189 4.1694 -2.7094 10 14 2.1183 6.3223 -1.8406 11 1 3.2251 6.4626 -2.8206 12 1 1.0040 7.2279 -2.2194 13 1 2.6086 6.6807 -0.4855 14 6 2.0323 -0.7104 1.2304 15 6 2.1581 -2.0870 1.2307 16 6 2.6126 -2.7393 2.3617 17 6 2.9421 -2.0148 3.4919 18 6 2.8167 -0.6381 3.4914 19 6 2.3622 0.0141 2.3605 20 6 2.0323 -0.7104 -1.2305 21 6 3.2789 -0.4054 -1.7442 22 6 3.7417 -1.0605 -2.8701 23 6 2.9535 -2.0132 -3.4883 24 6 1.7048 -2.3144 -2.9777 25 6 1.2442 -1.6630 -1.8487 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 2.6280 1.6801 0.6927 30 1 0.2727 4.7996 -3.3603 31 1 1.9008 -2.6530 0.3477 32 1 2.7105 -3.8148 2.3621 33 1 3.2968 -2.5244 4.3756 34 1 3.0737 -0.0723 4.3747 35 1 2.2638 1.0896 2.3603 36 1 3.8927 0.3422 -1.2638 37 1 4.7171 -0.8249 -3.2693 38 1 3.3133 -2.5218 -4.3706 39 1 1.0889 -3.0584 -3.4610 40 1 0.2683 -1.8979 -1.4502 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153761314.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:49 Heat of formation + Delta-G solvation = 3.028867 kcal Electronic energy + Delta-G solvation = -23719.171338 eV Core-core repulsion = 20462.999587 eV Total energy + Delta-G solvation = -3256.171751 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.54073 -39.48059 -38.90458 -36.21118 -34.50088 -32.93248 -31.71520 -31.56168 -31.10863 -29.67186 -28.15237 -25.28956 -23.77413 -23.06828 -22.88949 -22.03775 -20.28603 -19.47391 -17.98977 -17.83299 -17.20733 -16.55047 -16.19912 -15.83512 -15.73130 -15.42094 -14.92556 -14.85665 -14.60158 -14.36990 -14.30993 -14.12481 -13.76493 -13.36640 -13.15428 -13.01618 -12.98198 -12.75824 -12.69048 -12.50468 -12.17580 -12.02767 -11.86560 -11.75215 -11.50995 -10.90358 -9.84738 -9.77439 -9.73081 -9.69982 -9.39349 -9.28593 -8.25268 -6.79469 0.44430 0.51317 0.59343 0.61265 1.38295 1.39351 1.53913 2.24166 2.53273 2.87630 2.93563 3.14395 3.65361 3.74983 3.90748 4.06816 4.14401 4.20272 4.23986 4.29559 4.34224 4.42842 4.61359 4.66209 4.71632 4.75203 4.84352 4.90478 5.06958 5.16555 5.21944 5.22171 5.33140 5.39319 5.60856 5.62418 5.64244 5.66434 5.72461 5.80964 5.92363 6.13590 6.22183 6.26849 6.38479 6.91854 7.60354 8.56570 8.75088 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.013908 B = 0.005941 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.698471 B = 4711.604163 C = 5991.046488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.259 3.741 3 N -0.747 5.747 4 C 0.552 3.448 5 O -0.603 6.603 6 C -0.578 4.578 7 H 0.079 0.921 8 C 0.036 3.964 9 N -0.818 5.818 10 Si 0.988 3.012 11 H -0.267 1.267 12 H -0.273 1.273 13 H -0.250 1.250 14 C -0.085 4.085 15 C -0.119 4.119 16 C -0.119 4.119 17 C -0.122 4.122 18 C -0.118 4.118 19 C -0.130 4.130 20 C -0.062 4.062 21 C -0.120 4.120 22 C -0.133 4.133 23 C -0.133 4.133 24 C -0.125 4.125 25 C -0.131 4.131 26 H 0.047 0.953 27 H 0.050 0.950 28 H 0.076 0.924 29 H 0.388 0.612 30 H 0.272 0.728 31 H 0.121 0.879 32 H 0.147 0.853 33 H 0.152 0.848 34 H 0.145 0.855 35 H 0.118 0.882 36 H 0.098 0.902 37 H 0.131 0.869 38 H 0.146 0.854 39 H 0.147 0.853 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.452 -12.909 8.873 16.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.172 3.828 3 N -0.402 5.402 4 C 0.355 3.645 5 O -0.488 6.488 6 C -0.615 4.615 7 H 0.097 0.903 8 C -0.179 4.179 9 N -0.448 5.448 10 Si 0.808 3.192 11 H -0.192 1.192 12 H -0.198 1.198 13 H -0.174 1.174 14 C -0.086 4.086 15 C -0.137 4.137 16 C -0.137 4.137 17 C -0.140 4.140 18 C -0.136 4.136 19 C -0.149 4.149 20 C -0.063 4.063 21 C -0.139 4.139 22 C -0.151 4.151 23 C -0.151 4.151 24 C -0.143 4.143 25 C -0.149 4.149 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.094 0.906 29 H 0.223 0.777 30 H 0.082 0.918 31 H 0.139 0.861 32 H 0.165 0.835 33 H 0.169 0.831 34 H 0.163 0.837 35 H 0.136 0.864 36 H 0.116 0.884 37 H 0.149 0.851 38 H 0.164 0.836 39 H 0.164 0.836 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.812 -13.147 8.083 16.165 hybrid contribution 0.247 1.413 -0.095 1.437 sum 5.058 -11.734 7.988 15.069 Atomic orbital electron populations 1.22141 0.94601 1.01739 1.01827 1.17665 0.93073 0.82060 0.89967 1.46156 1.52633 1.09458 1.31996 1.18304 0.79309 0.86345 0.80531 1.90543 1.43268 1.78978 1.35983 1.21394 1.31371 0.92605 1.16104 0.90325 1.26769 0.92957 1.05005 0.93167 1.70149 1.23083 1.37132 1.14442 0.85149 0.78379 0.75782 0.79868 1.19220 1.19762 1.17371 1.19783 1.00157 0.94612 0.94008 1.21143 1.00003 0.93159 0.99409 1.21425 0.98578 1.01099 0.92580 1.21513 0.99470 0.93954 0.99027 1.21405 0.98889 0.95397 0.97892 1.21130 1.00208 1.00179 0.93364 1.20060 0.94047 0.95412 0.96778 1.20936 0.96431 0.98969 0.97522 1.21325 1.00838 0.97225 0.95752 1.21367 0.94828 0.98377 1.00507 1.21396 0.96544 1.00429 0.95897 1.21237 0.99451 0.97181 0.97051 0.93365 0.93070 0.90564 0.77653 0.91822 0.86105 0.83527 0.83056 0.83718 0.86424 0.88381 0.85129 0.83592 0.83551 0.85489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.95 7.48 71.98 0.54 -5.41 16 2 C 0.26 10.29 0.74 2.11 0.00 10.29 16 3 N -0.75 -33.92 3.93 -434.01 -1.71 -35.63 16 4 C 0.55 31.31 6.83 86.36 0.59 31.90 16 5 O -0.60 -38.59 12.27 -4.32 -0.05 -38.64 16 6 C -0.58 -32.86 9.54 24.83 0.24 -32.62 16 7 H 0.08 4.09 7.85 -2.91 -0.02 4.06 16 8 C 0.04 2.03 5.49 85.30 0.47 2.50 16 9 N -0.82 -50.05 11.87 21.84 0.26 -49.79 16 10 Si 0.99 41.69 29.56 68.60 2.03 43.72 16 11 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 12 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 13 H -0.25 -9.84 7.11 99.48 0.71 -9.14 16 14 C -0.09 -2.77 4.79 -19.87 -0.10 -2.86 16 15 C -0.12 -3.33 9.15 22.27 0.20 -3.12 16 16 C -0.12 -2.60 10.05 22.27 0.22 -2.38 16 17 C -0.12 -2.42 10.05 22.27 0.22 -2.19 16 18 C -0.12 -2.68 10.05 22.27 0.22 -2.45 16 19 C -0.13 -3.82 9.00 22.27 0.20 -3.62 16 20 C -0.06 -2.47 2.73 -19.87 -0.05 -2.52 16 21 C -0.12 -4.92 9.02 22.27 0.20 -4.72 16 22 C -0.13 -4.69 10.05 22.27 0.22 -4.47 16 23 C -0.13 -4.09 10.05 22.27 0.22 -3.86 16 24 C -0.12 -3.87 10.05 22.27 0.22 -3.65 16 25 C -0.13 -4.68 7.89 22.27 0.18 -4.50 16 26 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.05 2.57 6.04 -2.39 -0.01 2.55 16 28 H 0.08 2.61 6.56 -2.39 -0.02 2.59 16 29 H 0.39 15.93 6.50 -92.71 -0.60 15.32 16 30 H 0.27 15.19 8.29 -92.71 -0.77 14.42 16 31 H 0.12 3.37 6.24 -2.91 -0.02 3.35 16 32 H 0.15 2.33 8.06 -2.91 -0.02 2.30 16 33 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 34 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 35 H 0.12 3.57 6.48 -2.91 -0.02 3.55 16 36 H 0.10 4.23 7.53 -2.91 -0.02 4.21 16 37 H 0.13 3.95 8.06 -2.91 -0.02 3.92 16 38 H 0.15 3.42 8.06 -2.91 -0.02 3.39 16 39 H 0.15 3.49 8.06 -2.91 -0.02 3.46 16 40 H 0.13 4.15 6.06 -2.91 -0.02 4.14 16 Total: -1.00 -74.97 329.96 4.80 -70.17 By element: Atomic # 1 Polarization: 43.39 SS G_CDS: 0.46 Total: 43.85 kcal Atomic # 6 Polarization: -37.50 SS G_CDS: 3.81 Total: -33.69 kcal Atomic # 7 Polarization: -83.97 SS G_CDS: -1.45 Total: -85.42 kcal Atomic # 8 Polarization: -38.59 SS G_CDS: -0.05 Total: -38.64 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -74.97 4.80 -70.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153761314.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.204 kcal (2) G-P(sol) polarization free energy of solvation -74.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds